Cow genome map
| Conread name: | rplac_8938.y1 |
| Conread position: | 5-269 |
| Cow position: | chr25:34769506-34769242 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 179, 205 |
| Conread position: | 5-350 |
| Cow position: | chr25:33127832-33128177 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 98, 118 |
| Conread position: | 5-351 |
| Cow position: | chr25:23420497-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 5-413 |
| Cow position: | chr25:36801573-36801977 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 115, 87 |
| Conread position: | 5-484 |
| Cow position: | chr25:23420329-23420808 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 5-488 |
| Cow position: | chr25:33299181-33299664 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 84 |
| Conread position: | 5-490 |
| Cow position: | chr25:34769842-34769357 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 179 |
| Conread position: | 8-489 |
| Cow position: | chr25:34713983-34714464 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 114 |
| Conread position: | 19-490 |
| Cow position: | chr25:33298779-33299246 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 218, 14 |
| Conread position: | 37-486 |
| Cow position: | chr25:33305422-33304979 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 37-489 |
| Cow position: | chr25:34769978-34769526 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 173 |
| Conread position: | 37-490 |
| Cow position: | chr25:34447000-34447453 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 166, 146 |
| Conread position: | 38-441 |
| Cow position: | chr25:36800946-36801348 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 38-481 |
| Cow position: | chr25:33127781-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 40-428 |
| Cow position: | chr25:33157155-33156767 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 144, 9 |
| Conread position: | 40-490 |
| Cow position: | chr25:33157323-33156874 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 9 |
| Conread position: | 42-399 |
| Cow position: | chr25:34769553-34769196 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 44-489 |
| Cow position: | chr25:34447259-34447704 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 145, 174 |
| Conread position: | 49-435 |
| Cow position: | chr25:34447180-34447566 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 50-359 |
| Cow position: | chr25:18642180-18641868 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 50 |
| Conread position: | 50-435 |
| Cow position: | chr25:23420458-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 159, 163 |
| Conread position: | 52-490 |
| Cow position: | chr25:36801452-36801890 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 110-490 |
| Cow position: | chr25:23420350-23420730 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 252 |
| Conread position: | 112-435 |
| Cow position: | chr25:18642202-18641876 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 133, 264 |
| Conread position: | 122-401 |
| Cow position: | chr25:326986-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 122-441 |
| Cow position: | chr25:34713929-34714248 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 112 |
| Conread position: | 122-483 |
| Cow position: | chr25:33299466-33299827 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 232, 249 |
| Conread position: | 122-490 |
| Cow position: | chr25:33157410-33157042 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 62, 96 |
| Conread position: | 122-490 |
| Cow position: | chr25:34770061-34769693 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 253, 246 |
| Conread position: | 128-422 |
| Cow position: | chr25:33305731-33305438 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 142-489 |
| Cow position: | chr25:346447-346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 146-427 |
| Cow position: | chr25:366728-367009 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 146-485 |
| Cow position: | chr25:326926-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 146-489 |
| Cow position: | chr25:33298566-33298909 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 204, 226 |
| Conread position: | 158-489 |
| Cow position: | chr25:33127733-33128064 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 110, 129 |
| Conread position: | 234-456 |
| Cow position: | chr25:34433027-34433250 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 46 |
Show alignments to all cow chromosomes.