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Cow genome map

           
Conread name:
           
rpldo0136_h2.y1
        

               
Conread position:
               
48-470
               

               
Cow position:
               
chr1:11771830-11772259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
64-467
               

               
Cow position:
               
chr1:41697282-41696879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
65-466
               

               
Cow position:
               
chr1:78811261-78810861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
65-521
               

               
Cow position:
               
chr1:52496994-52496530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
66-377
               

               
Cow position:
               
chr1:46031201-46030870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
20, 145
               

               
Conread position:
               
67-340
               

               
Cow position:
               
chr1:31357280-31357564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
67-416
               

               
Cow position:
               
chr1:11172597-11172246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
68-466
               

               
Cow position:
               
chr1:61742234-61742638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
68-495
               

               
Cow position:
               
chr1:25387284-25386845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
69-534
               

               
Cow position:
               
chr1:22730955-22730501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 48
               

               
Conread position:
               
70-248
               

               
Cow position:
               
chr1:25021846-25022034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
71-312
               

               
Cow position:
               
chr1:66752413-66752652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
71-535
               

               
Cow position:
               
chr1:38277805-38278305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
71-543
               

               
Cow position:
               
chr1:874884-874376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
72-538
               

               
Cow position:
               
chr1:25383889-25383398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
73-262
               

               
Cow position:
               
chr1:79663235-79663411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 39
               

               
Conread position:
               
73-447
               

               
Cow position:
               
chr1:57575543-57575918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
73-465
               

               
Cow position:
               
chr1:10941879-10942265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
73-465
               

               
Cow position:
               
chr1:10964507-10964121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
73-528
               

               
Cow position:
               
chr1:50930761-50931222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
73-534
               

               
Cow position:
               
chr1:87888617-87888142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
74-576
               

               
Cow position:
               
chr1:49433039-49433566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
75-262
               

               
Cow position:
               
chr1:84787486-84787297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
75-375
               

               
Cow position:
               
chr1:49824839-49825157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
75-534
               

               
Cow position:
               
chr1:10778779-10778315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
75-557
               

               
Cow position:
               
chr1:79164865-79165374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
76-392
               

               
Cow position:
               
chr1:56226008-56225685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 242
               

               
Conread position:
               
76-463
               

               
Cow position:
               
chr1:85688400-85688014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 138
               

               
Conread position:
               
76-536
               

               
Cow position:
               
chr1:63390542-63391033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
76-572
               

               
Cow position:
               
chr1:54478532-54478025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
77-334
               

               
Cow position:
               
chr1:60045209-60044939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
77-336
               

               
Cow position:
               
chr1:84134-83886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
77-400
               

               
Cow position:
               
chr1:78794022-78794337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
77-410
               

               
Cow position:
               
chr1:20104480-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
77-447
               

               
Cow position:
               
chr1:21508623-21508231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 324
               

               
Conread position:
               
77-452
               

               
Cow position:
               
chr1:59519136-59518756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
77-531
               

               
Cow position:
               
chr1:101822291-101822752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
78-437
               

               
Cow position:
               
chr1:22526087-22525730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
78-456
               

               
Cow position:
               
chr1:96081700-96081315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
78-519
               

               
Cow position:
               
chr1:51446105-51445635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
78-538
               

               
Cow position:
               
chr1:66898270-66898739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
27, 205
               

               
Conread position:
               
78-541
               

               
Cow position:
               
chr1:68845287-68845745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
79-282
               

               
Cow position:
               
chr1:20537429-20537212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 185
               

               
Conread position:
               
79-407
               

               
Cow position:
               
chr1:67919354-67919010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
79-411
               

               
Cow position:
               
chr1:47790449-47790787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
79-428
               

               
Cow position:
               
chr1:43855513-43855160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
79-453
               

               
Cow position:
               
chr1:54206607-54206984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
79-463
               

               
Cow position:
               
chr1:7443202-7442813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
79-466
               

               
Cow position:
               
chr1:70538826-70538429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
79-466
               

               
Cow position:
               
chr1:73960916-73960527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
79-467
               

               
Cow position:
               
chr1:24132851-24133231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
79-521
               

               
Cow position:
               
chr1:78857114-78857568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 54
               

               
Conread position:
               
79-534
               

               
Cow position:
               
chr1:72068610-72069088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
79-541
               

               
Cow position:
               
chr1:52435500-52435006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
16, 202
               

               
Conread position:
               
79-543
               

               
Cow position:
               
chr1:48105212-48105700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
79-545
               

               
Cow position:
               
chr1:36998407-36997930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 225
               

               
Conread position:
               
79-546
               

               
Cow position:
               
chr1:77462563-77462096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
80-305
               

               
Cow position:
               
chr1:2462582-2462367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
71, 39
               

               
Conread position:
               
80-328
               

               
Cow position:
               
chr1:102768397-102768142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
80-348
               

               
Cow position:
               
chr1:22035829-22035548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 219
               

               
Conread position:
               
80-351
               

               
Cow position:
               
chr1:78066332-78066602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
80-367
               

               
Cow position:
               
chr1:43547848-43548137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
80-435
               

               
Cow position:
               
chr1:91023257-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 44
               

               
Conread position:
               
80-448
               

               
Cow position:
               
chr1:72105624-72105254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
80-484
               

               
Cow position:
               
chr1:484242-484657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
80-533
               

               
Cow position:
               
chr1:74083968-74084447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
80-537
               

               
Cow position:
               
chr1:37321799-37322268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
80-538
               

               
Cow position:
               
chr1:29626700-29627176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 19
               

               
Conread position:
               
80-585
               

               
Cow position:
               
chr1:61885133-61884602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
81-272
               

               
Cow position:
               
chr1:63461088-63460895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
81-326
               

               
Cow position:
               
chr1:95835572-95835836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
81-349
               

               
Cow position:
               
chr1:101507568-101507296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
81-364
               

               
Cow position:
               
chr1:59147138-59147422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
81-374
               

               
Cow position:
               
chr1:100474449-100474145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
81-396
               

               
Cow position:
               
chr1:628178-627851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
81-400
               

               
Cow position:
               
chr1:56618446-56618763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
81-403
               

               
Cow position:
               
chr1:42482421-42482087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-431
               

               
Cow position:
               
chr1:100817760-100817415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
81-455
               

               
Cow position:
               
chr1:53370294-53369911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
81-460
               

               
Cow position:
               
chr1:65025480-65025089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
81-461
               

               
Cow position:
               
chr1:7748426-7748044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
81-461
               

               
Cow position:
               
chr1:7752590-7752210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
81-463
               

               
Cow position:
               
chr1:21561241-21560859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
81-465
               

               
Cow position:
               
chr1:20582132-20581775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
149, 27
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr1:6078117-6077720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr1:13547762-13548164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr1:20667540-20667916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr1:24542349-24542756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 198
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr1:64803876-64804282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 282
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr1:81515459-81515065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
81-467
               

               
Cow position:
               
chr1:23968844-23969211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 168
               

               
Conread position:
               
81-504
               

               
Cow position:
               
chr1:22628436-22628859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
81-523
               

               
Cow position:
               
chr1:84238910-84239355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 157
               

               
Conread position:
               
81-524
               

               
Cow position:
               
chr1:63434576-63435052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 191
               

               
Conread position:
               
81-524
               

               
Cow position:
               
chr1:92197664-92197211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 172
               

               
Conread position:
               
81-531
               

               
Cow position:
               
chr1:31934725-31934257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
35, 199
               

               
Conread position:
               
81-534
               

               
Cow position:
               
chr1:97232181-97231717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
81-535
               

               
Cow position:
               
chr1:82880850-82880405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
81-535
               

               
Cow position:
               
chr1:91065947-91066406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 26
               

               
Conread position:
               
81-541
               

               
Cow position:
               
chr1:72011600-72012067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 234
               

               
Conread position:
               
81-543
               

               
Cow position:
               
chr1:43505742-43505253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
81-543
               

               
Cow position:
               
chr1:82936386-82936849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
81-547
               

               
Cow position:
               
chr1:19466246-19465790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
81-586
               

               
Cow position:
               
chr1:3923594-3924106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
81-588
               

               
Cow position:
               
chr1:40600245-40599743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
82-265
               

               
Cow position:
               
chr1:75227116-75227297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
82-315
               

               
Cow position:
               
chr1:6731398-6731155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
82-439
               

               
Cow position:
               
chr1:46030145-46030508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
82-444
               

               
Cow position:
               
chr1:42545581-42545940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
82-447
               

               
Cow position:
               
chr1:88913529-88913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
82-452
               

               
Cow position:
               
chr1:8287411-8287778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
82-452
               

               
Cow position:
               
chr1:41182055-41181679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
82-460
               

               
Cow position:
               
chr1:41289560-41289932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
82-461
               

               
Cow position:
               
chr1:65665249-65664893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
82-464
               

               
Cow position:
               
chr1:61005348-61005738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr1:6304658-6305043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr1:61391587-61391967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
82-467
               

               
Cow position:
               
chr1:68618731-68619113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 36
               

               
Conread position:
               
82-477
               

               
Cow position:
               
chr1:71665714-71666135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 180
               

               
Conread position:
               
82-480
               

               
Cow position:
               
chr1:14980929-14981310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
144, 31
               

               
Conread position:
               
82-480
               

               
Cow position:
               
chr1:86110536-86110922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
82-487
               

               
Cow position:
               
chr1:7971623-7971218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
82-531
               

               
Cow position:
               
chr1:2075141-2075584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
82-534
               

               
Cow position:
               
chr1:42887060-42887522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
82-537
               

               
Cow position:
               
chr1:24777775-24778221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
31, 147
               

               
Conread position:
               
82-538
               

               
Cow position:
               
chr1:1878243-1877766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 185
               

               
Conread position:
               
82-543
               

               
Cow position:
               
chr1:100552186-100551702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 355
               

               
Conread position:
               
82-556
               

               
Cow position:
               
chr1:1980901-1981392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
83-377
               

               
Cow position:
               
chr1:30189365-30189057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 195
               

               
Conread position:
               
83-400
               

               
Cow position:
               
chr1:98583965-98583646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
83-419
               

               
Cow position:
               
chr1:78079942-78079596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 309
               

               
Conread position:
               
83-443
               

               
Cow position:
               
chr1:21955154-21955529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
83-460
               

               
Cow position:
               
chr1:23488284-23488681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 248
               

               
Conread position:
               
83-461
               

               
Cow position:
               
chr1:20544475-20544122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 28
               

               
Conread position:
               
83-466
               

               
Cow position:
               
chr1:81568811-81569209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
83-467
               

               
Cow position:
               
chr1:43340412-43340798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
83-479
               

               
Cow position:
               
chr1:68763476-68763871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
83-488
               

               
Cow position:
               
chr1:101280530-101280910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
83-534
               

               
Cow position:
               
chr1:96964538-96964058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 200
               

               
Conread position:
               
83-539
               

               
Cow position:
               
chr1:75745068-75744596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
83-543
               

               
Cow position:
               
chr1:1956130-1956597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
83-545
               

               
Cow position:
               
chr1:82378980-82378524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
141, 28
               

               
Conread position:
               
83-546
               

               
Cow position:
               
chr1:33720323-33719846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
83-564
               

               
Cow position:
               
chr1:13414230-13413739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
147, 54
               

               
Conread position:
               
84-358
               

               
Cow position:
               
chr1:186074-186347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
84-462
               

               
Cow position:
               
chr1:44507185-44506797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
84-463
               

               
Cow position:
               
chr1:27145437-27145825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
84-536
               

               
Cow position:
               
chr1:21578027-21577544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
84-543
               

               
Cow position:
               
chr1:54258787-54258300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
85-309
               

               
Cow position:
               
chr1:42152272-42152505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
85-461
               

               
Cow position:
               
chr1:541992-541632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
85-467
               

               
Cow position:
               
chr1:32340998-32341383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
31, 180
               

               
Conread position:
               
85-467
               

               
Cow position:
               
chr1:46839807-46839419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
85-538
               

               
Cow position:
               
chr1:54199180-54199641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 18
               

               
Conread position:
               
86-235
               

               
Cow position:
               
chr1:39703165-39703020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
86-392
               

               
Cow position:
               
chr1:75250317-75250008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
86-466
               

               
Cow position:
               
chr1:54156519-54156915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
87-348
               

               
Cow position:
               
chr1:62235242-62235508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
87-402
               

               
Cow position:
               
chr1:98512126-98511813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
87-437
               

               
Cow position:
               
chr1:23512462-23512804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
143, 19
               

               
Conread position:
               
89-412
               

               
Cow position:
               
chr1:72813830-72813488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
89-438
               

               
Cow position:
               
chr1:89449100-89448750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
89-467
               

               
Cow position:
               
chr1:92010499-92010138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
89-545
               

               
Cow position:
               
chr1:19144724-19145188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
89-545
               

               
Cow position:
               
chr1:64302037-64302502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
89-591
               

               
Cow position:
               
chr1:34856412-34856945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
91-419
               

               
Cow position:
               
chr1:79640089-79640421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 36
               

               
Conread position:
               
91-466
               

               
Cow position:
               
chr1:35162615-35162229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
91-543
               

               
Cow position:
               
chr1:100422020-100421576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
91-562
               

               
Cow position:
               
chr1:68817590-68818079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
26, 171
               

               
Conread position:
               
94-423
               

               
Cow position:
               
chr1:47886275-47886624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 8
               

               
Conread position:
               
94-524
               

               
Cow position:
               
chr1:71136339-71135904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
96-396
               

               
Cow position:
               
chr1:6972716-6972421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
134, 24
               

               
Conread position:
               
96-434
               

               
Cow position:
               
chr1:39224733-39225071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
97-228
               

               
Cow position:
               
chr1:37503679-37503808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
97-309
               

               
Cow position:
               
chr1:49980913-49980690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 151
               

               
Conread position:
               
97-429
               

               
Cow position:
               
chr1:86056873-86057199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
97-452
               

               
Cow position:
               
chr1:100399998-100400366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
11, 112
               

               
Conread position:
               
97-460
               

               
Cow position:
               
chr1:55428749-55429128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
97-466
               

               
Cow position:
               
chr1:46939672-46940036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
97-467
               

               
Cow position:
               
chr1:69415524-69415893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
97-524
               

               
Cow position:
               
chr1:39417926-39418367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
97-536
               

               
Cow position:
               
chr1:43352449-43352908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
97-538
               

               
Cow position:
               
chr1:33330897-33331334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 150
               

               
Conread position:
               
97-539
               

               
Cow position:
               
chr1:72034724-72035191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
97-542
               

               
Cow position:
               
chr1:77620753-77620285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
97-543
               

               
Cow position:
               
chr1:48443986-48444448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 227
               

               
Conread position:
               
97-563
               

               
Cow position:
               
chr1:99609572-99609077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 160
               

               
Conread position:
               
97-569
               

               
Cow position:
               
chr1:93110427-93110919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
98-377
               

               
Cow position:
               
chr1:22943825-22944115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
99-389
               

               
Cow position:
               
chr1:42541794-42541495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
99-466
               

               
Cow position:
               
chr1:74955829-74956198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
99-527
               

               
Cow position:
               
chr1:39426814-39427233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
99-536
               

               
Cow position:
               
chr1:46218753-46218322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
99-591
               

               
Cow position:
               
chr1:31871612-31871110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
101-286
               

               
Cow position:
               
chr1:11770041-11770232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 156
               

               
Conread position:
               
101-536
               

               
Cow position:
               
chr1:69265000-69264561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 166
               

               
Conread position:
               
102-311
               

               
Cow position:
               
chr1:73721564-73721338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 99
               

               
Conread position:
               
102-356
               

               
Cow position:
               
chr1:19515417-19515683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 231
               

               
Conread position:
               
102-444
               

               
Cow position:
               
chr1:22192970-22192607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
102-445
               

               
Cow position:
               
chr1:64572714-64572356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
102-447
               

               
Cow position:
               
chr1:42175928-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 205
               

               
Conread position:
               
102-452
               

               
Cow position:
               
chr1:28563361-28563733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 171
               

               
Conread position:
               
102-452
               

               
Cow position:
               
chr1:40192503-40192847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
102-456
               

               
Cow position:
               
chr1:34771299-34771673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
102-456
               

               
Cow position:
               
chr1:96472615-96472272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
102-462
               

               
Cow position:
               
chr1:15334088-15333707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 168
               

               
Conread position:
               
102-463
               

               
Cow position:
               
chr1:21787524-21787155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
102-463
               

               
Cow position:
               
chr1:33206674-33207046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
14, 198
               

               
Conread position:
               
102-466
               

               
Cow position:
               
chr1:28177180-28176825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 58
               

               
Conread position:
               
102-466
               

               
Cow position:
               
chr1:42139039-42138692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
102-466
               

               
Cow position:
               
chr1:75383163-75382817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
102-466
               

               
Cow position:
               
chr1:98551909-98551538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
102-520
               

               
Cow position:
               
chr1:52052533-52052948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
102-531
               

               
Cow position:
               
chr1:95101151-95100707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
102-533
               

               
Cow position:
               
chr1:68826724-68827163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
102-536
               

               
Cow position:
               
chr1:56225666-56225218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
102-536
               

               
Cow position:
               
chr1:88338850-88338436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
102-555
               

               
Cow position:
               
chr1:42555443-42554991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
102-566
               

               
Cow position:
               
chr1:6166432-6165961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
103-321
               

               
Cow position:
               
chr1:81481186-81481416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 157
               

               
Conread position:
               
103-452
               

               
Cow position:
               
chr1:49317302-49317661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
103-466
               

               
Cow position:
               
chr1:51394617-51394250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 274
               

               
Conread position:
               
105-278
               

               
Cow position:
               
chr1:81638736-81638559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
105-456
               

               
Cow position:
               
chr1:53623151-53622794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
105-466
               

               
Cow position:
               
chr1:95499299-95499670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
11, 208
               

               
Conread position:
               
108-463
               

               
Cow position:
               
chr1:95177112-95176764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
8, 47
               

               
Conread position:
               
108-554
               

               
Cow position:
               
chr1:7740137-7739693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 182
               

               
Conread position:
               
109-423
               

               
Cow position:
               
chr1:8128786-8129102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
109-442
               

               
Cow position:
               
chr1:17196432-17196783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 176
               

               
Conread position:
               
112-452
               

               
Cow position:
               
chr1:95558228-95557872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 189
               

               
Conread position:
               
113-460
               

               
Cow position:
               
chr1:99642182-99642536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 180
               

               
Conread position:
               
114-535
               

               
Cow position:
               
chr1:71119707-71119252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
114-559
               

               
Cow position:
               
chr1:80764368-80764817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
115-261
               

               
Cow position:
               
chr1:70044529-70044379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
115-274
               

               
Cow position:
               
chr1:70416575-70416745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
115-275
               

               
Cow position:
               
chr1:63905079-63905245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
115-297
               

               
Cow position:
               
chr1:32014376-32014190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
115-304
               

               
Cow position:
               
chr1:61011360-61011166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
115-305
               

               
Cow position:
               
chr1:242737-242541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
115-306
               

               
Cow position:
               
chr1:95618826-95618625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
115-309
               

               
Cow position:
               
chr1:63079186-63078990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
115-311
               

               
Cow position:
               
chr1:5006329-5006140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
115-311
               

               
Cow position:
               
chr1:5636887-5637081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
115-325
               

               
Cow position:
               
chr1:67585736-67585524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 94
               

               
Conread position:
               
115-339
               

               
Cow position:
               
chr1:500361-500121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
115-348
               

               
Cow position:
               
chr1:97962810-97962582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
115-349
               

               
Cow position:
               
chr1:88360070-88359819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
50, 209
               

               
Conread position:
               
115-351
               

               
Cow position:
               
chr1:33998934-33998693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 147
               

               
Conread position:
               
115-356
               

               
Cow position:
               
chr1:30983307-30983559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 165
               

               
Conread position:
               
115-364
               

               
Cow position:
               
chr1:37726229-37726497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
115-364
               

               
Cow position:
               
chr1:102754036-102753776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
115-371
               

               
Cow position:
               
chr1:45223761-45223496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
58, 159
               

               
Conread position:
               
115-394
               

               
Cow position:
               
chr1:26427695-26427968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
115-401
               

               
Cow position:
               
chr1:81582280-81582008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
115-410
               

               
Cow position:
               
chr1:3607980-3607688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
100, 160
               

               
Conread position:
               
115-410
               

               
Cow position:
               
chr1:43311583-43311898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 249
               

               
Conread position:
               
115-425
               

               
Cow position:
               
chr1:85141569-85141869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
115-431
               

               
Cow position:
               
chr1:2975804-2976138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
55, 196
               

               
Conread position:
               
115-434
               

               
Cow position:
               
chr1:101788912-101789218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
115-437
               

               
Cow position:
               
chr1:65318762-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
115-439
               

               
Cow position:
               
chr1:23186617-23186948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
115-441
               

               
Cow position:
               
chr1:76612947-76613285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 245
               

               
Conread position:
               
115-443
               

               
Cow position:
               
chr1:63530744-63530421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
54, 209
               

               
Conread position:
               
115-444
               

               
Cow position:
               
chr1:33409438-33409784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
115-444
               

               
Cow position:
               
chr1:42398011-42398353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
115-447
               

               
Cow position:
               
chr1:101866315-101866656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
115-448
               

               
Cow position:
               
chr1:14308844-14309198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 172
               

               
Conread position:
               
115-451
               

               
Cow position:
               
chr1:27114822-27114504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
115-451
               

               
Cow position:
               
chr1:68863204-68862871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr1:23100067-23099735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr1:38754102-38753753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 184
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr1:43388869-43389212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr1:77720075-77720396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr1:84905875-84906232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 295
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr1:101267816-101268168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
49, 149
               

               
Conread position:
               
115-459
               

               
Cow position:
               
chr1:93528879-93528523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 123
               

               
Conread position:
               
115-459
               

               
Cow position:
               
chr1:102349574-102349923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
115-462
               

               
Cow position:
               
chr1:24597838-24597482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 105
               

               
Conread position:
               
115-462
               

               
Cow position:
               
chr1:89388528-89388161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 261
               

               
Conread position:
               
115-463
               

               
Cow position:
               
chr1:45555550-45555192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr1:16766901-16767259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
48, 166
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr1:18936652-18937008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr1:70435171-70434825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr1:71078777-71079131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
50, 144
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr1:87072879-87072530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr1:89509743-89510107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 230
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr1:93499804-93499448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr1:20000571-20000927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr1:57119181-57119518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr1:95764927-95765264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
118, 47
               

               
Conread position:
               
115-519
               

               
Cow position:
               
chr1:56477770-56477351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 289
               

               
Conread position:
               
115-524
               

               
Cow position:
               
chr1:11913696-11914126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
37, 163
               

               
Conread position:
               
115-524
               

               
Cow position:
               
chr1:47658533-47658106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
57, 237
               

               
Conread position:
               
115-527
               

               
Cow position:
               
chr1:71045920-71045503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 65
               

               
Conread position:
               
115-531
               

               
Cow position:
               
chr1:7233473-7233060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
115-531
               

               
Cow position:
               
chr1:63504499-63504083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
119, 46
               

               
Conread position:
               
115-531
               

               
Cow position:
               
chr1:94379169-94378777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
115-533
               

               
Cow position:
               
chr1:100324573-100324982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
62, 95
               

               
Conread position:
               
115-533
               

               
Cow position:
               
chr1:100741467-100741039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
115-534
               

               
Cow position:
               
chr1:45019621-45020060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 265
               

               
Conread position:
               
115-534
               

               
Cow position:
               
chr1:97755686-97755265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
157, 61
               

               
Conread position:
               
115-535
               

               
Cow position:
               
chr1:8803-8364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 169
               

               
Conread position:
               
115-535
               

               
Cow position:
               
chr1:66355548-66355969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
112, 45
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr1:13614558-13614980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
112, 77
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr1:23633742-23634161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 140
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr1:26895627-26896086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 291
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr1:61564966-61564530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 115
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr1:85029121-85028700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr1:101791932-101792360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 214
               

               
Conread position:
               
115-538
               

               
Cow position:
               
chr1:62964453-62964018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
115-538
               

               
Cow position:
               
chr1:71747849-71748268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
115-538
               

               
Cow position:
               
chr1:86113211-86113674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 192
               

               
Conread position:
               
115-539
               

               
Cow position:
               
chr1:76222534-76222953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
154, 48
               

               
Conread position:
               
115-540
               

               
Cow position:
               
chr1:31347749-31348173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 206
               

               
Conread position:
               
115-540
               

               
Cow position:
               
chr1:76470841-76470396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 150
               

               
Conread position:
               
115-541
               

               
Cow position:
               
chr1:21954042-21954484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
115-541
               

               
Cow position:
               
chr1:97622054-97622464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
115-546
               

               
Cow position:
               
chr1:102266085-102266539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 239
               

               
Conread position:
               
115-547
               

               
Cow position:
               
chr1:92963562-92963126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
115-562
               

               
Cow position:
               
chr1:15547650-15547185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 132
               

               
Conread position:
               
115-562
               

               
Cow position:
               
chr1:30066787-30066353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
115-568
               

               
Cow position:
               
chr1:6941651-6941171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 215
               

               
Conread position:
               
115-591
               

               
Cow position:
               
chr1:196821-197322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
50, 164
               

               
Conread position:
               
115-591
               

               
Cow position:
               
chr1:6959064-6958566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 215
               

               
Conread position:
               
116-306
               

               
Cow position:
               
chr1:52369997-52370180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
116-431
               

               
Cow position:
               
chr1:78838971-78838656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
116-452
               

               
Cow position:
               
chr1:4414045-4414372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
116-452
               

               
Cow position:
               
chr1:51417948-51417612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
116-456
               

               
Cow position:
               
chr1:41115552-41115882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
116-456
               

               
Cow position:
               
chr1:87095027-87095399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
116-466
               

               
Cow position:
               
chr1:9534326-9534001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
116-466
               

               
Cow position:
               
chr1:12464481-12464838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
16, 145
               

               
Conread position:
               
116-525
               

               
Cow position:
               
chr1:25793274-25793690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
114, 44
               

               
Conread position:
               
116-531
               

               
Cow position:
               
chr1:22729239-22728791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
116-534
               

               
Cow position:
               
chr1:6759860-6760278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 94
               

               
Conread position:
               
116-534
               

               
Cow position:
               
chr1:97954299-97954709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
116-543
               

               
Cow position:
               
chr1:69539869-69539430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 140
               

               
Conread position:
               
116-546
               

               
Cow position:
               
chr1:81228151-81228599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 86
               

               
Conread position:
               
117-424
               

               
Cow position:
               
chr1:90595394-90595691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
117-452
               

               
Cow position:
               
chr1:16855518-16855855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
47, 162
               

               
Conread position:
               
117-466
               

               
Cow position:
               
chr1:25735051-25734679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
117-466
               

               
Cow position:
               
chr1:55357106-55357460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 162
               

               
Conread position:
               
117-467
               

               
Cow position:
               
chr1:11729354-11729002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
117-507
               

               
Cow position:
               
chr1:64189665-64189270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 42
               

               
Conread position:
               
117-546
               

               
Cow position:
               
chr1:34160011-34159564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 223
               

               
Conread position:
               
118-424
               

               
Cow position:
               
chr1:24406732-24407023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
112, 39
               

               
Conread position:
               
118-458
               

               
Cow position:
               
chr1:61735266-61735605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
118-463
               

               
Cow position:
               
chr1:53398155-53397816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
118-466
               

               
Cow position:
               
chr1:82337599-82337959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 159
               

               
Conread position:
               
118-522
               

               
Cow position:
               
chr1:102756253-102756666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 148
               

               
Conread position:
               
119-466
               

               
Cow position:
               
chr1:66430455-66430122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 19
               

               
Conread position:
               
122-431
               

               
Cow position:
               
chr1:41047132-41047442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
122-438
               

               
Cow position:
               
chr1:31272272-31272591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 219
               

               
Conread position:
               
124-452
               

               
Cow position:
               
chr1:95057220-95056891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
9, 15
               

               
Conread position:
               
124-456
               

               
Cow position:
               
chr1:4291330-4290990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
125-452
               

               
Cow position:
               
chr1:34686344-34686030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
126-452
               

               
Cow position:
               
chr1:31348261-31348605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
54, 219
               

               
Conread position:
               
126-452
               

               
Cow position:
               
chr1:96276879-96277219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
37, 155
               

               
Conread position:
               
126-463
               

               
Cow position:
               
chr1:98031092-98030743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
127-537
               

               
Cow position:
               
chr1:31413823-31414219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 40
               

               
Conread position:
               
129-433
               

               
Cow position:
               
chr1:26531429-26531722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
130-569
               

               
Cow position:
               
chr1:48581300-48580835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
132-388
               

               
Cow position:
               
chr1:55819206-55818961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
132-452
               

               
Cow position:
               
chr1:69694830-69695167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 147
               

               
Conread position:
               
132-452
               

               
Cow position:
               
chr1:97611496-97611817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
132-521
               

               
Cow position:
               
chr1:24534093-24534489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
132-530
               

               
Cow position:
               
chr1:53521082-53520651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 131
               

               
Conread position:
               
134-443
               

               
Cow position:
               
chr1:90975931-90976242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
140-396
               

               
Cow position:
               
chr1:73756097-73756354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
7, 105
               

               
Conread position:
               
140-521
               

               
Cow position:
               
chr1:47233327-47233721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
85, 119
               

               
Conread position:
               
140-538
               

               
Cow position:
               
chr1:36875181-36874754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 256
               

               
Conread position:
               
141-344
               

               
Cow position:
               
chr1:21823509-21823312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
141-542
               

               
Cow position:
               
chr1:39068804-39069220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 197
               

               
Conread position:
               
142-517
               

               
Cow position:
               
chr1:25281508-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
88, 111
               

               
Conread position:
               
143-462
               

               
Cow position:
               
chr1:57420590-57420900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
252, 26
               

               
Conread position:
               
148-394
               

               
Cow position:
               
chr1:50992077-50991827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 193
               

               
Conread position:
               
148-535
               

               
Cow position:
               
chr1:91039036-91039417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
149-538
               

               
Cow position:
               
chr1:52039776-52039376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
149-546
               

               
Cow position:
               
chr1:36613120-36613543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
150-384
               

               
Cow position:
               
chr1:71796174-71796410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
150-466
               

               
Cow position:
               
chr1:93044156-93043851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
150-467
               

               
Cow position:
               
chr1:32001180-32001496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 102
               

               
Conread position:
               
150-474
               

               
Cow position:
               
chr1:75933408-75933090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
150-510
               

               
Cow position:
               
chr1:89341839-89342228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
152-335
               

               
Cow position:
               
chr1:84768740-84768927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
152-466
               

               
Cow position:
               
chr1:74822594-74822277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
152-536
               

               
Cow position:
               
chr1:44768970-44769370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
153-357
               

               
Cow position:
               
chr1:73936008-73936221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chr1:58037158-58036920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 118
               

               
Conread position:
               
153-441
               

               
Cow position:
               
chr1:5580193-5579906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
153-452
               

               
Cow position:
               
chr1:101837180-101836881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
77, 106
               

               
Conread position:
               
153-467
               

               
Cow position:
               
chr1:67305103-67305419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
154-419
               

               
Cow position:
               
chr1:44746995-44746734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
154-444
               

               
Cow position:
               
chr1:10719345-10719638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
154-514
               

               
Cow position:
               
chr1:40530967-40531348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
157-452
               

               
Cow position:
               
chr1:94261669-94261383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
157-466
               

               
Cow position:
               
chr1:89076500-89076811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
158-451
               

               
Cow position:
               
chr1:93554971-93554680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
158-452
               

               
Cow position:
               
chr1:75347756-75347456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
158-467
               

               
Cow position:
               
chr1:78791177-78791481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
158-543
               

               
Cow position:
               
chr1:93810562-93810175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 311
               

               
Conread position:
               
158-569
               

               
Cow position:
               
chr1:56643473-56643889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
158-571
               

               
Cow position:
               
chr1:49131000-49131419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
160-396
               

               
Cow position:
               
chr1:48769932-48769696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
160-453
               

               
Cow position:
               
chr1:100706256-100705967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
161-339
               

               
Cow position:
               
chr1:43311901-43312084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
161-340
               

               
Cow position:
               
chr1:69481820-69482004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
161-364
               

               
Cow position:
               
chr1:68672472-68672676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
161-387
               

               
Cow position:
               
chr1:95153352-95153120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
161-433
               

               
Cow position:
               
chr1:68676490-68676227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
161-452
               

               
Cow position:
               
chr1:57900594-57900903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 227
               

               
Conread position:
               
161-452
               

               
Cow position:
               
chr1:101632208-101632503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
161-457
               

               
Cow position:
               
chr1:97696874-97696571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
72, 92
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr1:48730703-48731003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr1:92369864-92369554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr1:98360274-98360583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
150, 74
               

               
Conread position:
               
161-478
               

               
Cow position:
               
chr1:91874787-91875098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
306, 90
               

               
Conread position:
               
161-521
               

               
Cow position:
               
chr1:3138043-3137687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
234, 30
               

               
Conread position:
               
161-524
               

               
Cow position:
               
chr1:36932283-36931910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
161-531
               

               
Cow position:
               
chr1:80422402-80422045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
161-542
               

               
Cow position:
               
chr1:90868317-90868701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
161-543
               

               
Cow position:
               
chr1:49839614-49839238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
161-543
               

               
Cow position:
               
chr1:94226425-94226815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 107
               

               
Conread position:
               
161-555
               

               
Cow position:
               
chr1:21836061-21835667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
162-463
               

               
Cow position:
               
chr1:24876389-24876094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
163-466
               

               
Cow position:
               
chr1:49796121-49795830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
164-538
               

               
Cow position:
               
chr1:84241007-84240639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
165-391
               

               
Cow position:
               
chr1:87937021-87936796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
166-323
               

               
Cow position:
               
chr1:71915993-71916155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
166-356
               

               
Cow position:
               
chr1:78067945-78068133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
166-364
               

               
Cow position:
               
chr1:98576172-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
166-409
               

               
Cow position:
               
chr1:78697647-78697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
166-421
               

               
Cow position:
               
chr1:85549952-85550211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
166-446
               

               
Cow position:
               
chr1:98413897-98413608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 174
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:97939082-97938809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
166-462
               

               
Cow position:
               
chr1:86579087-86578778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr1:52995151-52994849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 212
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr1:81613514-81613211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
166-538
               

               
Cow position:
               
chr1:76019571-76019941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
166-571
               

               
Cow position:
               
chr1:52956376-52955975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
167-377
               

               
Cow position:
               
chr1:30417922-30418127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
167-461
               

               
Cow position:
               
chr1:77133875-77133585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
167-467
               

               
Cow position:
               
chr1:65103739-65103458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
167-533
               

               
Cow position:
               
chr1:80988470-80988088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
167-536
               

               
Cow position:
               
chr1:8349200-8349570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
167-543
               

               
Cow position:
               
chr1:98594689-98594302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 86
               

               
Conread position:
               
168-356
               

               
Cow position:
               
chr1:92684571-92684760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
51, 84
               

               
Conread position:
               
168-439
               

               
Cow position:
               
chr1:31390465-31390740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
168-466
               

               
Cow position:
               
chr1:98461407-98461116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
168-467
               

               
Cow position:
               
chr1:7657191-7657488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
169-466
               

               
Cow position:
               
chr1:3166954-3167247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
169-466
               

               
Cow position:
               
chr1:88618716-88618419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
169-538
               

               
Cow position:
               
chr1:53308273-53308653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
169-543
               

               
Cow position:
               
chr1:68253716-68253324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
171-443
               

               
Cow position:
               
chr1:91811898-91811631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
171-467
               

               
Cow position:
               
chr1:60281494-60281191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
171-470
               

               
Cow position:
               
chr1:16961890-16962192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
171-536
               

               
Cow position:
               
chr1:31499745-31499366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
171-545
               

               
Cow position:
               
chr1:44125518-44125907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
172-431
               

               
Cow position:
               
chr1:89786028-89785767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
172-439
               

               
Cow position:
               
chr1:65909629-65909375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
172-463
               

               
Cow position:
               
chr1:26688354-26688649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
22, 27
               

               
Conread position:
               
172-463
               

               
Cow position:
               
chr1:84255886-84255583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
67, 87
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr1:11226129-11226420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
188, 195
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr1:31607770-31608073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 97
               

               
Conread position:
               
172-467
               

               
Cow position:
               
chr1:43872201-43872510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
172-467
               

               
Cow position:
               
chr1:73196110-73196411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 226
               

               
Conread position:
               
172-470
               

               
Cow position:
               
chr1:84283192-84282886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
172-506
               

               
Cow position:
               
chr1:78809995-78809652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
58, 99
               

               
Conread position:
               
172-522
               

               
Cow position:
               
chr1:71253437-71253802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
172-537
               

               
Cow position:
               
chr1:4032751-4032374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
172-546
               

               
Cow position:
               
chr1:81913036-81913422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
172-561
               

               
Cow position:
               
chr1:57297608-57297207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
173-404
               

               
Cow position:
               
chr1:6826180-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 81
               

               
Conread position:
               
174-372
               

               
Cow position:
               
chr1:8347240-8347039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
176-399
               

               
Cow position:
               
chr1:61542804-61543029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
179-413
               

               
Cow position:
               
chr1:63038356-63038116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 134
               

               
Conread position:
               
179-450
               

               
Cow position:
               
chr1:99512154-99512415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
179-452
               

               
Cow position:
               
chr1:26201344-26201056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 233
               

               
Conread position:
               
179-463
               

               
Cow position:
               
chr1:53495573-53495292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr1:19885493-19885210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 89
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr1:95215078-95215360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
179-518
               

               
Cow position:
               
chr1:3962575-3962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 142
               

               
Conread position:
               
179-538
               

               
Cow position:
               
chr1:72285956-72286310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
179-540
               

               
Cow position:
               
chr1:37309407-37309769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 164
               

               
Conread position:
               
180-377
               

               
Cow position:
               
chr1:45670743-45670549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
180-433
               

               
Cow position:
               
chr1:43822510-43822259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
180-437
               

               
Cow position:
               
chr1:30047492-30047740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
180-466
               

               
Cow position:
               
chr1:37706866-37707143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
180-466
               

               
Cow position:
               
chr1:45288759-45289048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 234
               

               
Conread position:
               
180-477
               

               
Cow position:
               
chr1:12978793-12978491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
180-524
               

               
Cow position:
               
chr1:53458806-53458456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
180-537
               

               
Cow position:
               
chr1:82884284-82884647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
180-547
               

               
Cow position:
               
chr1:67821112-67821482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
181-403
               

               
Cow position:
               
chr1:30504611-30504382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
181-451
               

               
Cow position:
               
chr1:77683462-77683194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
49, 128
               

               
Conread position:
               
181-535
               

               
Cow position:
               
chr1:88652746-88652373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
181-535
               

               
Cow position:
               
chr1:89350075-89349715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
49, 260
               

               
Conread position:
               
181-538
               

               
Cow position:
               
chr1:26702097-26702461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
181-545
               

               
Cow position:
               
chr1:39509948-39510310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 78
               

               
Conread position:
               
181-567
               

               
Cow position:
               
chr1:1165705-1165304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
287, 8
               

               
Conread position:
               
182-415
               

               
Cow position:
               
chr1:26615967-26616198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
183-452
               

               
Cow position:
               
chr1:75142105-75141838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
183-537
               

               
Cow position:
               
chr1:33996817-33997174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
184-438
               

               
Cow position:
               
chr1:70312684-70312955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
184-466
               

               
Cow position:
               
chr1:80900226-80899933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
184-546
               

               
Cow position:
               
chr1:81355596-81355971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
185-460
               

               
Cow position:
               
chr1:19568956-19568680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
186-467
               

               
Cow position:
               
chr1:56635203-56634923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
187-452
               

               
Cow position:
               
chr1:26729819-26729563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
187-452
               

               
Cow position:
               
chr1:62291597-62291850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
187-466
               

               
Cow position:
               
chr1:100393059-100393339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
187-524
               

               
Cow position:
               
chr1:81563849-81563484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
188-466
               

               
Cow position:
               
chr1:90422981-90423260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
188-541
               

               
Cow position:
               
chr1:74947016-74947383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
188-562
               

               
Cow position:
               
chr1:2765515-2765131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
189-462
               

               
Cow position:
               
chr1:31234841-31235102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
189-463
               

               
Cow position:
               
chr1:26943410-26943140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
190-522
               

               
Cow position:
               
chr1:51531852-51531526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
190-533
               

               
Cow position:
               
chr1:57263908-57264244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
190-569
               

               
Cow position:
               
chr1:81868628-81869020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
40, 154
               

               
Conread position:
               
191-531
               

               
Cow position:
               
chr1:53425277-53424932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 277
               

               
Conread position:
               
191-533
               

               
Cow position:
               
chr1:73761260-73761613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
192-441
               

               
Cow position:
               
chr1:43703508-43703254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
192-466
               

               
Cow position:
               
chr1:7350647-7350364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 149
               

               
Conread position:
               
192-466
               

               
Cow position:
               
chr1:64250953-64251226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
193-452
               

               
Cow position:
               
chr1:94212325-94212069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
193-466
               

               
Cow position:
               
chr1:69540380-69540124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
194-466
               

               
Cow position:
               
chr1:55146895-55146627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
194-466
               

               
Cow position:
               
chr1:90641125-90640850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr1:68276507-68276232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
197-439
               

               
Cow position:
               
chr1:63314924-63314677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
198-507
               

               
Cow position:
               
chr1:21934084-21934404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
198-528
               

               
Cow position:
               
chr1:89485673-89485338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 235
               

               
Conread position:
               
198-531
               

               
Cow position:
               
chr1:92434094-92433764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
199-521
               

               
Cow position:
               
chr1:5023670-5023986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 162
               

               
Conread position:
               
200-449
               

               
Cow position:
               
chr1:70026254-70026505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 125
               

               
Conread position:
               
201-510
               

               
Cow position:
               
chr1:29916504-29916179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 284
               

               
Conread position:
               
201-542
               

               
Cow position:
               
chr1:29975510-29975864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
202-443
               

               
Cow position:
               
chr1:101946625-101946862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
202-452
               

               
Cow position:
               
chr1:85597027-85596779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
205-374
               

               
Cow position:
               
chr1:72684778-72684610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
205-463
               

               
Cow position:
               
chr1:6788197-6788461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
207-447
               

               
Cow position:
               
chr1:68951709-68951468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
208-470
               

               
Cow position:
               
chr1:7186871-7186609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
210-460
               

               
Cow position:
               
chr1:53423766-53423510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
210-466
               

               
Cow position:
               
chr1:85867670-85867419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
210-536
               

               
Cow position:
               
chr1:61176259-61175922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
210-538
               

               
Cow position:
               
chr1:4374256-4374599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
215-467
               

               
Cow position:
               
chr1:70028656-70028403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chr1:102647199-102647530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
91, 109
               

               
Conread position:
               
220-447
               

               
Cow position:
               
chr1:72103921-72103687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
220-463
               

               
Cow position:
               
chr1:57880713-57880964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
220-466
               

               
Cow position:
               
chr1:42968248-42968492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
220-466
               

               
Cow position:
               
chr1:91816700-91816948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
220-471
               

               
Cow position:
               
chr1:13810718-13810469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
225-413
               

               
Cow position:
               
chr1:8984618-8984810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 117
               

               
Conread position:
               
225-466
               

               
Cow position:
               
chr1:57639451-57639695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 184
               

               
Conread position:
               
225-466
               

               
Cow position:
               
chr1:69127102-69127341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
96, 173
               

               
Conread position:
               
225-466
               

               
Cow position:
               
chr1:82443391-82443631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
226-434
               

               
Cow position:
               
chr1:38692730-38692517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
226-460
               

               
Cow position:
               
chr1:51770155-51769915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
226-462
               

               
Cow position:
               
chr1:1991355-1991595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 51
               

               
Conread position:
               
226-466
               

               
Cow position:
               
chr1:63595991-63596234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
89, 117
               

               
Conread position:
               
226-466
               

               
Cow position:
               
chr1:95654650-95654890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
91, 137
               

               
Conread position:
               
226-524
               

               
Cow position:
               
chr1:55135899-55135587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 155
               

               
Conread position:
               
226-535
               

               
Cow position:
               
chr1:90864230-90864558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
81, 321
               

               
Conread position:
               
226-560
               

               
Cow position:
               
chr1:79278384-79278728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
228-443
               

               
Cow position:
               
chr1:182865-182654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 68
               

               
Conread position:
               
228-446
               

               
Cow position:
               
chr1:28567374-28567588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
229-452
               

               
Cow position:
               
chr1:9470338-9470562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
88, 83
               

               
Conread position:
               
229-458
               

               
Cow position:
               
chr1:60907437-60907200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
229-460
               

               
Cow position:
               
chr1:98311130-98310893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
229-466
               

               
Cow position:
               
chr1:24235459-24235695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 15
               

               
Conread position:
               
229-466
               

               
Cow position:
               
chr1:24445568-24445803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
230-407
               

               
Cow position:
               
chr1:15169276-15169451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
230-463
               

               
Cow position:
               
chr1:10655540-10655306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
231-448
               

               
Cow position:
               
chr1:93228583-93228365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
231-533
               

               
Cow position:
               
chr1:57635517-57635209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
234-466
               

               
Cow position:
               
chr1:64421385-64421156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
234-501
               

               
Cow position:
               
chr1:100770697-100770965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
236-460
               

               
Cow position:
               
chr1:68996231-68996003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
139, 30
               

               
Conread position:
               
236-467
               

               
Cow position:
               
chr1:20422154-20422381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
236-571
               

               
Cow position:
               
chr1:45535760-45535407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 333
               

               
Conread position:
               
239-466
               

               
Cow position:
               
chr1:80631749-80631524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
246-471
               

               
Cow position:
               
chr1:100512654-100512415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 211
               

               
Conread position:
               
250-466
               

               
Cow position:
               
chr1:47009072-47008856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
251-467
               

               
Cow position:
               
chr1:14528161-14528375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
253-466
               

               
Cow position:
               
chr1:8532177-8532390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
253-524
               

               
Cow position:
               
chr1:30034570-30034297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 107
               

               
Conread position:
               
254-466
               

               
Cow position:
               
chr1:22448545-22448761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 188
               

               
Conread position:
               
254-466
               

               
Cow position:
               
chr1:55163955-55163748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 108
               

               
Conread position:
               
256-448
               

               
Cow position:
               
chr1:51684840-51684643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 178
               

               
Conread position:
               
256-466
               

               
Cow position:
               
chr1:98372666-98372454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
256-506
               

               
Cow position:
               
chr1:43447795-43448055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 6
               

               
Conread position:
               
256-521
               

               
Cow position:
               
chr1:3244883-3244604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 91
               

               
Conread position:
               
256-565
               

               
Cow position:
               
chr1:99095397-99095076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
257-467
               

               
Cow position:
               
chr1:6961940-6961727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 205
               

               
Conread position:
               
258-463
               

               
Cow position:
               
chr1:81471164-81470957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
258-531
               

               
Cow position:
               
chr1:3034968-3035250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
195, 33
               

               
Conread position:
               
258-534
               

               
Cow position:
               
chr1:61723988-61724284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 45
               

               
Conread position:
               
262-458
               

               
Cow position:
               
chr1:91834253-91834057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
265-524
               

               
Cow position:
               
chr1:1403456-1403719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 115
               

               
Conread position:
               
266-466
               

               
Cow position:
               
chr1:15311886-15311694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
267-538
               

               
Cow position:
               
chr1:5409593-5409875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
133, 162
               

               
Conread position:
               
267-544
               

               
Cow position:
               
chr1:84116416-84116133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
268-460
               

               
Cow position:
               
chr1:77440417-77440223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
133, 26
               

               
Conread position:
               
268-462
               

               
Cow position:
               
chr1:44165107-44164908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
268-463
               

               
Cow position:
               
chr1:47883796-47884004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
268-466
               

               
Cow position:
               
chr1:83593787-83593982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
124, 45
               

               
Conread position:
               
268-470
               

               
Cow position:
               
chr1:73522126-73522322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
268-533
               

               
Cow position:
               
chr1:22255391-22255133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
171, 65
               

               
Conread position:
               
268-538
               

               
Cow position:
               
chr1:666387-666099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 278
               

               
Conread position:
               
268-583
               

               
Cow position:
               
chr1:38544443-38544755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 88
               

               
Conread position:
               
269-452
               

               
Cow position:
               
chr1:51818962-51818777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 172
               

               
Conread position:
               
269-452
               

               
Cow position:
               
chr1:99039335-99039517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 89
               

               
Conread position:
               
269-463
               

               
Cow position:
               
chr1:11770272-11770465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 68
               

               
Conread position:
               
269-466
               

               
Cow position:
               
chr1:56674106-56674304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
269-533
               

               
Cow position:
               
chr1:63905454-63905732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 50
               

               
Conread position:
               
269-536
               

               
Cow position:
               
chr1:44155269-44155001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 75
               

               
Conread position:
               
269-571
               

               
Cow position:
               
chr1:24655978-24655665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
270-438
               

               
Cow position:
               
chr1:100812556-100812720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
270-443
               

               
Cow position:
               
chr1:44110780-44110597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 167
               

               
Conread position:
               
270-443
               

               
Cow position:
               
chr1:85826366-85826191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
270-522
               

               
Cow position:
               
chr1:64962648-64962903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
270-538
               

               
Cow position:
               
chr1:71946351-71946631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 138
               

               
Conread position:
               
270-562
               

               
Cow position:
               
chr1:78794717-78795020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
271-524
               

               
Cow position:
               
chr1:3776601-3776863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 32
               

               
Conread position:
               
271-545
               

               
Cow position:
               
chr1:3340956-3340668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
273-591
               

               
Cow position:
               
chr1:71818445-71818780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
195, 40
               

               
Conread position:
               
274-565
               

               
Cow position:
               
chr1:34000926-34000618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 272
               

               
Conread position:
               
275-444
               

               
Cow position:
               
chr1:45673730-45673554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 166
               

               
Conread position:
               
276-452
               

               
Cow position:
               
chr1:81638418-81638238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
276-538
               

               
Cow position:
               
chr1:11873348-11873616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
277-466
               

               
Cow position:
               
chr1:32013966-32013782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
118, 36
               

               
Conread position:
               
277-520
               

               
Cow position:
               
chr1:75967443-75967191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
277-544
               

               
Cow position:
               
chr1:56658045-56657773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
280-447
               

               
Cow position:
               
chr1:89437929-89438095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
280-535
               

               
Cow position:
               
chr1:19998033-19998295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
168, 99
               

               
Conread position:
               
282-520
               

               
Cow position:
               
chr1:4294064-4293816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
283-461
               

               
Cow position:
               
chr1:41004354-41004536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
283-515
               

               
Cow position:
               
chr1:94404220-94403976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
283-547
               

               
Cow position:
               
chr1:12595895-12596171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 257
               

               
Conread position:
               
291-466
               

               
Cow position:
               
chr1:95327158-95327327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
292-438
               

               
Cow position:
               
chr1:98396963-98397109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
292-557
               

               
Cow position:
               
chr1:96478696-96478415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 252
               

               
Conread position:
               
293-467
               

               
Cow position:
               
chr1:91142160-91142332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
293-493
               

               
Cow position:
               
chr1:32596453-32596247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 192
               

               
Conread position:
               
294-467
               

               
Cow position:
               
chr1:64938949-64939118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
298-530
               

               
Cow position:
               
chr1:96184025-96184263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
299-536
               

               
Cow position:
               
chr1:33811916-33811673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
155, 37
               

               
Conread position:
               
304-463
               

               
Cow position:
               
chr1:101547050-101547214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
304-474
               

               
Cow position:
               
chr1:20288103-20287931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
308-445
               

               
Cow position:
               
chr1:73536719-73536584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 116
               

               
Conread position:
               
308-466
               

               
Cow position:
               
chr1:21342553-21342719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
309-462
               

               
Cow position:
               
chr1:20799863-20799703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
309-466
               

               
Cow position:
               
chr1:51654390-51654236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
92, 137
               

               
Conread position:
               
309-466
               

               
Cow position:
               
chr1:102113124-102113283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
309-538
               

               
Cow position:
               
chr1:77099574-77099801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
131, 10
               

               
Conread position:
               
309-546
               

               
Cow position:
               
chr1:5872993-5873241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
310-412
               

               
Cow position:
               
chr1:59020255-59020152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
313-444
               

               
Cow position:
               
chr1:52449632-52449764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
313-519
               

               
Cow position:
               
chr1:51836545-51836327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
313-534
               

               
Cow position:
               
chr1:85361835-85361594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 85
               

               
Conread position:
               
313-566
               

               
Cow position:
               
chr1:77658042-77657776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
314-439
               

               
Cow position:
               
chr1:72422599-72422724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
314-545
               

               
Cow position:
               
chr1:51628525-51628772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
154, 75
               

               
Conread position:
               
314-554
               

               
Cow position:
               
chr1:29901001-29901235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
314-555
               

               
Cow position:
               
chr1:22689045-22688825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
314-565
               

               
Cow position:
               
chr1:52506581-52506834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
319-466
               

               
Cow position:
               
chr1:92370390-92370536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr1:98708409-98708186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
124, 162
               

               
Conread position:
               
320-462
               

               
Cow position:
               
chr1:49753896-49753760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
320-463
               

               
Cow position:
               
chr1:11832800-11832939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
320-463
               

               
Cow position:
               
chr1:51435626-51435768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
322-524
               

               
Cow position:
               
chr1:89395567-89395342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
322-571
               

               
Cow position:
               
chr1:97806754-97806499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
129, 212
               

               
Conread position:
               
323-452
               

               
Cow position:
               
chr1:31960190-31960060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
323-557
               

               
Cow position:
               
chr1:14379570-14379809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
120, 105
               

               
Conread position:
               
324-460
               

               
Cow position:
               
chr1:70236324-70236461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
324-467
               

               
Cow position:
               
chr1:16972878-16973014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
325-527
               

               
Cow position:
               
chr1:89729011-89729209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
190, 99
               

               
Conread position:
               
325-538
               

               
Cow position:
               
chr1:79591070-79590839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 221
               

               
Conread position:
               
327-438
               

               
Cow position:
               
chr1:7450091-7449979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
328-466
               

               
Cow position:
               
chr1:31765427-31765571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
328-536
               

               
Cow position:
               
chr1:99136471-99136691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 179
               

               
Conread position:
               
328-543
               

               
Cow position:
               
chr1:82861741-82861506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
72, 219
               

               
Conread position:
               
330-466
               

               
Cow position:
               
chr1:44136508-44136636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
330-545
               

               
Cow position:
               
chr1:19545141-19545365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
110, 184
               

               
Conread position:
               
331-463
               

               
Cow position:
               
chr1:30504428-30504299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
346-538
               

               
Cow position:
               
chr1:55686275-55686480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
122, 195
               

               
Conread position:
               
363-466
               

               
Cow position:
               
chr1:99792740-99792637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.