Cow genome map
| Conread name: | rplac_8678.y1 |
| Conread position: | 77-483 |
| Cow position: | chr19:23614331-23614741 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 78-476 |
| Cow position: | chr19:23614584-23614986 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 6, 68 |
| Conread position: | 83-474 |
| Cow position: | chr19:14960325-14959934 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 118, 151 |
| Conread position: | 83-476 |
| Cow position: | chr19:14960241-14959847 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 114, 89 |
| Conread position: | 83-481 |
| Cow position: | chr19:23649788-23650190 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 83-492 |
| Cow position: | chr19:23613834-23614246 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 81, 64 |
| Conread position: | 83-493 |
| Cow position: | chr19:23614086-23614499 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 83-504 |
| Cow position: | chr19:23614674-23615099 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 96-487 |
| Cow position: | chr19:23614267-23614661 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 96-510 |
| Cow position: | chr19:14940151-14940570 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 105, 229 |
| Conread position: | 105-474 |
| Cow position: | chr19:20635545-20635173 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 93, 229 |
| Conread position: | 105-474 |
| Cow position: | chr19:20678123-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 105-474 |
| Cow position: | chr19:43570136-43569764 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 105-476 |
| Cow position: | chr19:14948379-14948005 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 105-476 |
| Cow position: | chr19:14960137-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 92, 129 |
| Conread position: | 105-476 |
| Cow position: | chr19:23650062-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 105-477 |
| Cow position: | chr19:14960387-14960014 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 129 |
| Conread position: | 105-493 |
| Cow position: | chr19:23613604-23613995 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 92, 150 |
| Conread position: | 105-494 |
| Cow position: | chr19:14940328-14940720 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 109-493 |
| Cow position: | chr19:23613440-23613827 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 88, 223 |
| Conread position: | 109-499 |
| Cow position: | chr19:23614028-23614421 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 109-510 |
| Cow position: | chr19:14940584-14940990 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 110-476 |
| Cow position: | chr19:23597206-23597575 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 122-474 |
| Cow position: | chr19:14940009-14940364 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 206 |
| Conread position: | 122-476 |
| Cow position: | chr19:23649743-23650100 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 141-487 |
| Cow position: | chr19:23649678-23650027 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 158-476 |
| Cow position: | chr19:20677839-20678161 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 246 |
| Conread position: | 159-476 |
| Cow position: | chr19:43570250-43569930 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 154 |
| Conread position: | 162-476 |
| Cow position: | chr19:23596925-23597239 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 165-510 |
| Cow position: | chr19:23597345-23597695 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 166-474 |
| Cow position: | chr19:20678352-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 171-476 |
| Cow position: | chr19:20677602-20677909 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 22, 6 |
| Conread position: | 173-510 |
| Cow position: | chr19:14948395-14948053 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 200-476 |
| Cow position: | chr19:23649572-23649848 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 200-493 |
| Cow position: | chr19:43570364-43570081 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 205-480 |
| Cow position: | chr19:20678058-20678333 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-493 |
| Cow position: | chr19:14940011-14940299 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 206-476 |
| Cow position: | chr19:20677975-20678245 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 206-482 |
| Cow position: | chr19:14960367-14960093 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 206-494 |
| Cow position: | chr19:20678311-20678599 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 206-497 |
| Cow position: | chr19:23614548-23614840 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 210-479 |
| Cow position: | chr19:20635353-20635084 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 114, 104 |
| Conread position: | 213-476 |
| Cow position: | chr19:23649501-23649764 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 215-491 |
| Cow position: | chr19:20635516-20635238 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 236-476 |
| Cow position: | chr19:14948413-14948173 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-478 |
| Cow position: | chr19:20677754-20677995 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 237-482 |
| Cow position: | chr19:23597252-23597497 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-474 |
| Cow position: | chr19:23597086-23597321 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 239-499 |
| Cow position: | chr19:20635576-20635316 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 254-474 |
| Cow position: | chr19:14940564-14940784 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-474 |
| Cow position: | chr19:23613420-23613640 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 148, 127 |
| Conread position: | 254-493 |
| Cow position: | chr19:23613924-23614163 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-499 |
| Cow position: | chr19:20635645-20635400 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 81 |
| Conread position: | 254-499 |
| Cow position: | chr19:23649458-23649702 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 256-477 |
| Cow position: | chr19:14960401-14960180 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-493 |
| Cow position: | chr19:23613342-23613575 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-476 |
| Cow position: | chr19:23597199-23597407 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-492 |
| Cow position: | chr19:14939988-14940214 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 63 |
| Conread position: | 269-475 |
| Cow position: | chr19:14959649-14959444 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 269-476 |
| Cow position: | chr19:23649389-23649596 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 269-494 |
| Cow position: | chr19:14959566-14959341 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 59 |
| Conread position: | 269-510 |
| Cow position: | chr19:20677534-20677777 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 221, 0 |
| Conread position: | 278-476 |
| Cow position: | chr19:20678215-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-493 |
| Cow position: | chr19:14960448-14960248 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.