Cow genome map
| Conread name: | rplac_8678.y1 |
| Conread position: | 6-493 |
| Cow position: | chr7:18389896-18390386 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 83-474 |
| Cow position: | chr7:1439870-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 96-492 |
| Cow position: | chr7:18390154-18390553 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 105-474 |
| Cow position: | chr7:3179782-3180154 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 105-475 |
| Cow position: | chr7:42878855-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 92, 125 |
| Conread position: | 105-475 |
| Cow position: | chr7:42878939-42878566 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 92, 132 |
| Conread position: | 105-480 |
| Cow position: | chr7:42879107-42878729 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 105-493 |
| Cow position: | chr7:1015024-1015415 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 92, 127 |
| Conread position: | 105-493 |
| Cow position: | chr7:3180286-3180677 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 105-499 |
| Cow position: | chr7:1014772-1015168 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 98, 220 |
| Conread position: | 105-510 |
| Cow position: | chr7:1014442-1014846 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 105-510 |
| Cow position: | chr7:3179950-3180360 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 105-510 |
| Cow position: | chr7:42878687-42878277 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 92, 131 |
| Conread position: | 105-513 |
| Cow position: | chr7:3180454-3180866 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 106-493 |
| Cow position: | chr7:11601185-11600795 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 107-478 |
| Cow position: | chr7:1015110-1015486 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 109-475 |
| Cow position: | chr7:42879187-42878818 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 127 |
| Conread position: | 109-492 |
| Cow position: | chr7:11601098-11600712 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 110-487 |
| Cow position: | chr7:3180039-3180419 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 110-492 |
| Cow position: | chr7:42879354-42878969 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 115-493 |
| Cow position: | chr7:1439819-1440198 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 165-475 |
| Cow position: | chr7:8243699-8244010 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 295 |
| Conread position: | 165-493 |
| Cow position: | chr7:3179758-3180089 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 166-396 |
| Cow position: | chr7:1440036-1440269 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 141 |
| Conread position: | 166-474 |
| Cow position: | chr7:1014917-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 166-476 |
| Cow position: | chr7:8277910-8278223 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 173-474 |
| Cow position: | chr7:1014672-1014976 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 173-499 |
| Cow position: | chr7:11600866-11600537 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 177-474 |
| Cow position: | chr7:1439459-1439762 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 200-493 |
| Cow position: | chr7:18390429-18390722 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 206-482 |
| Cow position: | chr7:1439575-1439853 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 206-492 |
| Cow position: | chr7:18390351-18390637 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 206-493 |
| Cow position: | chr7:3180474-3180761 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-493 |
| Cow position: | chr7:11600742-11600459 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 239-476 |
| Cow position: | chr7:3180255-3180492 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 244-476 |
| Cow position: | chr7:8278159-8278391 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 89 |
| Conread position: | 245-476 |
| Cow position: | chr7:8277908-8278139 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 88 |
| Conread position: | 245-476 |
| Cow position: | chr7:8325297-8325528 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 162, 147 |
| Conread position: | 245-476 |
| Cow position: | chr7:11434511-11434280 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 246-500 |
| Cow position: | chr7:8325886-8326139 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 247-476 |
| Cow position: | chr7:8324795-8325024 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 151, 170 |
| Conread position: | 254-477 |
| Cow position: | chr7:8325054-8325277 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 140, 159 |
| Conread position: | 254-487 |
| Cow position: | chr7:1014672-1014905 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-493 |
| Cow position: | chr7:11600866-11600627 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-492 |
| Cow position: | chr7:3179683-3179920 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 256-475 |
| Cow position: | chr7:1439457-1439674 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 256-500 |
| Cow position: | chr7:1014260-1014503 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 263-475 |
| Cow position: | chr7:8277840-8278054 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 155 |
| Conread position: | 263-510 |
| Cow position: | chr7:1015099-1015350 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 270-478 |
| Cow position: | chr7:18390583-18390791 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.