Cow genome map

Conread name: rpldo0106_i5.y1

Conread position: 1-325
Cow position: chr17:22589809-22589485 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 254

Conread position: 1-330
Cow position: chr17:22552643-22552314 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 175, 169

Conread position: 2-329
Cow position: chr17:22552055-22551727 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 259

Conread position: 3-329
Cow position: chr17:22552474-22552147 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 102

Conread position: 3-329
Cow position: chr17:22552556-22552231 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 7

Conread position: 5-324
Cow position: chr17:22551800-22551480 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 172

Conread position: 5-329
Cow position: chr17:22551884-22551559 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 5-329
Cow position: chr17:22589972-22589649 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 6-316
Cow position: chr17:22552218-22551908 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 163

Conread position: 6-329
Cow position: chr17:22552722-22552399 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-329
Cow position: chr17:22552890-22552567 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 155

Conread position: 7-299
Cow position: chr17:22589467-22589175 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 7-329
Cow position: chr17:22473548-22473871 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 205
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 8, 0

Conread position: 7-329
Cow position: chr17:22552973-22552651 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-329
Cow position: chr17:22590139-22589817 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 256, 263

Conread position: 7-330
Cow position: chr17:22551965-22551642 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 260, 247

Conread position: 11-326
Cow position: chr17:22553054-22552738 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 13-329
Cow position: chr17:22499090-22498774 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 159, 145

Conread position: 14-329
Cow position: chr17:22590216-22589901 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-326
Cow position: chr17:22451905-22451595 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 194
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 146, 160

Conread position: 16-329
Cow position: chr17:22499171-22498858 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 251, 228

Conread position: 23-313
Cow position: chr17:22498828-22498538 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 187
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 243, 232

Conread position: 23-329
Cow position: chr17:22473232-22473535 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 24-326
Cow position: chr17:22451981-22451679 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 193
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 24-329
Cow position: chr17:22552116-22551811 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-329
Cow position: chr17:22552368-22552063 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-329
Cow position: chr17:22589534-22589229 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 158, 166

Conread position: 24-330
Cow position: chr17:22452401-22452095 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 139, 151

Conread position: 24-330
Cow position: chr17:22499331-22499025 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 199
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 25-325
Cow position: chr17:22552283-22551983 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 151

Conread position: 25-325
Cow position: chr17:22589701-22589401 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-329
Cow position: chr17:22452148-22451844 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 62, 51

Conread position: 25-329
Cow position: chr17:22452232-22451928 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 151

Conread position: 25-329
Cow position: chr17:22452316-22452012 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 51

Conread position: 25-329
Cow position: chr17:22473315-22473619 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 241, 228

Conread position: 25-329
Cow position: chr17:22590289-22589985 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 204
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 242, 229

Conread position: 25-330
Cow position: chr17:22589869-22589564 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 28-329
Cow position: chr17:22553120-22552819 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 30-219
Cow position: chr17:22473740-22473930 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 140, 146

Conread position: 30-329
Cow position: chr17:22473488-22473787 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 237, 214

Conread position: 30-329
Cow position: chr17:22552782-22552483 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 31-330
Cow position: chr17:22473405-22473704 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 235, 224

Conread position: 45-330
Cow position: chr17:22499394-22499109 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 185
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 116, 131

Conread position: 66-329
Cow position: chr17:22553166-22552903 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 54, 62

Conread position: 103-329
Cow position: chr17:22590295-22590069 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 148
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.