Cow genome map
| Conread name: | rpldo0106_i5.y1 |
| Conread position: | 1-319 |
| Cow position: | chr25:33157098-33156781 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 3-290 |
| Cow position: | chr25:366765-367053 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 5-325 |
| Cow position: | chr25:34769662-34769341 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 256 |
| Conread position: | 6-327 |
| Cow position: | chr25:18642212-18641887 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 174 |
| Conread position: | 6-329 |
| Cow position: | chr25:33298523-33298846 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 165, 178 |
| Conread position: | 6-329 |
| Cow position: | chr25:33299446-33299770 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 171 |
| Conread position: | 6-330 |
| Cow position: | chr25:33305754-33305433 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 110, 34 |
| Conread position: | 6-330 |
| Cow position: | chr25:36800843-36801167 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-329 |
| Cow position: | chr25:33157429-33157106 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 7-330 |
| Cow position: | chr25:33298692-33299015 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 173 |
| Conread position: | 7-330 |
| Cow position: | chr25:33298776-33299099 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-330 |
| Cow position: | chr25:33299028-33299351 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-330 |
| Cow position: | chr25:33305919-33305602 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 87 |
| Conread position: | 7-330 |
| Cow position: | chr25:36801672-36801991 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 8-307 |
| Cow position: | chr25:33127931-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 9, 248 |
| Conread position: | 8-329 |
| Cow position: | chr25:33127763-33128085 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 10, 253 |
| Conread position: | 8-329 |
| Cow position: | chr25:34447067-34447389 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 9, 253 |
| Conread position: | 8-329 |
| Cow position: | chr25:34447319-34447641 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 9-330 |
| Cow position: | chr25:34769910-34769588 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 7, 251 |
| Conread position: | 10-330 |
| Cow position: | chr25:34714165-34714486 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 6, 132 |
| Conread position: | 12-329 |
| Cow position: | chr25:33157507-33157190 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 67, 78 |
| Conread position: | 12-330 |
| Cow position: | chr25:33144899-33145214 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 158, 132 |
| Conread position: | 16-220 |
| Cow position: | chr25:23420605-23420809 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 154, 160 |
| Conread position: | 16-287 |
| Cow position: | chr25:33299625-33299889 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 261, 194 |
| Conread position: | 16-290 |
| Cow position: | chr25:326551-326825 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 251, 238 |
| Conread position: | 16-308 |
| Cow position: | chr25:346502-346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-325 |
| Cow position: | chr25:23420437-23420746 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 149, 164 |
| Conread position: | 16-329 |
| Cow position: | chr25:23420353-23420666 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr25:33157167-33156854 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 154, 160 |
| Conread position: | 16-329 |
| Cow position: | chr25:33298869-33299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr25:36800769-36801082 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 251, 238 |
| Conread position: | 16-330 |
| Cow position: | chr25:33298953-33299267 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 251, 238 |
| Conread position: | 16-330 |
| Cow position: | chr25:33299121-33299435 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 142 |
| Conread position: | 19-325 |
| Cow position: | chr25:23420524-23420830 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 151, 161 |
| Conread position: | 20-329 |
| Cow position: | chr25:33305824-33305519 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 22-330 |
| Cow position: | chr25:36801027-36801335 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 248, 233 |
| Conread position: | 23-310 |
| Cow position: | chr25:34433501-34433785 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 157, 105 |
| Conread position: | 23-326 |
| Cow position: | chr25:34447503-34447799 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 100 |
| Conread position: | 24-253 |
| Cow position: | chr25:34769474-34769245 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 141, 152 |
| Conread position: | 24-304 |
| Cow position: | chr25:326985-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 24-329 |
| Cow position: | chr25:33299213-33299518 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 147, 152 |
| Conread position: | 24-329 |
| Cow position: | chr25:33299381-33299686 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 24-329 |
| Cow position: | chr25:34770062-34769757 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 242, 231 |
| Conread position: | 24-329 |
| Cow position: | chr25:36800945-36801250 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 243, 220 |
| Conread position: | 24-329 |
| Cow position: | chr25:36801521-36801826 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 148, 152 |
| Conread position: | 24-329 |
| Cow position: | chr25:36801605-36801910 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-330 |
| Cow position: | chr25:33299549-33299851 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 248, 230 |
| Conread position: | 24-330 |
| Cow position: | chr25:34447252-34447558 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 251, 231 |
| Conread position: | 25-216 |
| Cow position: | chr25:33145245-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-326 |
| Cow position: | chr25:22235976-22236277 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 218, 239 |
| Conread position: | 25-326 |
| Cow position: | chr25:33157242-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 242, 235 |
| Conread position: | 25-329 |
| Cow position: | chr25:33145077-33145381 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 25-329 |
| Cow position: | chr25:34447169-34447473 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 25-329 |
| Cow position: | chr25:34769809-34769505 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 151, 136 |
| Conread position: | 25-330 |
| Cow position: | chr25:33127865-33128170 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 25-330 |
| Cow position: | chr25:34769977-34769672 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-329 |
| Cow position: | chr25:36800611-36800914 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 184, 177 |
| Conread position: | 27-329 |
| Cow position: | chr25:33306397-33306104 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 29-329 |
| Cow position: | chr25:36800530-36800830 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 105, 90 |
| Conread position: | 35-329 |
| Cow position: | chr25:33305973-33305687 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 232, 28 |
| Conread position: | 37-329 |
| Cow position: | chr25:33298470-33298762 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 41-329 |
| Cow position: | chr25:36801454-36801742 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-308 |
| Cow position: | chr25:22235828-22236091 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 46-330 |
| Cow position: | chr25:34447022-34447306 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 222, 208 |
| Conread position: | 60-330 |
| Cow position: | chr25:33127732-33128002 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-329 |
| Cow position: | chr25:23420319-23420582 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 104, 115 |
Show alignments to all cow chromosomes.