Cow genome map
| Conread name: | rpldo0106_i5.y1 |
| Conread position: | 1-326 |
| Cow position: | chr19:23613978-23614303 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 266, 257 |
| Conread position: | 4-329 |
| Cow position: | chr19:23614738-23615062 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 268, 16 |
| Conread position: | 4-329 |
| Cow position: | chr19:23650104-23650428 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 5-216 |
| Cow position: | chr19:14959035-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 10, 174 |
| Conread position: | 6-326 |
| Cow position: | chr19:14960261-14959942 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 110 |
| Conread position: | 6-329 |
| Cow position: | chr19:23614403-23614726 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 7-304 |
| Cow position: | chr19:14959606-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 8, 250 |
| Conread position: | 7-314 |
| Cow position: | chr19:43570009-43569703 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 8, 164 |
| Conread position: | 7-330 |
| Cow position: | chr19:14960344-14960022 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 8-325 |
| Cow position: | chr19:14948335-14948017 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 250 |
| Conread position: | 8-329 |
| Cow position: | chr19:14940204-14940526 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 252 |
| Conread position: | 8-330 |
| Cow position: | chr19:14940372-14940695 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 8-330 |
| Cow position: | chr19:14940456-14940779 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 10, 169 |
| Conread position: | 8-330 |
| Cow position: | chr19:14959194-14958877 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 10-329 |
| Cow position: | chr19:23614154-23614474 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 81 |
| Conread position: | 11-329 |
| Cow position: | chr19:23596831-23597147 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 201 |
| Conread position: | 13-323 |
| Cow position: | chr19:23650028-23650338 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 152, 170 |
| Conread position: | 13-329 |
| Cow position: | chr19:20677921-20678237 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 263, 242 |
| Conread position: | 14-220 |
| Cow position: | chr19:23614915-23615119 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 171, 167 |
| Conread position: | 14-329 |
| Cow position: | chr19:23614579-23614894 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 151, 167 |
| Conread position: | 15-324 |
| Cow position: | chr19:14959270-14958967 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 252, 149 |
| Conread position: | 15-330 |
| Cow position: | chr19:23597337-23597652 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-224 |
| Cow position: | chr19:14940801-14941009 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 147, 160 |
| Conread position: | 16-325 |
| Cow position: | chr19:23614245-23614554 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr19:20677672-20677985 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr19:20678260-20678573 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr19:20678344-20678657 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 149, 159 |
| Conread position: | 16-329 |
| Cow position: | chr19:23613405-23613718 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr19:23613489-23613802 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 148, 160 |
| Conread position: | 16-329 |
| Cow position: | chr19:23613657-23613970 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 239 |
| Conread position: | 16-329 |
| Cow position: | chr19:23649695-23650008 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 154, 164 |
| Conread position: | 16-329 |
| Cow position: | chr19:43570083-43569770 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 16-330 |
| Cow position: | chr19:23649443-23649757 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 154, 160 |
| Conread position: | 16-330 |
| Cow position: | chr19:23649947-23650261 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 154, 165 |
| Conread position: | 17-329 |
| Cow position: | chr19:23597006-23597315 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 17-330 |
| Cow position: | chr19:14960417-14960106 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 158 |
| Conread position: | 17-330 |
| Cow position: | chr19:23614330-23614643 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-323 |
| Cow position: | chr19:14959671-14959373 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 23-329 |
| Cow position: | chr19:20635401-20635095 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-329 |
| Cow position: | chr19:20677763-20678069 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 249, 232 |
| Conread position: | 23-330 |
| Cow position: | chr19:43570160-43569853 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 232, 239 |
| Conread position: | 24-323 |
| Cow position: | chr19:14940725-14941024 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr19:14940305-14940610 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr19:20678184-20678489 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-330 |
| Cow position: | chr19:23613749-23614055 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 159, 140 |
| Conread position: | 25-302 |
| Cow position: | chr19:20678437-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-307 |
| Cow position: | chr19:23597431-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 145, 150 |
| Conread position: | 25-323 |
| Cow position: | chr19:14940558-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-329 |
| Cow position: | chr19:14948401-14948097 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-329 |
| Cow position: | chr19:14960075-14959773 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 25-329 |
| Cow position: | chr19:23597179-23597483 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 25-329 |
| Cow position: | chr19:23614674-23614978 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 227, 242 |
| Conread position: | 25-329 |
| Cow position: | chr19:43570242-43569938 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 242, 232 |
| Conread position: | 25-330 |
| Cow position: | chr19:23613918-23614223 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-329 |
| Cow position: | chr19:14948480-14948181 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 141, 77 |
| Conread position: | 30-303 |
| Cow position: | chr19:14960154-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 237, 229 |
| Conread position: | 30-329 |
| Cow position: | chr19:20635646-20635347 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 140, 146 |
| Conread position: | 31-329 |
| Cow position: | chr19:20677855-20678153 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-330 |
| Cow position: | chr19:14940648-14940947 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-330 |
| Cow position: | chr19:20635477-20635178 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 134, 144 |
| Conread position: | 36-329 |
| Cow position: | chr19:20677608-20677901 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 219, 231 |
| Conread position: | 41-329 |
| Cow position: | chr19:14960477-14960189 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 44-326 |
| Cow position: | chr19:14915962-14916244 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 46-329 |
| Cow position: | chr19:23613351-23613634 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 130 |
Show alignments to all cow chromosomes.