Cow genome map
| Conread name: | rpldo0106_i5.y1 |
| Conread position: | 1-253 |
| Cow position: | chr7:11600728-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 14, 5 |
| Conread position: | 1-330 |
| Cow position: | chr7:11601148-11600819 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 262, 253 |
| Conread position: | 1-330 |
| Cow position: | chr7:42878733-42878404 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 175 |
| Conread position: | 3-329 |
| Cow position: | chr7:1015063-1015390 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 167 |
| Conread position: | 5-329 |
| Cow position: | chr7:42878645-42878321 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 252 |
| Conread position: | 6-206 |
| Cow position: | chr7:42878476-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 6-303 |
| Cow position: | chr7:3180580-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 6-329 |
| Cow position: | chr7:1014400-1014718 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 212 |
| Conread position: | 6-329 |
| Cow position: | chr7:1439935-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 86, 37 |
| Conread position: | 7-329 |
| Cow position: | chr7:42878811-42878489 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-329 |
| Cow position: | chr7:42878895-42878573 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 247 |
| Conread position: | 7-329 |
| Cow position: | chr7:42879147-42878825 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-330 |
| Cow position: | chr7:42879231-42878908 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-326 |
| Cow position: | chr7:18390291-18390610 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 10, 169 |
| Conread position: | 8-329 |
| Cow position: | chr7:3179994-3180316 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 10-326 |
| Cow position: | chr7:1014902-1015219 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 11-329 |
| Cow position: | chr7:1439856-1440173 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 165, 109 |
| Conread position: | 16-290 |
| Cow position: | chr7:42878550-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 149, 160 |
| Conread position: | 16-307 |
| Cow position: | chr7:1015161-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 16-329 |
| Cow position: | chr7:3179835-3180148 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 251, 244 |
| Conread position: | 16-329 |
| Cow position: | chr7:3180087-3180400 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 16-329 |
| Cow position: | chr7:3180171-3180484 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 149, 159 |
| Conread position: | 16-329 |
| Cow position: | chr7:18390216-18390529 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 16-330 |
| Cow position: | chr7:3179919-3180233 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 17-329 |
| Cow position: | chr7:1439441-1439756 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 151, 155 |
| Conread position: | 20-314 |
| Cow position: | chr7:11601213-11600919 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-273 |
| Cow position: | chr7:18390559-18390809 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 23-306 |
| Cow position: | chr7:1014334-1014617 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 243, 230 |
| Conread position: | 23-329 |
| Cow position: | chr7:1014832-1015138 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 158, 162 |
| Conread position: | 23-329 |
| Cow position: | chr7:3180346-3180652 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 159, 171 |
| Conread position: | 24-262 |
| Cow position: | chr7:1440036-1440274 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-325 |
| Cow position: | chr7:3180263-3180564 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-325 |
| Cow position: | chr7:42879046-42878745 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr7:8277658-8277963 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 208, 212 |
| Conread position: | 24-329 |
| Cow position: | chr7:8277910-8278215 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 24-329 |
| Cow position: | chr7:8325803-8326108 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 82 |
| Conread position: | 24-329 |
| Cow position: | chr7:18390056-18390361 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 24-329 |
| Cow position: | chr7:18390140-18390445 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 24-330 |
| Cow position: | chr7:1439786-1440090 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 24-330 |
| Cow position: | chr7:42878962-42878656 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 231 |
| Conread position: | 25-329 |
| Cow position: | chr7:1014750-1015054 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 230, 241 |
| Conread position: | 25-329 |
| Cow position: | chr7:1015002-1015306 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 25-329 |
| Cow position: | chr7:11600872-11600568 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 238, 230 |
| Conread position: | 25-329 |
| Cow position: | chr7:18390477-18390781 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 30-330 |
| Cow position: | chr7:11600951-11600651 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 237, 230 |
| Conread position: | 36-304 |
| Cow position: | chr7:3180527-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 129, 139 |
| Conread position: | 41-329 |
| Cow position: | chr7:1014268-1014556 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 43-314 |
| Cow position: | chr7:8278097-8278368 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 147 |
| Conread position: | 45-329 |
| Cow position: | chr7:42879277-42878993 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 40 |
| Conread position: | 52-329 |
| Cow position: | chr7:42879354-42879077 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 7 |
Show alignments to all cow chromosomes.