Cow genome map
| Conread name: | rpldo0106_i5.y1 |
| Conread position: | 1-246 |
| Cow position: | chr28:9298940-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-329 |
| Cow position: | chr28:7757371-7757699 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-329 |
| Cow position: | chr28:7757457-7757783 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 7 |
| Conread position: | 2-329 |
| Cow position: | chr28:9253060-9253386 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 7 |
| Conread position: | 2-330 |
| Cow position: | chr28:7757541-7757868 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 8 |
| Conread position: | 4-314 |
| Cow position: | chr28:7810633-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 165, 172 |
| Conread position: | 5-329 |
| Cow position: | chr28:9290295-9290617 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 255, 80 |
| Conread position: | 6-329 |
| Cow position: | chr28:7810476-7810790 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 59 |
| Conread position: | 7-208 |
| Cow position: | chr28:7758133-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 7-292 |
| Cow position: | chr28:7758049-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-294 |
| Cow position: | chr28:11333756-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 157, 169 |
| Conread position: | 7-326 |
| Cow position: | chr28:9290215-9290530 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 7-329 |
| Cow position: | chr28:7757713-7758035 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 7-329 |
| Cow position: | chr28:7757881-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 267, 255 |
| Conread position: | 7-329 |
| Cow position: | chr28:9252980-9253302 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 157, 169 |
| Conread position: | 7-329 |
| Cow position: | chr28:9253232-9253554 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr28:7757799-7758119 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 10-329 |
| Cow position: | chr28:7810395-7810706 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 127 |
| Conread position: | 13-222 |
| Cow position: | chr28:9253406-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 148, 163 |
| Conread position: | 13-325 |
| Cow position: | chr28:9298619-9298928 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 158, 46 |
| Conread position: | 14-314 |
| Cow position: | chr28:9289808-9290104 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 101, 71 |
| Conread position: | 16-303 |
| Cow position: | chr28:9253325-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 244 |
| Conread position: | 16-322 |
| Cow position: | chr28:7758462-7758768 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 226, 241 |
| Conread position: | 16-324 |
| Cow position: | chr28:7758546-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 156, 160 |
| Conread position: | 16-329 |
| Cow position: | chr28:7810561-7810874 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr28:9253157-9253470 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-329 |
| Cow position: | chr28:9290142-9290450 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 16-329 |
| Cow position: | chr28:9298704-9299015 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 250, 104 |
| Conread position: | 16-329 |
| Cow position: | chr28:34673409-34673722 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 21-163 |
| Cow position: | chr28:9290477-9290619 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-304 |
| Cow position: | chr28:9299282-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-329 |
| Cow position: | chr28:9252911-9253218 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 23-330 |
| Cow position: | chr28:7810325-7810623 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 156, 146 |
| Conread position: | 23-330 |
| Cow position: | chr28:9299201-9299505 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 23-330 |
| Cow position: | chr28:33210289-33210597 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 137, 153 |
| Conread position: | 24-325 |
| Cow position: | chr28:11333991-11333690 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr28:7757646-7757951 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr28:9290066-9290367 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 242, 147 |
| Conread position: | 25-309 |
| Cow position: | chr28:11333906-11333622 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 247, 234 |
| Conread position: | 25-314 |
| Cow position: | chr28:7758387-7758676 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 242, 223 |
| Conread position: | 25-329 |
| Cow position: | chr28:7757983-7758287 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 229, 233 |
| Conread position: | 25-330 |
| Cow position: | chr28:34696227-34696532 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 28-313 |
| Cow position: | chr28:9290401-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 244, 63 |
| Conread position: | 41-306 |
| Cow position: | chr28:34696327-34696590 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 46-326 |
| Cow position: | chr28:33210228-33210508 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 124, 130 |
| Conread position: | 48-329 |
| Cow position: | chr28:7757334-7757615 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 56-329 |
| Cow position: | chr28:7758334-7758607 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-330 |
| Cow position: | chr28:34695841-34696112 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 209, 196 |
| Conread position: | 66-314 |
| Cow position: | chr28:7810284-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 25 |
Show alignments to all cow chromosomes.