Cow genome map
| Conread name: | rplac_8678.y1 |
| Conread position: | 57-493 |
| Cow position: | chr25:34769747-34769312 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 78-492 |
| Cow position: | chr25:33298704-33299122 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 7, 162 |
| Conread position: | 83-468 |
| Cow position: | chr25:33298878-33299266 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 75, 55 |
| Conread position: | 83-468 |
| Cow position: | chr25:36800778-36801166 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 114, 156 |
| Conread position: | 83-482 |
| Cow position: | chr25:36800694-36801096 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 83-495 |
| Cow position: | chr25:36801522-36801936 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 85-487 |
| Cow position: | chr25:23420364-23420769 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 96-441 |
| Cow position: | chr25:33299479-33299827 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 57 |
| Conread position: | 96-478 |
| Cow position: | chr25:36800875-36801260 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 101, 291 |
| Conread position: | 96-492 |
| Cow position: | chr25:33299143-33299542 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 57 |
| Conread position: | 96-493 |
| Cow position: | chr25:34447098-34447497 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 100, 76 |
| Conread position: | 101-493 |
| Cow position: | chr25:36800628-36801023 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 105-476 |
| Cow position: | chr25:34433606-34433977 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 155 |
| Conread position: | 105-478 |
| Cow position: | chr25:33298816-33299192 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 105-487 |
| Cow position: | chr25:33157388-33157003 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 105-491 |
| Cow position: | chr25:34447359-34447746 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 93, 126 |
| Conread position: | 105-493 |
| Cow position: | chr25:33127803-33128194 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 90, 129 |
| Conread position: | 105-493 |
| Cow position: | chr25:34447275-34447666 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 92, 127 |
| Conread position: | 105-493 |
| Cow position: | chr25:34769955-34769564 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 105-502 |
| Cow position: | chr25:33157136-33156738 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 105-513 |
| Cow position: | chr25:33299236-33299649 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 109-493 |
| Cow position: | chr25:23420472-23420859 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 110-476 |
| Cow position: | chr25:34769866-34769497 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 111-500 |
| Cow position: | chr25:34770118-34769726 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 115-439 |
| Cow position: | chr25:33127897-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 119 |
| Conread position: | 131-493 |
| Cow position: | chr25:23420327-23420691 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 162-493 |
| Cow position: | chr25:34713924-34714258 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 165-474 |
| Cow position: | chr25:33144910-33145220 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 166-474 |
| Cow position: | chr25:34447252-34447563 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 197-474 |
| Cow position: | chr25:33157125-33156848 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 200-475 |
| Cow position: | chr25:33305387-33305113 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 206-468 |
| Cow position: | chr25:36801072-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 206-495 |
| Cow position: | chr25:33299508-33299796 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 285, 0 |
| Conread position: | 210-474 |
| Cow position: | chr25:33298588-33298852 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-487 |
| Cow position: | chr25:326948-327225 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 183, 174 |
| Conread position: | 210-492 |
| Cow position: | chr25:34446963-34447245 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 210-493 |
| Cow position: | chr25:33298672-33298955 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 213-465 |
| Cow position: | chr25:33157193-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 239-441 |
| Cow position: | chr25:36801765-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-488 |
| Cow position: | chr25:33299457-33299706 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-478 |
| Cow position: | chr25:34770069-34769831 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 242-487 |
| Cow position: | chr25:36801516-36801761 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-475 |
| Cow position: | chr25:33145161-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 253-493 |
| Cow position: | chr25:33299135-33299375 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 79, 75 |
| Conread position: | 253-497 |
| Cow position: | chr25:34762811-34763056 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 231 |
| Conread position: | 254-448 |
| Cow position: | chr25:34433005-34433199 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-477 |
| Cow position: | chr25:22235982-22236205 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-482 |
| Cow position: | chr25:33157404-33157176 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 254-492 |
| Cow position: | chr25:34447091-34447329 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 261-479 |
| Cow position: | chr25:33305970-33305756 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 263-475 |
| Cow position: | chr25:36801453-36801665 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-487 |
| Cow position: | chr25:33127794-33128020 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 263-496 |
| Cow position: | chr25:22235905-22236139 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 14, 227 |
| Conread position: | 268-480 |
| Cow position: | chr25:34763161-34763374 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 269-479 |
| Cow position: | chr25:414696-414486 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 269-493 |
| Cow position: | chr25:23420383-23420607 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-495 |
| Cow position: | chr25:33298565-33298792 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 272-476 |
| Cow position: | chr25:33127721-33127925 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-475 |
| Cow position: | chr25:34446962-34447144 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 28 |
Show alignments to all cow chromosomes.