Cow genome map

Conread name: rplac_8938.y1

Conread position: 1-316
Cow position: chr7:3180563-3180877 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 122

Conread position: 1-390
Cow position: chr7:11434622-11434240 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 1-394
Cow position: chr7:8243748-8244138 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 248

Conread position: 1-473
Cow position: chr7:8325851-8326320 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 305
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 285, 280

Conread position: 1-486
Cow position: chr7:8243161-8243645 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 122

Conread position: 1-486
Cow position: chr7:8277706-8278191 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 110

Conread position: 1-488
Cow position: chr7:1014299-1014780 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 305
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 29, 49

Conread position: 1-488
Cow position: chr7:8278126-8278611 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 112

Conread position: 1-490
Cow position: chr7:8243412-8243901 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 433, 444

Conread position: 1-490
Cow position: chr7:8277874-8278363 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 51

Conread position: 1-490
Cow position: chr7:8325011-8325500 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-490
Cow position: chr7:8325347-8325836 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 379

Conread position: 1-490
Cow position: chr7:8325515-8326004 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-493
Cow position: chr7:8277624-8278114 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 3-478
Cow position: chr7:8243666-8244138 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 434, 329

Conread position: 4-490
Cow position: chr7:8242996-8243481 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 0

Conread position: 4-490
Cow position: chr7:8325098-8325584 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-493
Cow position: chr7:8243332-8243820 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 48

Conread position: 5-394
Cow position: chr7:8325771-8326163 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 0

Conread position: 5-432
Cow position: chr7:8325687-8326114 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 47

Conread position: 5-439
Cow position: chr7:8278298-8278723 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 285
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 142, 137

Conread position: 5-470
Cow position: chr7:8244002-8244451 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 299
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 79

Conread position: 5-485
Cow position: chr7:3180315-3180795 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 94

Conread position: 5-486
Cow position: chr7:8242829-8243310 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 5-489
Cow position: chr7:3179895-3180379 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 14

Conread position: 5-489
Cow position: chr7:11434786-11434309 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 104

Conread position: 5-490
Cow position: chr7:8243500-8243985 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 47

Conread position: 5-490
Cow position: chr7:8243584-8244067 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 197

Conread position: 5-490
Cow position: chr7:8277542-8278027 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 347

Conread position: 5-490
Cow position: chr7:8324763-8325248 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 189

Conread position: 5-490
Cow position: chr7:8324847-8325332 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 110

Conread position: 5-490
Cow position: chr7:8325267-8325752 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 358

Conread position: 5-490
Cow position: chr7:8325435-8325920 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 350

Conread position: 5-490
Cow position: chr7:11434940-11434476 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 95

Conread position: 5-490
Cow position: chr7:11600989-11600504 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 105

Conread position: 5-490
Cow position: chr7:42879162-42878677 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 186

Conread position: 5-492
Cow position: chr7:8324931-8325418 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 350

Conread position: 5-493
Cow position: chr7:18390108-18390596 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 190

Conread position: 9-490
Cow position: chr7:3180067-3180548 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 29

Conread position: 21-488
Cow position: chr7:3179740-3180210 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 166

Conread position: 24-350
Cow position: chr7:11600801-11600476 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 211
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 0

Conread position: 26-490
Cow position: chr7:8277395-8277859 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 99

Conread position: 27-493
Cow position: chr7:8278068-8278532 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 256

Conread position: 27-493
Cow position: chr7:11601134-11600669 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 10

Conread position: 29-485
Cow position: chr7:8325627-8326083 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 426, 413

Conread position: 29-490
Cow position: chr7:8242937-8243397 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 326

Conread position: 29-490
Cow position: chr7:8325207-8325668 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 36-349
Cow position: chr7:18390475-18390788 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 197
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 148, 160

Conread position: 37-489
Cow position: chr7:8277824-8278278 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 149

Conread position: 37-491
Cow position: chr7:18390224-18390678 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 291
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 337, 319

Conread position: 42-486
Cow position: chr7:1014838-1015282 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 282
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 62, 74

Conread position: 42-493
Cow position: chr7:42879291-42878842 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 31

Conread position: 50-490
Cow position: chr7:8277335-8277775 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 50-490
Cow position: chr7:8277503-8277943 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 145

Conread position: 53-348
Cow position: chr7:1014267-1014562 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 58, 47

Conread position: 55-490
Cow position: chr7:8277256-8277691 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 58

Conread position: 55-490
Cow position: chr7:8324729-8325164 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 55-490
Cow position: chr7:11434974-11434553 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 68

Conread position: 56-490
Cow position: chr7:11601190-11600756 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 138

Conread position: 57-490
Cow position: chr7:1014685-1015118 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 280
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 127, 147

Conread position: 68-490
Cow position: chr7:8242808-8243230 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 302

Conread position: 142-433
Cow position: chr7:1014272-1014563 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 199
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 42, 54

Conread position: 145-490
Cow position: chr7:1439638-1439985 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 228
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 52, 135

Conread position: 146-493
Cow position: chr7:8277263-8277610 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 232
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 73, 46

Conread position: 202-478
Cow position: chr7:8277233-8277511 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 81

Conread position: 202-483
Cow position: chr7:11434997-11434728 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 152

Conread position: 203-493
Cow position: chr7:3179757-3180047 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 168, 152

Conread position: 211-489
Cow position: chr7:1014257-1014535 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 182
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 163, 145

Show alignments to all cow chromosomes.