Cow genome map
| Conread name: | rplac_8678.y1 |
| Conread position: | 2-475 |
| Cow position: | chr22:12476406-12475930 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 81-438 |
| Cow position: | chr22:12385268-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 83-474 |
| Cow position: | chr22:12431424-12431030 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 83-496 |
| Cow position: | chr22:12399192-12398774 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 114, 237 |
| Conread position: | 96-493 |
| Cow position: | chr22:12385507-12385105 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 99-474 |
| Cow position: | chr22:12431914-12431534 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 105-468 |
| Cow position: | chr22:12432158-12431792 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 105-469 |
| Cow position: | chr22:12458522-12458155 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 92, 132 |
| Conread position: | 105-474 |
| Cow position: | chr22:12431234-12430862 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 105-474 |
| Cow position: | chr22:12458354-12457982 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 92, 127 |
| Conread position: | 105-475 |
| Cow position: | chr22:12476051-12475678 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 105-475 |
| Cow position: | chr22:12498956-12499329 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 129 |
| Conread position: | 105-476 |
| Cow position: | chr22:11640860-11641234 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 138 |
| Conread position: | 105-476 |
| Cow position: | chr22:12385328-12384954 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 97, 145 |
| Conread position: | 105-476 |
| Cow position: | chr22:12431654-12431280 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 308 |
| Conread position: | 105-476 |
| Cow position: | chr22:12499208-12499582 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 105-486 |
| Cow position: | chr22:12499124-12499508 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 127 |
| Conread position: | 105-490 |
| Cow position: | chr22:12476135-12475745 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 105-493 |
| Cow position: | chr22:12458606-12458215 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 129 |
| Conread position: | 108-477 |
| Cow position: | chr22:11701274-11701646 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 109-434 |
| Cow position: | chr22:12399082-12398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 88, 222 |
| Conread position: | 109-474 |
| Cow position: | chr22:12499548-12499916 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 109-475 |
| Cow position: | chr22:12385408-12385039 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 49 |
| Conread position: | 109-476 |
| Cow position: | chr22:12431986-12431616 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 107 |
| Conread position: | 109-476 |
| Cow position: | chr22:12475711-12475341 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 109-500 |
| Cow position: | chr22:12399250-12398857 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 259 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 110-446 |
| Cow position: | chr22:12475626-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 124 |
| Conread position: | 111-495 |
| Cow position: | chr22:12430976-12430589 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 92, 195 |
| Conread position: | 117-474 |
| Cow position: | chr22:12399578-12399218 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 86, 211 |
| Conread position: | 117-491 |
| Cow position: | chr22:11666461-11666839 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 123-477 |
| Cow position: | chr22:12475949-12475592 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 109 |
| Conread position: | 154-474 |
| Cow position: | chr22:14467939-14468265 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 156-478 |
| Cow position: | chr22:12399371-12399046 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 164-476 |
| Cow position: | chr22:12399447-12399132 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 183-486 |
| Cow position: | chr22:12458609-12458306 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 193-477 |
| Cow position: | chr22:46654022-46654306 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 199-486 |
| Cow position: | chr22:12476374-12476087 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 200-476 |
| Cow position: | chr22:12399828-12399552 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 200-476 |
| Cow position: | chr22:12431724-12431448 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 200-478 |
| Cow position: | chr22:12498886-12499164 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 200-492 |
| Cow position: | chr22:12399906-12399620 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 201-475 |
| Cow position: | chr22:12418844-12418568 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 205-476 |
| Cow position: | chr22:14468080-14468351 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 206-445 |
| Cow position: | chr22:11641216-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 206-500 |
| Cow position: | chr22:12385646-12385351 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 210-476 |
| Cow position: | chr22:12419001-12418735 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 214-474 |
| Cow position: | chr22:46654127-46654387 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 214-474 |
| Cow position: | chr22:46654295-46654555 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 215-474 |
| Cow position: | chr22:46653960-46654219 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 107, 96 |
| Conread position: | 231-473 |
| Cow position: | chr22:12458057-12457815 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 231-476 |
| Cow position: | chr22:12458644-12458400 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 246-476 |
| Cow position: | chr22:12431342-12431112 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 247-475 |
| Cow position: | chr22:12399613-12399385 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 247-495 |
| Cow position: | chr22:46654412-46654660 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 247-502 |
| Cow position: | chr22:46654244-46654498 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 248-465 |
| Cow position: | chr22:12499018-12499235 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-476 |
| Cow position: | chr22:12476241-12476013 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-476 |
| Cow position: | chr22:12458287-12458064 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 165, 159 |
| Conread position: | 253-476 |
| Cow position: | chr22:14429799-14430022 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-474 |
| Cow position: | chr22:12385682-12385462 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 254-476 |
| Cow position: | chr22:12458118-12457896 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-477 |
| Cow position: | chr22:46654503-46654726 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 255-404 |
| Cow position: | chr22:12419225-12419076 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 66 |
| Conread position: | 261-476 |
| Cow position: | chr22:12431411-12431196 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-476 |
| Cow position: | chr22:11641187-11641402 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 263-481 |
| Cow position: | chr22:14430227-14430447 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 265-476 |
| Cow position: | chr22:14429725-14429938 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 268-477 |
| Cow position: | chr22:11666699-11666908 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 268-477 |
| Cow position: | chr22:12499457-12499667 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 269-470 |
| Cow position: | chr22:12432327-12432126 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 123, 132 |
| Conread position: | 270-481 |
| Cow position: | chr22:14467977-14468188 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 270-495 |
| Cow position: | chr22:12498872-12499100 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 272-487 |
| Cow position: | chr22:12419023-12418808 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 272-493 |
| Cow position: | chr22:14429650-14429871 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 292-487 |
| Cow position: | chr22:12419272-12419077 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 41 |
Show alignments to all cow chromosomes.