Cow genome map
| Conread name: | rplac_8678.y1 |
| Conread position: | 55-510 |
| Cow position: | chr23:25626235-25626691 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 145, 28 |
| Conread position: | 74-493 |
| Cow position: | chr23:24547359-24546937 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 123, 254 |
| Conread position: | 82-481 |
| Cow position: | chr23:24535814-24535410 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 152 |
| Conread position: | 83-474 |
| Cow position: | chr23:25626094-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 245 |
| Conread position: | 105-453 |
| Cow position: | chr23:24626394-24626743 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 105-475 |
| Cow position: | chr23:24535959-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 105-493 |
| Cow position: | chr23:24547160-24546769 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 92, 129 |
| Conread position: | 105-493 |
| Cow position: | chr23:24560552-24560161 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 119 |
| Conread position: | 105-493 |
| Cow position: | chr23:24560804-24560413 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 105-493 |
| Cow position: | chr23:25626617-25627008 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 92, 129 |
| Conread position: | 105-500 |
| Cow position: | chr23:24547076-24546679 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 122-476 |
| Cow position: | chr23:24535858-24535501 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 112 |
| Conread position: | 122-476 |
| Cow position: | chr23:24560703-24560346 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 121 |
| Conread position: | 123-474 |
| Cow position: | chr23:24639236-24639590 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 155-487 |
| Cow position: | chr23:24639436-24639771 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 156-476 |
| Cow position: | chr23:24626277-24626600 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 162-476 |
| Cow position: | chr23:24535986-24535669 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 164-476 |
| Cow position: | chr23:25626427-25626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 164-510 |
| Cow position: | chr23:24639697-24640047 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 179-493 |
| Cow position: | chr23:24639544-24639861 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 146 |
| Conread position: | 199-434 |
| Cow position: | chr23:25660502-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 200-447 |
| Cow position: | chr23:24654133-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 200-475 |
| Cow position: | chr23:24654049-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 200-476 |
| Cow position: | chr23:24522468-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 200-476 |
| Cow position: | chr23:24560874-24560598 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 200-500 |
| Cow position: | chr23:25626631-25626930 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 130 |
| Conread position: | 206-474 |
| Cow position: | chr23:24522546-24522278 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 206-474 |
| Cow position: | chr23:25724105-25723837 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 206-475 |
| Cow position: | chr23:25626556-25626822 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 210-474 |
| Cow position: | chr23:25660177-25660441 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 229-476 |
| Cow position: | chr23:24626436-24626684 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 247-481 |
| Cow position: | chr23:25660382-25660616 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 247-493 |
| Cow position: | chr23:24535982-24535736 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 247-493 |
| Cow position: | chr23:25626177-25626423 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-474 |
| Cow position: | chr23:24560309-24560097 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 263-494 |
| Cow position: | chr23:25723966-25723733 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 267-475 |
| Cow position: | chr23:24639465-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 269-476 |
| Cow position: | chr23:25660320-25660527 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 269-493 |
| Cow position: | chr23:24626309-24626533 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-476 |
| Cow position: | chr23:24654042-24654241 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 278-473 |
| Cow position: | chr23:24521968-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 291-476 |
| Cow position: | chr23:25660174-25660359 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 32 |
Show alignments to all cow chromosomes.