Cow genome map
| Conread name: | rpldo0106_i5.y1 |
| Conread position: | 5-325 |
| Cow position: | chr22:12499165-12499486 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 9, 88 |
| Conread position: | 6-305 |
| Cow position: | chr22:46654141-46654441 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 179 |
| Conread position: | 6-307 |
| Cow position: | chr22:12475589-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 9, 164 |
| Conread position: | 6-329 |
| Cow position: | chr22:12458564-12458240 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-329 |
| Cow position: | chr22:12458394-12458072 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 235, 252 |
| Conread position: | 8-326 |
| Cow position: | chr22:12476343-12476024 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 168 |
| Conread position: | 8-326 |
| Cow position: | chr22:12498916-12499235 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 168 |
| Conread position: | 8-329 |
| Cow position: | chr22:12458226-12457904 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 9, 177 |
| Conread position: | 8-329 |
| Cow position: | chr22:12476091-12475769 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 10-329 |
| Cow position: | chr22:12399628-12399308 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 251 |
| Conread position: | 10-330 |
| Cow position: | chr22:12431356-12431035 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 13, 171 |
| Conread position: | 11-325 |
| Cow position: | chr22:12499509-12499822 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 11-329 |
| Cow position: | chr22:12431775-12431456 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 6, 175 |
| Conread position: | 12-330 |
| Cow position: | chr22:12418976-12418658 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-329 |
| Cow position: | chr22:12399456-12399140 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 152, 163 |
| Conread position: | 13-329 |
| Cow position: | chr22:12431016-12430700 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 84 |
| Conread position: | 13-329 |
| Cow position: | chr22:12431520-12431204 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 13-329 |
| Cow position: | chr22:12475917-12475601 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 157, 163 |
| Conread position: | 13-329 |
| Cow position: | chr22:12499342-12499658 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 157, 163 |
| Conread position: | 13-330 |
| Cow position: | chr22:12458136-12457819 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 89, 83 |
| Conread position: | 16-295 |
| Cow position: | chr22:12399033-12398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 16-302 |
| Cow position: | chr22:11701407-11701694 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 16-303 |
| Cow position: | chr22:12458049-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 154, 160 |
| Conread position: | 16-325 |
| Cow position: | chr22:12385359-12385050 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 149, 160 |
| Conread position: | 16-325 |
| Cow position: | chr22:12399201-12398892 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 16-329 |
| Cow position: | chr22:11641081-11641394 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr22:12385613-12385298 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 16-329 |
| Cow position: | chr22:12399285-12398972 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 16-329 |
| Cow position: | chr22:12399537-12399224 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 251, 244 |
| Conread position: | 16-329 |
| Cow position: | chr22:12431181-12430868 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 164, 153 |
| Conread position: | 16-330 |
| Cow position: | chr22:12476166-12475852 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 164 |
| Conread position: | 16-330 |
| Cow position: | chr22:12499429-12499743 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 154, 164 |
| Conread position: | 21-330 |
| Cow position: | chr22:12431680-12431371 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 79 |
| Conread position: | 22-325 |
| Cow position: | chr22:12476412-12476109 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 23-329 |
| Cow position: | chr22:12498848-12499154 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 24-326 |
| Cow position: | chr22:12431593-12431291 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr22:11666594-11666899 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr22:12431845-12431540 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 148, 152 |
| Conread position: | 24-329 |
| Cow position: | chr22:12432181-12431876 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 146, 159 |
| Conread position: | 24-330 |
| Cow position: | chr22:11701248-11701554 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 163, 157 |
| Conread position: | 25-306 |
| Cow position: | chr22:11641174-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 140, 159 |
| Conread position: | 25-307 |
| Cow position: | chr22:12499690-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 25-314 |
| Cow position: | chr22:12431088-12430799 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-327 |
| Cow position: | chr22:12418795-12418493 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-329 |
| Cow position: | chr22:11640754-11641058 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-329 |
| Cow position: | chr22:11640922-11641226 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 253, 229 |
| Conread position: | 25-329 |
| Cow position: | chr22:11701333-11701637 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-329 |
| Cow position: | chr22:12385436-12385130 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 25-329 |
| Cow position: | chr22:12399108-12398804 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 140, 155 |
| Conread position: | 25-329 |
| Cow position: | chr22:12431424-12431120 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 25-329 |
| Cow position: | chr22:12432012-12431708 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-329 |
| Cow position: | chr22:12432264-12431960 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 147, 151 |
| Conread position: | 25-329 |
| Cow position: | chr22:12432432-12432128 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 25-330 |
| Cow position: | chr22:11640670-11640975 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-330 |
| Cow position: | chr22:12399858-12399559 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 25-330 |
| Cow position: | chr22:12475989-12475684 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-314 |
| Cow position: | chr22:46654501-46654786 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 30-316 |
| Cow position: | chr22:12385177-12384892 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 237, 229 |
| Conread position: | 32-314 |
| Cow position: | chr22:12432341-12432059 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-330 |
| Cow position: | chr22:12419018-12418742 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 129 |
| Conread position: | 104-329 |
| Cow position: | chr22:12419321-12419096 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 140-329 |
| Cow position: | chr22:12458597-12458408 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 35 |
Show alignments to all cow chromosomes.