Cow genome map
| Conread name: | rplac_12375.y1 |
| Conread position: | 46-338 |
| Cow position: | chr4:65146807-65147093 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 72-446 |
| Cow position: | chr4:65703597-65703225 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 84-342 |
| Cow position: | chr4:65494684-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 13 |
| Conread position: | 101-406 |
| Cow position: | chr4:65121714-65122019 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-448 |
| Cow position: | chr4:65121630-65121977 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 101-448 |
| Cow position: | chr4:65350058-65350405 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 125, 112 |
| Conread position: | 101-448 |
| Cow position: | chr4:65703402-65703058 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 110, 121 |
| Conread position: | 102-344 |
| Cow position: | chr4:65546422-65546181 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 102-446 |
| Cow position: | chr4:65350227-65350568 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 110-448 |
| Cow position: | chr4:65494829-65494491 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 283 |
| Conread position: | 112-377 |
| Cow position: | chr4:65350486-65350751 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 112-379 |
| Cow position: | chr4:65121809-65122076 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 236, 231 |
| Conread position: | 124-446 |
| Cow position: | chr4:65702842-65702520 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 189, 196 |
| Conread position: | 124-448 |
| Cow position: | chr4:65261600-65261276 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 88, 102 |
| Conread position: | 124-448 |
| Cow position: | chr4:65261687-65261360 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 130-443 |
| Cow position: | chr4:65494983-65494664 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 96 |
| Conread position: | 134-425 |
| Cow position: | chr4:65146466-65146757 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 135-426 |
| Cow position: | chr4:65494720-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 84, 89 |
| Conread position: | 138-437 |
| Cow position: | chr4:65702741-65702448 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 186, 13 |
| Conread position: | 138-443 |
| Cow position: | chr4:65146388-65146691 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 182, 15 |
| Conread position: | 142-437 |
| Cow position: | chr4:65703445-65703151 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 142-441 |
| Cow position: | chr4:65494887-65494582 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 33, 257 |
| Conread position: | 150-443 |
| Cow position: | chr4:65121595-65121888 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-446 |
| Cow position: | chr4:65261490-65261194 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 237, 243 |
| Conread position: | 150-448 |
| Cow position: | chr4:65350443-65350738 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 151-369 |
| Cow position: | chr4:65261405-65261187 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-440 |
| Cow position: | chr4:65350192-65350481 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 151-443 |
| Cow position: | chr4:65703604-65703312 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 163-433 |
| Cow position: | chr4:65350036-65350306 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 147, 142 |
| Conread position: | 164-405 |
| Cow position: | chr4:65121132-65121373 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-443 |
| Cow position: | chr4:65495023-65494748 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 121, 134 |
| Conread position: | 175-441 |
| Cow position: | chr4:65703664-65703398 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 179-421 |
| Cow position: | chr4:65546428-65546187 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 179-423 |
| Cow position: | chr4:65157938-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 179-441 |
| Cow position: | chr4:65702871-65702609 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 220, 225 |
| Conread position: | 186-448 |
| Cow position: | chr4:65121547-65121809 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 262-441 |
| Cow position: | chr4:65121146-65121325 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-446 |
| Cow position: | chr4:65157938-65158121 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 111 |
Show alignments to all cow chromosomes.