Cow genome map
| Conread name: | rpldo0106_i5.y1 |
| Conread position: | 1-303 |
| Cow position: | chr23:24560430-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 3-326 |
| Cow position: | chr23:24626349-24626673 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 258 |
| Conread position: | 6-250 |
| Cow position: | chr23:24654161-24654406 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 6-302 |
| Cow position: | chr23:24535749-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 165 |
| Conread position: | 6-327 |
| Cow position: | chr23:24522689-24522370 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 6-329 |
| Cow position: | chr23:24639261-24639584 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 6 |
| Conread position: | 7-329 |
| Cow position: | chr23:25625992-25626314 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 260, 253 |
| Conread position: | 8-308 |
| Cow position: | chr23:24654079-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 8-321 |
| Cow position: | chr23:24626438-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 253 |
| Conread position: | 8-329 |
| Cow position: | chr23:24560508-24560186 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 8-329 |
| Cow position: | chr23:24639346-24639668 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 7, 162 |
| Conread position: | 8-329 |
| Cow position: | chr23:25660197-25660519 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 171 |
| Conread position: | 8-329 |
| Cow position: | chr23:25660281-25660603 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 8-329 |
| Cow position: | chr23:25698694-25698372 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 9, 169 |
| Conread position: | 8-329 |
| Cow position: | chr23:25724081-25723759 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 9-327 |
| Cow position: | chr23:24522521-24522202 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 12-314 |
| Cow position: | chr23:25626665-25626968 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 5, 75 |
| Conread position: | 15-329 |
| Cow position: | chr23:25626168-25626482 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 150, 161 |
| Conread position: | 16-329 |
| Cow position: | chr23:25626586-25626899 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 16-330 |
| Cow position: | chr23:24547191-24546877 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 251, 244 |
| Conread position: | 16-330 |
| Cow position: | chr23:25626253-25626567 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 266, 274 |
| Conread position: | 21-218 |
| Cow position: | chr23:24639864-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 148, 155 |
| Conread position: | 22-329 |
| Cow position: | chr23:25626091-25626398 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 143, 154 |
| Conread position: | 23-253 |
| Cow position: | chr23:24522422-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 152, 146 |
| Conread position: | 23-303 |
| Cow position: | chr23:24546932-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 277, 0 |
| Conread position: | 23-325 |
| Cow position: | chr23:24535983-24535681 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 142, 152 |
| Conread position: | 23-329 |
| Cow position: | chr23:24547016-24546710 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 245, 236 |
| Conread position: | 23-329 |
| Cow position: | chr23:24639698-24640004 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 170, 136 |
| Conread position: | 24-323 |
| Cow position: | chr23:24547099-24546800 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr23:24639615-24639920 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 146, 152 |
| Conread position: | 24-329 |
| Cow position: | chr23:25660382-25660687 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 146, 152 |
| Conread position: | 24-330 |
| Cow position: | chr23:24547267-24546961 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 24-330 |
| Cow position: | chr23:24639531-24639837 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 254, 236 |
| Conread position: | 25-304 |
| Cow position: | chr23:25660467-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-307 |
| Cow position: | chr23:24639784-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 242, 235 |
| Conread position: | 25-326 |
| Cow position: | chr23:24560658-24560357 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 230 |
| Conread position: | 25-329 |
| Cow position: | chr23:24560574-24560270 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-329 |
| Cow position: | chr23:24560826-24560522 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 242, 235 |
| Conread position: | 25-329 |
| Cow position: | chr23:24639448-24639752 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 28-329 |
| Cow position: | chr23:24639199-24639500 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 29-329 |
| Cow position: | chr23:25724143-25723843 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 40-329 |
| Cow position: | chr23:24521983-24521694 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 41-329 |
| Cow position: | chr23:24547334-24547046 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 41-329 |
| Cow position: | chr23:25626362-25626647 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 124, 134 |
| Conread position: | 43-329 |
| Cow position: | chr23:24626306-24626592 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 46-329 |
| Cow position: | chr23:24522567-24522284 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 126, 130 |
| Conread position: | 49-326 |
| Cow position: | chr23:24654037-24654314 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 121, 126 |
| Conread position: | 54-329 |
| Cow position: | chr23:24535868-24535593 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 110, 121 |
| Conread position: | 61-329 |
| Cow position: | chr23:24536029-24535761 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 87-326 |
| Cow position: | chr23:24626266-24626505 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 180, 166 |
| Conread position: | 108-330 |
| Cow position: | chr23:25698677-25698455 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 145-329 |
| Cow position: | chr23:25660167-25660351 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 31 |
Show alignments to all cow chromosomes.