Cow genome map
| Conread name: | rplac_8938.y1 |
| Conread position: | 1-392 |
| Cow position: | chr22:12399145-12398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 236, 229 |
| Conread position: | 1-489 |
| Cow position: | chr22:14429925-14430413 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 282 |
| Conread position: | 1-493 |
| Cow position: | chr22:12476362-12475870 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 5-320 |
| Cow position: | chr22:12499657-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 175, 193 |
| Conread position: | 5-425 |
| Cow position: | chr22:12385299-12384880 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 5-432 |
| Cow position: | chr22:14468258-14468684 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 108 |
| Conread position: | 5-433 |
| Cow position: | chr22:12432381-12431953 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 5-433 |
| Cow position: | chr22:14442159-14442586 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 418, 0 |
| Conread position: | 5-434 |
| Cow position: | chr22:14430601-14431023 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 112, 98 |
| Conread position: | 5-435 |
| Cow position: | chr22:12385383-12384953 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 276 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 179, 191 |
| Conread position: | 5-473 |
| Cow position: | chr22:12399225-12398757 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 5-483 |
| Cow position: | chr22:12475770-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 5-484 |
| Cow position: | chr22:46654212-46654691 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 5-486 |
| Cow position: | chr22:11640973-11641454 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 102, 118 |
| Conread position: | 5-486 |
| Cow position: | chr22:14441991-14442472 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 5-489 |
| Cow position: | chr22:14429761-14430245 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 111 |
| Conread position: | 5-489 |
| Cow position: | chr22:14430265-14430749 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 96 |
| Conread position: | 5-489 |
| Cow position: | chr22:14430349-14430833 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 190 |
| Conread position: | 5-490 |
| Cow position: | chr22:12399561-12399076 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 178, 188 |
| Conread position: | 5-490 |
| Cow position: | chr22:12458577-12458092 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 192, 179 |
| Conread position: | 5-490 |
| Cow position: | chr22:14429845-14430330 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 5-490 |
| Cow position: | chr22:14430181-14430666 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 179 |
| Conread position: | 5-493 |
| Cow position: | chr22:12399309-12398821 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 366 |
| Conread position: | 5-493 |
| Cow position: | chr22:12431709-12431221 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 303 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 5-493 |
| Cow position: | chr22:12458325-12457837 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 108, 96 |
| Conread position: | 6-484 |
| Cow position: | chr22:14468174-14468653 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 6-486 |
| Cow position: | chr22:14430014-14430494 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-490 |
| Cow position: | chr22:11640806-11641290 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 318 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 97, 117 |
| Conread position: | 6-490 |
| Cow position: | chr22:14430098-14430582 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 109 |
| Conread position: | 25-490 |
| Cow position: | chr22:12399708-12399244 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 292 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 325, 12 |
| Conread position: | 26-485 |
| Cow position: | chr22:14430454-14430913 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 244 |
| Conread position: | 26-490 |
| Cow position: | chr22:12399795-12399328 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 160 |
| Conread position: | 30-432 |
| Cow position: | chr22:12431852-12431450 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 33-490 |
| Cow position: | chr22:12432185-12431728 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 81, 65 |
| Conread position: | 37-428 |
| Cow position: | chr22:12431005-12430614 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 226, 218 |
| Conread position: | 37-490 |
| Cow position: | chr22:12458377-12457924 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 291 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 81, 65 |
| Conread position: | 37-493 |
| Cow position: | chr22:14468038-14468494 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 74 |
| Conread position: | 38-488 |
| Cow position: | chr22:12476157-12475707 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 38-490 |
| Cow position: | chr22:14467955-14468407 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 147 |
| Conread position: | 38-493 |
| Cow position: | chr22:12418963-12418508 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 146 |
| Conread position: | 39-483 |
| Cow position: | chr22:46654076-46654522 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 40-490 |
| Cow position: | chr22:11640757-11641206 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 144, 9 |
| Conread position: | 44-484 |
| Cow position: | chr22:12431082-12430642 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 220, 212 |
| Conread position: | 44-489 |
| Cow position: | chr22:12431586-12431141 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 173, 149 |
| Conread position: | 44-490 |
| Cow position: | chr22:12431334-12430888 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 140, 174 |
| Conread position: | 44-490 |
| Cow position: | chr22:12499360-12499806 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 49-490 |
| Cow position: | chr22:12431917-12431476 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 144, 138 |
| Conread position: | 49-490 |
| Cow position: | chr22:12432421-12431980 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 141, 152 |
| Conread position: | 49-490 |
| Cow position: | chr22:12475810-12475369 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 154, 144 |
| Conread position: | 49-490 |
| Cow position: | chr22:14429721-14430162 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 50-350 |
| Cow position: | chr22:11666607-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 187, 180 |
| Conread position: | 50-399 |
| Cow position: | chr22:12499618-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 135, 144 |
| Conread position: | 50-400 |
| Cow position: | chr22:12458112-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 140, 162 |
| Conread position: | 50-483 |
| Cow position: | chr22:11701261-11701694 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 187, 180 |
| Conread position: | 50-485 |
| Cow position: | chr22:14442286-14442720 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 16, 224 |
| Conread position: | 50-490 |
| Cow position: | chr22:12475977-12475537 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 301 |
| Conread position: | 50-490 |
| Cow position: | chr22:12499282-12499722 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 324, 303 |
| Conread position: | 50-490 |
| Cow position: | chr22:14468135-14468575 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 250 |
| Conread position: | 52-493 |
| Cow position: | chr22:14429559-14429997 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 83, 48 |
| Conread position: | 54-489 |
| Cow position: | chr22:12458612-12458177 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 56-489 |
| Cow position: | chr22:12476391-12475958 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 56-489 |
| Cow position: | chr22:12498868-12499301 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 56-490 |
| Cow position: | chr22:12432498-12432064 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 317 |
| Conread position: | 56-493 |
| Cow position: | chr22:12385416-12384979 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 71-431 |
| Cow position: | chr22:14441889-14442249 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 52 |
| Conread position: | 102-493 |
| Cow position: | chr22:11666495-11666882 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 179, 11 |
| Conread position: | 110-493 |
| Cow position: | chr22:12385616-12385231 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 113-489 |
| Cow position: | chr22:11640661-11641037 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 122-492 |
| Cow position: | chr22:11701165-11701535 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 128-490 |
| Cow position: | chr22:14442030-14442392 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 172 |
| Conread position: | 134-490 |
| Cow position: | chr22:46654005-46654361 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 145-489 |
| Cow position: | chr22:12399919-12399581 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 212, 79 |
Show alignments to all cow chromosomes.