Non-Coding RNA Search

Cow genome map


           Conread name:
           rplac_3633.y1
        

               Conread position:
               111-292
               

               Cow position:
               chr3:32610168-32610349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               134-404
               

               Cow position:
               chr3:21641911-21642185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               18, 166
               

               Conread position:
               137-399
               

               Cow position:
               chr3:72027565-72027823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               48, 27
               

               Conread position:
               139-391
               

               Cow position:
               chr3:2637858-2638109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               74, 186
               

               Conread position:
               140-390
               

               Cow position:
               chr3:75570518-75570271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               66, 20
               

               Conread position:
               142-393
               

               Cow position:
               chr3:2648575-2648330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               72, 150
               

               Conread position:
               142-399
               

               Cow position:
               chr3:51609249-51608999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               67, 148
               

               Conread position:
               143-389
               

               Cow position:
               chr3:46305402-46305636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               66, 46
               

               Conread position:
               144-292
               

               Cow position:
               chr3:35153555-35153706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               69, 14
               

               Conread position:
               144-308
               

               Cow position:
               chr3:67704483-67704651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               144-309
               

               Cow position:
               chr3:48241557-48241719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               144-313
               

               Cow position:
               chr3:16254896-16254729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               146, 19
               

               Conread position:
               144-391
               

               Cow position:
               chr3:79196696-79196939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               64, 162
               

               Conread position:
               144-393
               

               Cow position:
               chr3:15752694-15752444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               97, 54
               

               Conread position:
               144-397
               

               Cow position:
               chr3:15153627-15153870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               12, 157
               

               Conread position:
               144-398
               

               Cow position:
               chr3:30180022-30180266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               43, 157
               

               Conread position:
               144-398
               

               Cow position:
               chr3:39969926-39969680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               69, 161
               

               Conread position:
               144-399
               

               Cow position:
               chr3:48459392-48459145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               69, 131
               

               Conread position:
               144-404
               

               Cow position:
               chr3:48810707-48810449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 8
               

               Conread position:
               146-316
               

               Cow position:
               chr3:73467569-73467748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               149-307
               

               Cow position:
               chr3:55712382-55712544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               149-307
               

               Cow position:
               chr3:84250601-84250440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               149-392
               

               Cow position:
               chr3:15443786-15443549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 171
               

               Conread position:
               149-392
               

               Cow position:
               chr3:45183887-45183644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               149-403
               

               Cow position:
               chr3:61169746-61169998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               64, 78
               

               Conread position:
               150-378
               

               Cow position:
               chr3:75238400-75238623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               59, 171
               

               Conread position:
               150-391
               

               Cow position:
               chr3:55970450-55970691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               63, 125
               

               Conread position:
               150-392
               

               Cow position:
               chr3:45667401-45667166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               63, 16
               

               Conread position:
               150-396
               

               Cow position:
               chr3:23804459-23804684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               231, 61
               

               Conread position:
               150-398
               

               Cow position:
               chr3:210262-210505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               57, 171
               

               Conread position:
               150-398
               

               Cow position:
               chr3:45881841-45882082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               59, 169
               

               Conread position:
               150-398
               

               Cow position:
               chr3:55318958-55318715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               9, 129
               

               Conread position:
               150-398
               

               Cow position:
               chr3:79813551-79813801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 157
               

               Conread position:
               150-399
               

               Cow position:
               chr3:18067084-18067314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               150-403
               

               Cow position:
               chr3:83889190-83889436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               61, 170
               

               Conread position:
               151-315
               

               Cow position:
               chr3:81471152-81470984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               151-382
               

               Cow position:
               chr3:12978673-12978448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               47, 147
               

               Conread position:
               151-390
               

               Cow position:
               chr3:8182007-8181774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               69, 76
               

               Conread position:
               151-391
               

               Cow position:
               chr3:55189810-55189574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               57, 141
               

               Conread position:
               151-395
               

               Cow position:
               chr3:58318002-58317763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               62, 9
               

               Conread position:
               152-284
               

               Cow position:
               chr3:5374277-5374409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               152-289
               

               Cow position:
               chr3:34669782-34669647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               152-306
               

               Cow position:
               chr3:5097152-5097307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               61, 138
               

               Conread position:
               152-313
               

               Cow position:
               chr3:12711970-12711805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               152-379
               

               Cow position:
               chr3:66014264-66014482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               217, 33
               

               Conread position:
               152-381
               

               Cow position:
               chr3:30463226-30463010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               43, 110
               

               Conread position:
               152-382
               

               Cow position:
               chr3:65019920-65019686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               60, 139
               

               Conread position:
               152-385
               

               Cow position:
               chr3:12090618-12090847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               44, 96
               

               Conread position:
               152-385
               

               Cow position:
               chr3:36913995-36914240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               152-389
               

               Cow position:
               chr3:4319656-4319893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               61, 149
               

               Conread position:
               152-391
               

               Cow position:
               chr3:77582054-77582282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               133, 143
               

               Conread position:
               152-392
               

               Cow position:
               chr3:5696786-5696552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               9, 64
               

               Conread position:
               152-393
               

               Cow position:
               chr3:29334472-29334232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               12, 156
               

               Conread position:
               152-395
               

               Cow position:
               chr3:65058645-65058879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               44, 151
               

               Conread position:
               152-397
               

               Cow position:
               chr3:2025141-2025385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               51, 140
               

               Conread position:
               152-397
               

               Cow position:
               chr3:38691463-38691210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               33, 150
               

               Conread position:
               152-397
               

               Cow position:
               chr3:70334019-70333787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               61, 12
               

               Conread position:
               152-399
               

               Cow position:
               chr3:72342190-72342432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               61, 152
               

               Conread position:
               152-403
               

               Cow position:
               chr3:35056033-35055788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               32, 128
               

               Conread position:
               152-403
               

               Cow position:
               chr3:81234334-81234576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               61, 148
               

               Conread position:
               153-291
               

               Cow position:
               chr3:5365623-5365765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               153-291
               

               Cow position:
               chr3:57877513-57877654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               60, 7
               

               Conread position:
               153-294
               

               Cow position:
               chr3:17895791-17895939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               64, 7
               

               Conread position:
               153-295
               

               Cow position:
               chr3:27727884-27727739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               153-307
               

               Cow position:
               chr3:23753447-23753593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               153-307
               

               Cow position:
               chr3:56949142-56948984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               153-313
               

               Cow position:
               chr3:74134647-74134814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               153-376
               

               Cow position:
               chr3:72745617-72745394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               56, 152
               

               Conread position:
               153-378
               

               Cow position:
               chr3:19793645-19793427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               9, 96
               

               Conread position:
               153-378
               

               Cow position:
               chr3:74787378-74787588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               153-381
               

               Cow position:
               chr3:59034985-59035209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               19, 170
               

               Conread position:
               153-381
               

               Cow position:
               chr3:84174247-84174470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               20, 14
               

               Conread position:
               153-388
               

               Cow position:
               chr3:59040516-59040743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               55, 7
               

               Conread position:
               153-389
               

               Cow position:
               chr3:69650943-69650708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               60, 162
               

               Conread position:
               153-390
               

               Cow position:
               chr3:47753172-47753412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               41, 144
               

               Conread position:
               153-390
               

               Cow position:
               chr3:81087689-81087461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 9
               

               Conread position:
               153-391
               

               Cow position:
               chr3:23920483-23920250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               66, 164
               

               Conread position:
               153-392
               

               Cow position:
               chr3:8393296-8393516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               66, 101
               

               Conread position:
               153-393
               

               Cow position:
               chr3:7661802-7662035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               166, 0
               

               Conread position:
               153-393
               

               Cow position:
               chr3:54782062-54781815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               44, 14
               

               Conread position:
               153-393
               

               Cow position:
               chr3:78945885-78945644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               96, 37
               

               Conread position:
               153-394
               

               Cow position:
               chr3:65413332-65413087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               56, 137
               

               Conread position:
               153-395
               

               Cow position:
               chr3:63657917-63657669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 125
               

               Conread position:
               153-396
               

               Cow position:
               chr3:3316869-3316627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               55, 79
               

               Conread position:
               153-397
               

               Cow position:
               chr3:71231342-71231580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               56, 74
               

               Conread position:
               153-398
               

               Cow position:
               chr3:18059648-18059887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               59, 150
               

               Conread position:
               153-398
               

               Cow position:
               chr3:48468119-48468359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               19, 14
               

               Conread position:
               153-398
               

               Cow position:
               chr3:68156670-68156910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               60, 7
               

               Conread position:
               153-398
               

               Cow position:
               chr3:69144640-69144879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               58, 14
               

               Conread position:
               153-398
               

               Cow position:
               chr3:76713377-76713129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 60
               

               Conread position:
               153-399
               

               Cow position:
               chr3:15052002-15051768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               60, 129
               

               Conread position:
               153-399
               

               Cow position:
               chr3:47316432-47316193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               19, 14
               

               Conread position:
               153-399
               

               Cow position:
               chr3:74802120-74801860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               153-400
               

               Cow position:
               chr3:3985273-3985501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               153-400
               

               Cow position:
               chr3:57274007-57274243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               67, 17
               

               Conread position:
               153-403
               

               Cow position:
               chr3:56678405-56678155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               51, 123
               

               Conread position:
               153-403
               

               Cow position:
               chr3:69785679-69785430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               51, 177
               

               Conread position:
               153-404
               

               Cow position:
               chr3:71497192-71496940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               55, 168
               

               Conread position:
               154-283
               

               Cow position:
               chr3:72676038-72676171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               154-289
               

               Cow position:
               chr3:59101778-59101913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               154-292
               

               Cow position:
               chr3:4050143-4050282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               154-295
               

               Cow position:
               chr3:74846761-74846617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               61, 18
               

               Conread position:
               154-302
               

               Cow position:
               chr3:26904057-26904209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               154-304
               

               Cow position:
               chr3:75778116-75777959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               154-307
               

               Cow position:
               chr3:20841926-20841767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               154-308
               

               Cow position:
               chr3:83491033-83491190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               59, 94
               

               Conread position:
               154-310
               

               Cow position:
               chr3:19792852-19793012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               59, 100
               

               Conread position:
               154-312
               

               Cow position:
               chr3:59621701-59621539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               154-313
               

               Cow position:
               chr3:80581609-80581765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               154-345
               

               Cow position:
               chr3:21997841-21997648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               59, 175
               

               Conread position:
               154-376
               

               Cow position:
               chr3:70334748-70334531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               57, 146
               

               Conread position:
               154-378
               

               Cow position:
               chr3:53046712-53046495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               154-378
               

               Cow position:
               chr3:66900786-66900564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               59, 171
               

               Conread position:
               154-381
               

               Cow position:
               chr3:53210074-53209842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 228
               

               Conread position:
               154-381
               

               Cow position:
               chr3:53270777-53270999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               58, 167
               

               Conread position:
               154-385
               

               Cow position:
               chr3:10668932-10668709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               59, 156
               

               Conread position:
               154-388
               

               Cow position:
               chr3:65236971-65237196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               57, 146
               

               Conread position:
               154-390
               

               Cow position:
               chr3:11281713-11281944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               44, 167
               

               Conread position:
               154-391
               

               Cow position:
               chr3:53318349-53318586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               55, 6
               

               Conread position:
               154-393
               

               Cow position:
               chr3:16333743-16333983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 147
               

               Conread position:
               154-393
               

               Cow position:
               chr3:19682642-19682884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               54, 177
               

               Conread position:
               154-393
               

               Cow position:
               chr3:30222137-30222389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               56, 221
               

               Conread position:
               154-394
               

               Cow position:
               chr3:52487562-52487808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               18, 13
               

               Conread position:
               154-395
               

               Cow position:
               chr3:62046611-62046851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               154-396
               

               Cow position:
               chr3:2393015-2392788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               87, 54
               

               Conread position:
               154-397
               

               Cow position:
               chr3:13301903-13301667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               50, 121
               

               Conread position:
               154-397
               

               Cow position:
               chr3:46792331-46792566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               8, 144
               

               Conread position:
               154-399
               

               Cow position:
               chr3:59604793-59605026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               58, 141
               

               Conread position:
               154-401
               

               Cow position:
               chr3:33329764-33330021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               154-403
               

               Cow position:
               chr3:77365342-77365105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               59, 6
               

               Conread position:
               155-303
               

               Cow position:
               chr3:51234146-51233995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               155-307
               

               Cow position:
               chr3:48478081-48477932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               54, 92
               

               Conread position:
               155-309
               

               Cow position:
               chr3:2483952-2484110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               155-312
               

               Cow position:
               chr3:8733405-8733250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               136, 5
               

               Conread position:
               155-318
               

               Cow position:
               chr3:64373209-64373041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               155-378
               

               Cow position:
               chr3:5100824-5100586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               155-392
               

               Cow position:
               chr3:59702120-59702351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               61, 30
               

               Conread position:
               155-393
               

               Cow position:
               chr3:10591567-10591335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               35, 113
               

               Conread position:
               155-396
               

               Cow position:
               chr3:3556492-3556729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               18, 167
               

               Conread position:
               155-398
               

               Cow position:
               chr3:79884534-79884297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               155-399
               

               Cow position:
               chr3:82360230-82360475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               14, 57
               

               Conread position:
               155-402
               

               Cow position:
               chr3:65969115-65969361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               54, 171
               

               Conread position:
               155-404
               

               Cow position:
               chr3:78443619-78443378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               43, 146
               

               Conread position:
               156-291
               

               Cow position:
               chr3:11292299-11292160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               156-313
               

               Cow position:
               chr3:20515869-20515708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               156-320
               

               Cow position:
               chr3:10103990-10104157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               156-391
               

               Cow position:
               chr3:23132220-23131992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               52, 143
               

               Conread position:
               156-391
               

               Cow position:
               chr3:49382899-49383147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               57, 14
               

               Conread position:
               156-394
               

               Cow position:
               chr3:19711386-19711158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               57, 13
               

               Conread position:
               156-395
               

               Cow position:
               chr3:27976575-27976342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               53, 131
               

               Conread position:
               156-397
               

               Cow position:
               chr3:79271763-79271527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               32, 120
               

               Conread position:
               156-398
               

               Cow position:
               chr3:17235264-17235021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               50, 98
               

               Conread position:
               156-398
               

               Cow position:
               chr3:36375587-36375355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               157-311
               

               Cow position:
               chr3:27940188-27940035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               157-313
               

               Cow position:
               chr3:17934988-17934827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               157-313
               

               Cow position:
               chr3:73708997-73709156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               56, 127
               

               Conread position:
               157-391
               

               Cow position:
               chr3:22165465-22165239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               55, 161
               

               Conread position:
               157-391
               

               Cow position:
               chr3:52652131-52651903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               185
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               73, 142
               

               Conread position:
               157-392
               

               Cow position:
               chr3:80072079-80072320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               52, 197
               

               Conread position:
               157-398
               

               Cow position:
               chr3:83215212-83215452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               54, 168
               

               Conread position:
               158-391
               

               Cow position:
               chr3:54350488-54350258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 166
               

               Conread position:
               160-292
               

               Cow position:
               chr3:54739931-54739798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               102
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               160-301
               

               Cow position:
               chr3:39248071-39247924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               160-385
               

               Cow position:
               chr3:7678612-7678835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               160-390
               

               Cow position:
               chr3:49996770-49996542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               48, 164
               

               Conread position:
               160-390
               

               Cow position:
               chr3:54373907-54373682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               53, 142
               

               Conread position:
               160-391
               

               Cow position:
               chr3:17456315-17456091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               53, 115
               

               Conread position:
               160-391
               

               Cow position:
               chr3:67930230-67929994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               53, 85
               

               Conread position:
               160-394
               

               Cow position:
               chr3:18686859-18687080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               47, 138
               

               Conread position:
               160-397
               

               Cow position:
               chr3:23203278-23203047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               49, 95
               

               Conread position:
               160-398
               

               Cow position:
               chr3:54100773-54100530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 171
               

               Conread position:
               160-399
               

               Cow position:
               chr3:1011439-1011676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               53, 114
               

               Conread position:
               160-399
               

               Cow position:
               chr3:2674982-2675216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               50, 161
               

               Conread position:
               160-399
               

               Cow position:
               chr3:5040354-5040119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               53, 114
               

               Conread position:
               160-399
               

               Cow position:
               chr3:5703131-5703360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               53, 91
               

               Conread position:
               160-399
               

               Cow position:
               chr3:46006065-46005831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               53, 71
               

               Conread position:
               160-399
               

               Cow position:
               chr3:61467237-61466986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               160-400
               

               Cow position:
               chr3:59474075-59474305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               53, 145
               

               Conread position:
               161-304
               

               Cow position:
               chr3:3649268-3649123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               161-313
               

               Cow position:
               chr3:70401851-70402006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               161-390
               

               Cow position:
               chr3:9663218-9662994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               50, 160
               

               Conread position:
               161-390
               

               Cow position:
               chr3:73395071-73395290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               52, 33
               

               Conread position:
               161-393
               

               Cow position:
               chr3:2506526-2506297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               33, 90
               

               Conread position:
               161-397
               

               Cow position:
               chr3:52418892-52419129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               46, 31
               

               Conread position:
               161-399
               

               Cow position:
               chr3:11229411-11229187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               50, 137
               

               Conread position:
               161-399
               

               Cow position:
               chr3:48900378-48900146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 159
               

               Conread position:
               162-291
               

               Cow position:
               chr3:48252840-48252973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               162-298
               

               Cow position:
               chr3:82386774-82386641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               51, 33
               

               Conread position:
               162-385
               

               Cow position:
               chr3:59828438-59828218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               47, 135
               

               Conread position:
               162-389
               

               Cow position:
               chr3:68303271-68303493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               49, 134
               

               Conread position:
               162-392
               

               Cow position:
               chr3:51578368-51578147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               28, 91
               

               Conread position:
               162-393
               

               Cow position:
               chr3:82366084-82366307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               51, 33
               

               Conread position:
               162-394
               

               Cow position:
               chr3:52456873-52457088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               49, 62
               

               Conread position:
               162-395
               

               Cow position:
               chr3:76268020-76267794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 138
               

               Conread position:
               162-397
               

               Cow position:
               chr3:53704008-53703765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               51, 113
               

               Conread position:
               162-399
               

               Cow position:
               chr3:21081420-21081196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               51, 7
               

               Conread position:
               163-403
               

               Cow position:
               chr3:15973522-15973758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               51, 135
               

               Conread position:
               164-324
               

               Cow position:
               chr3:32457151-32457314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               49, 105
               

               Conread position:
               164-395
               

               Cow position:
               chr3:28897063-28896841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               13, 99
               

               Conread position:
               165-398
               

               Cow position:
               chr3:35624586-35624360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               48, 7
               

               Conread position:
               166-382
               

               Cow position:
               chr3:17222183-17221966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               42, 134
               

               Conread position:
               167-398
               

               Cow position:
               chr3:6728370-6728138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               44, 154
               

               Conread position:
               169-379
               

               Cow position:
               chr3:72255457-72255254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 96
               

               Conread position:
               169-399
               

               Cow position:
               chr3:8814150-8813920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 8
               

               Conread position:
               169-403
               

               Cow position:
               chr3:59933333-59933568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               39, 105
               

               Conread position:
               170-389
               

               Cow position:
               chr3:61024060-61023846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               43, 151
               

               Conread position:
               170-392
               

               Cow position:
               chr3:64648455-64648688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               170-397
               

               Cow position:
               chr3:41366743-41366517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               10, 17
               

               Conread position:
               170-398
               

               Cow position:
               chr3:83770694-83770917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               39, 132
               

               Conread position:
               173-393
               

               Cow position:
               chr3:46559749-46559538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               40, 111
               

               Conread position:
               174-291
               

               Cow position:
               chr3:20038060-20038175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               174-398
               

               Cow position:
               chr3:59630542-59630322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               117, 156
               

               Conread position:
               175-404
               

               Cow position:
               chr3:35299636-35299877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 76
               

               Conread position:
               177-394
               

               Cow position:
               chr3:8523180-8522975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               33, 42
               

               Conread position:
               177-398
               

               Cow position:
               chr3:74127533-74127317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               177-398
               

               Cow position:
               chr3:77006443-77006678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               178-397
               

               Cow position:
               chr3:18700136-18699926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               16, 24
               

               Conread position:
               179-307
               

               Cow position:
               chr3:81065258-81065385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               30, 49
               

               Conread position:
               179-396
               

               Cow position:
               chr3:18479326-18479114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               179-400
               

               Cow position:
               chr3:39812023-39812244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               85, 150
               

               Conread position:
               179-403
               

               Cow position:
               chr3:7381857-7381644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               96, 102
               

               Conread position:
               180-312
               

               Cow position:
               chr3:48296674-48296807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 92
               

               Conread position:
               181-385
               

               Cow position:
               chr3:80023335-80023145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               40, 117
               

               Conread position:
               181-390
               

               Cow position:
               chr3:621418-621616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               181-397
               

               Cow position:
               chr3:76056311-76056106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               32, 119
               

               Conread position:
               182-374
               

               Cow position:
               chr3:23265360-23265162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               16, 164
               

               Conread position:
               183-391
               

               Cow position:
               chr3:16867806-16867999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               184-403
               

               Cow position:
               chr3:79339602-79339388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               35, 45
               

               Conread position:
               185-378
               

               Cow position:
               chr3:40145442-40145630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               24, 136
               

               Conread position:
               185-390
               

               Cow position:
               chr3:28937627-28937408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               185-390
               

               Cow position:
               chr3:44534553-44534358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               86, 37
               

               Conread position:
               185-391
               

               Cow position:
               chr3:53604766-53604568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               26, 118
               

               Conread position:
               185-396
               

               Cow position:
               chr3:75966803-75966601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               28, 119
               

               Conread position:
               185-397
               

               Cow position:
               chr3:47199149-47198944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               27, 136
               

               Conread position:
               185-398
               

               Cow position:
               chr3:45314322-45314535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               23, 129
               

               Conread position:
               185-398
               

               Cow position:
               chr3:65308476-65308270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               22, 66
               

               Conread position:
               185-398
               

               Cow position:
               chr3:73589793-73589583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               26, 142
               

               Conread position:
               185-402
               

               Cow position:
               chr3:56932435-56932641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               186-388
               

               Cow position:
               chr3:59271812-59272004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               30, 52
               

               Conread position:
               186-391
               

               Cow position:
               chr3:985993-986191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               27, 89
               

               Conread position:
               186-392
               

               Cow position:
               chr3:62789971-62789773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               186-399
               

               Cow position:
               chr3:13882542-13882334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               186-399
               

               Cow position:
               chr3:43389149-43388940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               27, 135
               

               Conread position:
               186-403
               

               Cow position:
               chr3:59947644-59947856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               27, 114
               

               Conread position:
               186-403
               

               Cow position:
               chr3:70402623-70402826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               21, 55
               

               Conread position:
               187-305
               

               Cow position:
               chr3:75772781-75772898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               66, 17
               

               Conread position:
               187-381
               

               Cow position:
               chr3:62312778-62312964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               8, 44
               

               Conread position:
               187-381
               

               Cow position:
               chr3:62370037-62370223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               8, 44
               

               Conread position:
               187-390
               

               Cow position:
               chr3:68648159-68648352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               188-398
               

               Cow position:
               chr3:53192309-53192092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               189-390
               

               Cow position:
               chr3:25702360-25702156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               159
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               22, 140
               

               Conread position:
               190-389
               

               Cow position:
               chr3:6886204-6886400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               190-403
               

               Cow position:
               chr3:20158051-20158262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               28, 85
               

               Conread position:
               191-399
               

               Cow position:
               chr3:12669120-12669323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 56
               

               Conread position:
               192-385
               

               Cow position:
               chr3:15660305-15660109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               131, 109
               

               Conread position:
               192-399
               

               Cow position:
               chr3:3262842-3262639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               192-399
               

               Cow position:
               chr3:80958522-80958325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               194-307
               

               Cow position:
               chr3:2179106-2179222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               19, 35
               

               Conread position:
               194-390
               

               Cow position:
               chr3:6853547-6853339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               194-390
               

               Cow position:
               chr3:51153037-51153219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               194-397
               

               Cow position:
               chr3:55730480-55730284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               15, 125
               

               Conread position:
               194-398
               

               Cow position:
               chr3:37851487-37851679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 124
               

               Conread position:
               194-403
               

               Cow position:
               chr3:26783520-26783318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 51
               

               Conread position:
               197-382
               

               Cow position:
               chr3:43428767-43428963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               96, 42
               

               Conread position:
               197-397
               

               Cow position:
               chr3:81616461-81616268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               12, 99
               

               Conread position:
               198-381
               

               Cow position:
               chr3:65022289-65022469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               198-397
               

               Cow position:
               chr3:60186141-60186335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               66, 12
               

               Conread position:
               199-295
               

               Cow position:
               chr3:4167279-4167183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               80
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               199-313
               

               Cow position:
               chr3:35582836-35582950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               89
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               199-390
               

               Cow position:
               chr3:76168636-76168454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               199-391
               

               Cow position:
               chr3:78258759-78258574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               199-395
               

               Cow position:
               chr3:4086868-4086668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               199-397
               

               Cow position:
               chr3:62186147-62186340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               199-398
               

               Cow position:
               chr3:35802945-35802753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               199-403
               

               Cow position:
               chr3:84807332-84807138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               200-382
               

               Cow position:
               chr3:82656958-82656768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               92, 71
               

               Conread position:
               200-390
               

               Cow position:
               chr3:58614453-58614639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               200-399
               

               Cow position:
               chr3:59617068-59616869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               94, 141
               

               Conread position:
               200-399
               

               Cow position:
               chr3:76300767-76300958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               19, 118
               

               Conread position:
               201-396
               

               Cow position:
               chr3:49741307-49741114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               206-399
               

               Cow position:
               chr3:64910093-64909911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               209-381
               

               Cow position:
               chr3:4931835-4931664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               62, 118
               

               Conread position:
               209-381
               

               Cow position:
               chr3:67942530-67942367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               209-381
               

               Cow position:
               chr3:83199517-83199679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               209-390
               

               Cow position:
               chr3:19044760-19044593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               209-394
               

               Cow position:
               chr3:22716292-22716098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               209-396
               

               Cow position:
               chr3:63069360-63069180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               209-398
               

               Cow position:
               chr3:13949553-13949356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               209-398
               

               Cow position:
               chr3:79398148-79398328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               209-399
               

               Cow position:
               chr3:21959665-21959849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               209-399
               

               Cow position:
               chr3:76415897-76415699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               209-403
               

               Cow position:
               chr3:21694230-21694416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               174, 85
               

               Conread position:
               209-403
               

               Cow position:
               chr3:29413066-29413268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               210-392
               

               Cow position:
               chr3:45307914-45308103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               210-394
               

               Cow position:
               chr3:19641066-19641244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               210-398
               

               Cow position:
               chr3:2016442-2016615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               211-391
               

               Cow position:
               chr3:37641334-37641502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               212-389
               

               Cow position:
               chr3:26565716-26565533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               212-390
               

               Cow position:
               chr3:56754524-56754359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               171, 30
               

               Conread position:
               214-395
               

               Cow position:
               chr3:68624228-68624399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               215-399
               

               Cow position:
               chr3:57641812-57641987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               217-399
               

               Cow position:
               chr3:44594635-44594808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               218-313
               

               Cow position:
               chr3:44243535-44243630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               96
               

               Alignm identity:
               80
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               219-391
               

               Cow position:
               chr3:33460593-33460423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               222-378
               

               Cow position:
               chr3:83482332-83482486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               53, 28
               

               Conread position:
               224-391
               

               Cow position:
               chr3:22078096-22078254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               250-394
               

               Cow position:
               chr3:623776-623929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               251-385
               

               Cow position:
               chr3:44775452-44775585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               76, 0
               
Show alignments to all cow chromosomes.
Conread position:	111-292
Cow position:	chr3:32610168-32610349 (view UCSC Genome Browser custom track)
Alignm length:	182
Alignm identity:	99
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	0, 0
Conread position:	134-404
Cow position:	chr3:21641911-21642185 (view UCSC Genome Browser custom track)
Alignm length:	279
Alignm identity:	192
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	18, 166
Conread position:	137-399
Cow position:	chr3:72027565-72027823 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	187
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	48, 27
Conread position:	139-391
Cow position:	chr3:2637858-2638109 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	190
Alignm E-value:	9.94922e-44
Alignm gaps (pig, cow):	74, 186
Conread position:	140-390
Cow position:	chr3:75570518-75570271 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	190
Alignm E-value:	7e-39
Alignm gaps (pig, cow):	66, 20
Conread position:	142-393
Cow position:	chr3:2648575-2648330 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	184
Alignm E-value:	1e-35
Alignm gaps (pig, cow):	72, 150
Conread position:	142-399
Cow position:	chr3:51609249-51608999 (view UCSC Genome Browser custom track)
Alignm length:	261
Alignm identity:	182
Alignm E-value:	9e-31
Alignm gaps (pig, cow):	67, 148
Conread position:	143-389
Cow position:	chr3:46305402-46305636 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	190
Alignm E-value:	1.00053e-42
Alignm gaps (pig, cow):	66, 46
Conread position:	144-292
Cow position:	chr3:35153555-35153706 (view UCSC Genome Browser custom track)
Alignm length:	153
Alignm identity:	117
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	69, 14
Conread position:	144-308
Cow position:	chr3:67704483-67704651 (view UCSC Genome Browser custom track)
Alignm length:	169
Alignm identity:	123
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	41, 0
Conread position:	144-309
Cow position:	chr3:48241557-48241719 (view UCSC Genome Browser custom track)
Alignm length:	166
Alignm identity:	133
Alignm E-value:	1e-35
Alignm gaps (pig, cow):	8, 0
Conread position:	144-313
Cow position:	chr3:16254896-16254729 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	130
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	146, 19
Conread position:	144-391
Cow position:	chr3:79196696-79196939 (view UCSC Genome Browser custom track)
Alignm length:	252
Alignm identity:	170
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	64, 162
Conread position:	144-393
Cow position:	chr3:15752694-15752444 (view UCSC Genome Browser custom track)
Alignm length:	258
Alignm identity:	174
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	97, 54
Conread position:	144-397
Cow position:	chr3:15153627-15153870 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	190
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	12, 157
Conread position:	144-398
Cow position:	chr3:30180022-30180266 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	188
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	43, 157
Conread position:	144-399
Cow position:	chr3:48459392-48459145 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	191
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	69, 131
Conread position:	144-404
Cow position:	chr3:48810707-48810449 (view UCSC Genome Browser custom track)
Alignm length:	266
Alignm identity:	205
Alignm E-value:	0
Alignm gaps (pig, cow):	54, 8
Conread position:	146-316
Cow position:	chr3:73467569-73467748 (view UCSC Genome Browser custom track)
Alignm length:	180
Alignm identity:	133
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	20, 0
Conread position:	149-307
Cow position:	chr3:55712382-55712544 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	129
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	64, 0