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Cow genome map

           
Conread name:
           
rpldo0136_h2.y1
        

               
Conread position:
               
26-467
               

               
Cow position:
               
chr5:23529019-23529433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
41-466
               

               
Cow position:
               
chr5:7044437-7044866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
51-537
               

               
Cow position:
               
chr5:33265207-33265672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
64-466
               

               
Cow position:
               
chr5:26262438-26262831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
65-456
               

               
Cow position:
               
chr5:17062826-17063239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
66-524
               

               
Cow position:
               
chr5:20128300-20127824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
67-524
               

               
Cow position:
               
chr5:17999237-17999726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
18, 143
               

               
Conread position:
               
67-554
               

               
Cow position:
               
chr5:40109740-40109239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 175
               

               
Conread position:
               
68-377
               

               
Cow position:
               
chr5:19752545-19752235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
68-536
               

               
Cow position:
               
chr5:28224686-28224213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
71-371
               

               
Cow position:
               
chr5:59626731-59627038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
71-442
               

               
Cow position:
               
chr5:29060689-29061066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
71-460
               

               
Cow position:
               
chr5:1687877-1688262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 10
               

               
Conread position:
               
71-462
               

               
Cow position:
               
chr5:6572982-6572600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
71-462
               

               
Cow position:
               
chr5:37646321-37645922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
71-480
               

               
Cow position:
               
chr5:57767737-57768151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
71-538
               

               
Cow position:
               
chr5:50723299-50722808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
71-539
               

               
Cow position:
               
chr5:35685176-35684689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
72-435
               

               
Cow position:
               
chr5:49474304-49474670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
72-463
               

               
Cow position:
               
chr5:66972670-66972271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
72-534
               

               
Cow position:
               
chr5:30303133-30302656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 184
               

               
Conread position:
               
73-357
               

               
Cow position:
               
chr5:15471170-15470882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
73-390
               

               
Cow position:
               
chr5:33834290-33833961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
74-339
               

               
Cow position:
               
chr5:50101128-50101410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
74-538
               

               
Cow position:
               
chr5:9893887-9894369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
74-541
               

               
Cow position:
               
chr5:32975315-32975798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
75-466
               

               
Cow position:
               
chr5:45845453-45845851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
75-466
               

               
Cow position:
               
chr5:56028297-56028686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
76-339
               

               
Cow position:
               
chr5:30247279-30247552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
76-467
               

               
Cow position:
               
chr5:44028075-44028461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
76-484
               

               
Cow position:
               
chr5:29097599-29097183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
76-524
               

               
Cow position:
               
chr5:44847789-44848246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
76-535
               

               
Cow position:
               
chr5:42845350-42845839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
77-462
               

               
Cow position:
               
chr5:35208511-35208110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
77-466
               

               
Cow position:
               
chr5:56071098-56070697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
77-500
               

               
Cow position:
               
chr5:3582790-3582378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
77-521
               

               
Cow position:
               
chr5:71454387-71454823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
77-543
               

               
Cow position:
               
chr5:24349334-24348863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
78-443
               

               
Cow position:
               
chr5:72952071-72951703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
78-466
               

               
Cow position:
               
chr5:59115627-59115225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
79-310
               

               
Cow position:
               
chr5:56613320-56613565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
79-377
               

               
Cow position:
               
chr5:57755800-57756101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
79-411
               

               
Cow position:
               
chr5:12557054-12557396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
79-455
               

               
Cow position:
               
chr5:35826839-35826454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
79-456
               

               
Cow position:
               
chr5:55177113-55176741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
79-463
               

               
Cow position:
               
chr5:11426989-11427394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 44
               

               
Conread position:
               
79-466
               

               
Cow position:
               
chr5:41452449-41452822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
79-466
               

               
Cow position:
               
chr5:60209900-60210295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 184
               

               
Conread position:
               
79-471
               

               
Cow position:
               
chr5:14550337-14550747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 190
               

               
Conread position:
               
79-474
               

               
Cow position:
               
chr5:46512535-46512931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
79-517
               

               
Cow position:
               
chr5:65753100-65752633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
79-524
               

               
Cow position:
               
chr5:41165327-41164858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 344
               

               
Conread position:
               
79-531
               

               
Cow position:
               
chr5:66339306-66338847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
79-534
               

               
Cow position:
               
chr5:44796503-44796956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
79-537
               

               
Cow position:
               
chr5:56467914-56467461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
79-538
               

               
Cow position:
               
chr5:58519172-58519641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
80-441
               

               
Cow position:
               
chr5:18289363-18288995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 183
               

               
Conread position:
               
80-449
               

               
Cow position:
               
chr5:19335530-19335932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 193
               

               
Conread position:
               
80-452
               

               
Cow position:
               
chr5:7057165-7057545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
80-591
               

               
Cow position:
               
chr5:1247495-1246981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
66, 47
               

               
Conread position:
               
81-447
               

               
Cow position:
               
chr5:39241995-39242334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
81-452
               

               
Cow position:
               
chr5:12322570-12322946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
81-455
               

               
Cow position:
               
chr5:49920167-49919782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 237
               

               
Conread position:
               
81-460
               

               
Cow position:
               
chr5:24995979-24996376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
81-460
               

               
Cow position:
               
chr5:44673947-44673534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 236
               

               
Conread position:
               
81-460
               

               
Cow position:
               
chr5:52668280-52667877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
81-463
               

               
Cow position:
               
chr5:15364112-15363738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:5257056-5257452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:16025252-16025616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 37
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:16893536-16893931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 306
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:21829095-21828709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:22242533-22242941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:34562240-34561853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:51053406-51053803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr5:65941019-65941409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 193
               

               
Conread position:
               
81-467
               

               
Cow position:
               
chr5:21617686-21617299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
81-508
               

               
Cow position:
               
chr5:35969771-35969328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 193
               

               
Conread position:
               
81-527
               

               
Cow position:
               
chr5:42064450-42063970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 371
               

               
Conread position:
               
81-531
               

               
Cow position:
               
chr5:26377443-26377904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
81-533
               

               
Cow position:
               
chr5:72903000-72903463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
81-536
               

               
Cow position:
               
chr5:34441555-34442035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
81-536
               

               
Cow position:
               
chr5:66257865-66257402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
81-542
               

               
Cow position:
               
chr5:27102582-27103035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
149, 32
               

               
Conread position:
               
82-315
               

               
Cow position:
               
chr5:6520248-6520005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
82-349
               

               
Cow position:
               
chr5:40237431-40237171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
82-365
               

               
Cow position:
               
chr5:61456077-61455787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
82-388
               

               
Cow position:
               
chr5:46022828-46023138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
82-410
               

               
Cow position:
               
chr5:36038763-36039107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
82-420
               

               
Cow position:
               
chr5:13717330-13717684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
82-452
               

               
Cow position:
               
chr5:3242254-3242619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
82-452
               

               
Cow position:
               
chr5:69461571-69461189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
82-458
               

               
Cow position:
               
chr5:66582210-66581812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
82-460
               

               
Cow position:
               
chr5:63647238-63647626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr5:2309328-2309719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 57
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr5:42050774-42050392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
82-538
               

               
Cow position:
               
chr5:29828278-29827811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
82-543
               

               
Cow position:
               
chr5:41604847-41604362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
83-306
               

               
Cow position:
               
chr5:59627332-59627103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
83-422
               

               
Cow position:
               
chr5:12902159-12901800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
83-441
               

               
Cow position:
               
chr5:991703-991332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
83-443
               

               
Cow position:
               
chr5:73167785-73168134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
83-460
               

               
Cow position:
               
chr5:62107244-62107644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
83-462
               

               
Cow position:
               
chr5:52164944-52165334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 118
               

               
Conread position:
               
83-502
               

               
Cow position:
               
chr5:4280685-4280255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 307
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr5:19278474-19278919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
83-535
               

               
Cow position:
               
chr5:11667944-11668419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 358
               

               
Conread position:
               
84-341
               

               
Cow position:
               
chr5:26548905-26549176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
84-399
               

               
Cow position:
               
chr5:50576005-50575693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
84-466
               

               
Cow position:
               
chr5:30276924-30276538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
84-466
               

               
Cow position:
               
chr5:47602048-47601661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
84-541
               

               
Cow position:
               
chr5:36855433-36854966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
84-543
               

               
Cow position:
               
chr5:43858179-43858676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 297
               

               
Conread position:
               
84-545
               

               
Cow position:
               
chr5:20779161-20779632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
84-568
               

               
Cow position:
               
chr5:53835949-53835443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
34, 327
               

               
Conread position:
               
85-366
               

               
Cow position:
               
chr5:63627299-63627584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
85-467
               

               
Cow position:
               
chr5:37069099-37068735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
86-461
               

               
Cow position:
               
chr5:49685041-49685430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
86-463
               

               
Cow position:
               
chr5:71495039-71494665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
144, 33
               

               
Conread position:
               
86-534
               

               
Cow position:
               
chr5:47316737-47317210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
86-571
               

               
Cow position:
               
chr5:25495125-25495614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
35, 174
               

               
Conread position:
               
87-439
               

               
Cow position:
               
chr5:5856095-5855743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
87-452
               

               
Cow position:
               
chr5:11229446-11229814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
87-463
               

               
Cow position:
               
chr5:28324596-28324196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
88-372
               

               
Cow position:
               
chr5:48867237-48867528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
92-537
               

               
Cow position:
               
chr5:26990607-26990150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
93-531
               

               
Cow position:
               
chr5:50600265-50599829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
94-503
               

               
Cow position:
               
chr5:71768279-71768670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
97-309
               

               
Cow position:
               
chr5:44163147-44163369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
97-311
               

               
Cow position:
               
chr5:69383477-69383253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
97-433
               

               
Cow position:
               
chr5:56680457-56680121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 5
               

               
Conread position:
               
97-466
               

               
Cow position:
               
chr5:72006656-72007008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
97-546
               

               
Cow position:
               
chr5:27419523-27419970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr5:35784782-35785079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
99-419
               

               
Cow position:
               
chr5:42670649-42670968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
99-460
               

               
Cow position:
               
chr5:48758145-48757793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
99-543
               

               
Cow position:
               
chr5:57934896-57935361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
100-466
               

               
Cow position:
               
chr5:12673258-12673620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
100-466
               

               
Cow position:
               
chr5:43922948-43923305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
102-309
               

               
Cow position:
               
chr5:4267881-4267670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
102-466
               

               
Cow position:
               
chr5:14314737-14314366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
102-466
               

               
Cow position:
               
chr5:34625169-34624813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
102-482
               

               
Cow position:
               
chr5:19294298-19294661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
102-531
               

               
Cow position:
               
chr5:46610896-46611327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
102-533
               

               
Cow position:
               
chr5:27615714-27615275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
102-535
               

               
Cow position:
               
chr5:30487448-30487009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
102-536
               

               
Cow position:
               
chr5:28945859-28946301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
102-543
               

               
Cow position:
               
chr5:26594899-26595351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
121, 60
               

               
Conread position:
               
102-544
               

               
Cow position:
               
chr5:62172619-62172167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
102-552
               

               
Cow position:
               
chr5:53842512-53842033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 316
               

               
Conread position:
               
102-562
               

               
Cow position:
               
chr5:39447304-39447800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
14, 172
               

               
Conread position:
               
102-583
               

               
Cow position:
               
chr5:25035033-25035519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 167
               

               
Conread position:
               
103-217
               

               
Cow position:
               
chr5:70545084-70545200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
103-427
               

               
Cow position:
               
chr5:16179303-16179645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
103-467
               

               
Cow position:
               
chr5:67932246-67932621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 168
               

               
Conread position:
               
103-473
               

               
Cow position:
               
chr5:55956130-55955742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
103-536
               

               
Cow position:
               
chr5:3492405-3491959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
106-441
               

               
Cow position:
               
chr5:57419581-57419925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
67, 240
               

               
Conread position:
               
107-278
               

               
Cow position:
               
chr5:51125804-51125978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
107-281
               

               
Cow position:
               
chr5:16668909-16668725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
107-295
               

               
Cow position:
               
chr5:47743837-47743642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
108-447
               

               
Cow position:
               
chr5:11539837-11540188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 227
               

               
Conread position:
               
108-504
               

               
Cow position:
               
chr5:18899171-18898773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
111-438
               

               
Cow position:
               
chr5:41713498-41713170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
113-420
               

               
Cow position:
               
chr5:4927371-4927680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
117, 46
               

               
Conread position:
               
113-538
               

               
Cow position:
               
chr5:12351606-12352024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
114-452
               

               
Cow position:
               
chr5:35246901-35247256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
114-456
               

               
Cow position:
               
chr5:57328004-57327647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 209
               

               
Conread position:
               
114-460
               

               
Cow position:
               
chr5:47756979-47756619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
115-247
               

               
Cow position:
               
chr5:12478767-12478896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
115-282
               

               
Cow position:
               
chr5:44734521-44734698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
115-289
               

               
Cow position:
               
chr5:38040362-38040544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
115-323
               

               
Cow position:
               
chr5:42753102-42752893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
61, 169
               

               
Conread position:
               
115-325
               

               
Cow position:
               
chr5:30562134-30561915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
115-327
               

               
Cow position:
               
chr5:25598035-25597816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
60, 161
               

               
Conread position:
               
115-364
               

               
Cow position:
               
chr5:63832122-63831870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
115, 54
               

               
Conread position:
               
115-377
               

               
Cow position:
               
chr5:63234617-63234896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 153
               

               
Conread position:
               
115-390
               

               
Cow position:
               
chr5:38717501-38717239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
115-394
               

               
Cow position:
               
chr5:57526721-57527005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
74, 186
               

               
Conread position:
               
115-396
               

               
Cow position:
               
chr5:28035930-28035650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
115-419
               

               
Cow position:
               
chr5:60016370-60016055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 145
               

               
Conread position:
               
115-420
               

               
Cow position:
               
chr5:47680830-47681115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
115-424
               

               
Cow position:
               
chr5:33560532-33560851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr5:30628947-30629303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
68, 251
               

               
Conread position:
               
115-461
               

               
Cow position:
               
chr5:35459090-35459445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
50, 87
               

               
Conread position:
               
115-461
               

               
Cow position:
               
chr5:39875311-39874972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr5:6528870-6528525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr5:7723850-7723515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr5:34050314-34049954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 332
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr5:48143584-48143946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr5:55756207-55756595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr5:62869857-62870192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr5:16214887-16214531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 285
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr5:39695838-39695493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
111, 45
               

               
Conread position:
               
115-468
               

               
Cow position:
               
chr5:47696254-47696600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 136
               

               
Conread position:
               
115-470
               

               
Cow position:
               
chr5:63963986-63964332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
156, 54
               

               
Conread position:
               
115-474
               

               
Cow position:
               
chr5:30845312-30844946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
115-520
               

               
Cow position:
               
chr5:40387695-40388092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
154, 47
               

               
Conread position:
               
115-521
               

               
Cow position:
               
chr5:14903860-14904294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
115-521
               

               
Cow position:
               
chr5:27155208-27154795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
115-524
               

               
Cow position:
               
chr5:3772048-3771616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
115-530
               

               
Cow position:
               
chr5:74643478-74643897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr5:29352926-29353371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
115-536
               

               
Cow position:
               
chr5:61600613-61600170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
115-538
               

               
Cow position:
               
chr5:64523658-64524124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
115-539
               

               
Cow position:
               
chr5:50901105-50900663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
115-541
               

               
Cow position:
               
chr5:45225614-45226072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
115-543
               

               
Cow position:
               
chr5:17028282-17027850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
115-543
               

               
Cow position:
               
chr5:26097496-26097049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 178
               

               
Conread position:
               
115-543
               

               
Cow position:
               
chr5:35145541-35145102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
115-562
               

               
Cow position:
               
chr5:29903337-29903787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
116-320
               

               
Cow position:
               
chr5:23527444-23527642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
116-352
               

               
Cow position:
               
chr5:56153804-56153569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
116-441
               

               
Cow position:
               
chr5:39258704-39258389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
116-466
               

               
Cow position:
               
chr5:50942957-50943309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 141
               

               
Conread position:
               
116-471
               

               
Cow position:
               
chr5:62639090-62638745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
116-521
               

               
Cow position:
               
chr5:16937829-16938235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 111
               

               
Conread position:
               
116-547
               

               
Cow position:
               
chr5:66815385-66815831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
117-566
               

               
Cow position:
               
chr5:1343672-1344127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
117-592
               

               
Cow position:
               
chr5:40927810-40928264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
204, 41
               

               
Conread position:
               
118-378
               

               
Cow position:
               
chr5:11769475-11769196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 155
               

               
Conread position:
               
119-350
               

               
Cow position:
               
chr5:55795768-55796008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
46, 217
               

               
Conread position:
               
119-467
               

               
Cow position:
               
chr5:26562359-26561997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
119-525
               

               
Cow position:
               
chr5:36868939-36868514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
46, 243
               

               
Conread position:
               
120-451
               

               
Cow position:
               
chr5:45397768-45397434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
121-438
               

               
Cow position:
               
chr5:64140738-64140399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
121-452
               

               
Cow position:
               
chr5:22643044-22643363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
121-462
               

               
Cow position:
               
chr5:6286249-6286578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
122-439
               

               
Cow position:
               
chr5:18554072-18553768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
173, 40
               

               
Conread position:
               
123-468
               

               
Cow position:
               
chr5:35228944-35229291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 75
               

               
Conread position:
               
124-538
               

               
Cow position:
               
chr5:33662031-33661612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
124-569
               

               
Cow position:
               
chr5:54350174-54350635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 333
               

               
Conread position:
               
126-553
               

               
Cow position:
               
chr5:8024015-8024445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
127-536
               

               
Cow position:
               
chr5:35763441-35763048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
129-518
               

               
Cow position:
               
chr5:27411228-27411614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
130-536
               

               
Cow position:
               
chr5:4347524-4347953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
132-466
               

               
Cow position:
               
chr5:72564938-72564606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
134-377
               

               
Cow position:
               
chr5:30805345-30805098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
134-571
               

               
Cow position:
               
chr5:55966707-55967159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
136-524
               

               
Cow position:
               
chr5:12710064-12709656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
137-524
               

               
Cow position:
               
chr5:6683193-6683578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
140-497
               

               
Cow position:
               
chr5:23168656-23169022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
141-417
               

               
Cow position:
               
chr5:60183980-60183691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
148-466
               

               
Cow position:
               
chr5:62985675-62985361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
152-537
               

               
Cow position:
               
chr5:44752148-44752551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 201
               

               
Conread position:
               
153-437
               

               
Cow position:
               
chr5:44726177-44726456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
153-445
               

               
Cow position:
               
chr5:14473247-14473551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
153-461
               

               
Cow position:
               
chr5:30949755-30950070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 197
               

               
Conread position:
               
155-411
               

               
Cow position:
               
chr5:54375346-54375611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
156-536
               

               
Cow position:
               
chr5:65932788-65933170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 96
               

               
Conread position:
               
156-545
               

               
Cow position:
               
chr5:37378009-37377627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
157-449
               

               
Cow position:
               
chr5:73556044-73556328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
157-452
               

               
Cow position:
               
chr5:74858731-74858428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
159-452
               

               
Cow position:
               
chr5:56518069-56518355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
160-536
               

               
Cow position:
               
chr5:50821932-50821546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
161-335
               

               
Cow position:
               
chr5:52108120-52108295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
161-338
               

               
Cow position:
               
chr5:9369121-9369298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 146
               

               
Conread position:
               
161-406
               

               
Cow position:
               
chr5:55019443-55019194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 186
               

               
Conread position:
               
161-413
               

               
Cow position:
               
chr5:41294231-41293974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
161-417
               

               
Cow position:
               
chr5:23678553-23678814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
161-419
               

               
Cow position:
               
chr5:7698150-7697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 154
               

               
Conread position:
               
161-439
               

               
Cow position:
               
chr5:45273352-45273633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
161-463
               

               
Cow position:
               
chr5:46509716-46510019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr5:54060426-54060118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 107
               

               
Conread position:
               
161-530
               

               
Cow position:
               
chr5:44053904-44054274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
11, 128
               

               
Conread position:
               
161-531
               

               
Cow position:
               
chr5:4031836-4032226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 97
               

               
Conread position:
               
161-538
               

               
Cow position:
               
chr5:4710002-4710386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 91
               

               
Conread position:
               
161-562
               

               
Cow position:
               
chr5:26476866-26477261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 123
               

               
Conread position:
               
162-545
               

               
Cow position:
               
chr5:27306454-27306067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
165-421
               

               
Cow position:
               
chr5:38076337-38076597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
71, 103
               

               
Conread position:
               
165-546
               

               
Cow position:
               
chr5:20783767-20783377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
166-345
               

               
Cow position:
               
chr5:49501679-49501863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
166-391
               

               
Cow position:
               
chr5:1165309-1165090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
166-424
               

               
Cow position:
               
chr5:37808518-37808793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 186
               

               
Conread position:
               
166-439
               

               
Cow position:
               
chr5:54767764-54768042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
64, 134
               

               
Conread position:
               
166-462
               

               
Cow position:
               
chr5:6045441-6045136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr5:458633-458326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 293
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr5:4221122-4220825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr5:47323607-47323295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
166-519
               

               
Cow position:
               
chr5:54086683-54086315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
166-521
               

               
Cow position:
               
chr5:34301063-34300698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
166-524
               

               
Cow position:
               
chr5:50533243-50533614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
64, 75
               

               
Conread position:
               
166-531
               

               
Cow position:
               
chr5:740802-741186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
166-536
               

               
Cow position:
               
chr5:46322658-46323054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 86
               

               
Conread position:
               
166-540
               

               
Cow position:
               
chr5:58856247-58855858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 79
               

               
Conread position:
               
166-547
               

               
Cow position:
               
chr5:54311481-54311078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
166-570
               

               
Cow position:
               
chr5:37646399-37646827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
167-416
               

               
Cow position:
               
chr5:35126199-35125945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
167-421
               

               
Cow position:
               
chr5:3639353-3639606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
145, 59
               

               
Conread position:
               
167-452
               

               
Cow position:
               
chr5:64758623-64758912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 256
               

               
Conread position:
               
167-462
               

               
Cow position:
               
chr5:29771672-29771363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 123
               

               
Conread position:
               
167-466
               

               
Cow position:
               
chr5:6503737-6504035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 205
               

               
Conread position:
               
167-466
               

               
Cow position:
               
chr5:9089884-9090179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 51
               

               
Conread position:
               
167-536
               

               
Cow position:
               
chr5:60715224-60715597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
168-467
               

               
Cow position:
               
chr5:14629663-14629972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
168-519
               

               
Cow position:
               
chr5:25899731-25900089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
169-434
               

               
Cow position:
               
chr5:60747139-60747403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
169-536
               

               
Cow position:
               
chr5:37757697-37758046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
170-466
               

               
Cow position:
               
chr5:61487971-61488268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
171-435
               

               
Cow position:
               
chr5:58490869-58490589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 202
               

               
Conread position:
               
171-460
               

               
Cow position:
               
chr5:359799-360096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 283
               

               
Conread position:
               
171-463
               

               
Cow position:
               
chr5:65776245-65776538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
171-524
               

               
Cow position:
               
chr5:18574312-18573940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
171-544
               

               
Cow position:
               
chr5:67212499-67212130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
59, 19
               

               
Conread position:
               
171-547
               

               
Cow position:
               
chr5:15479264-15478863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr5:5110930-5111232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
172-483
               

               
Cow position:
               
chr5:6895988-6896296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 94
               

               
Conread position:
               
172-531
               

               
Cow position:
               
chr5:63987307-63987684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
172-534
               

               
Cow position:
               
chr5:16206016-16206384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
172-538
               

               
Cow position:
               
chr5:34528685-34528319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
172-539
               

               
Cow position:
               
chr5:43992463-43992082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 259
               

               
Conread position:
               
172-545
               

               
Cow position:
               
chr5:44993910-44994290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
172-545
               

               
Cow position:
               
chr5:57737238-57736861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
58, 137
               

               
Conread position:
               
173-517
               

               
Cow position:
               
chr5:3204964-3204612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
140, 19
               

               
Conread position:
               
179-374
               

               
Cow position:
               
chr5:57994746-57994932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr5:62142808-62142515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 199
               

               
Conread position:
               
179-519
               

               
Cow position:
               
chr5:19813087-19813437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 164
               

               
Conread position:
               
179-532
               

               
Cow position:
               
chr5:21039851-21040212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 89
               

               
Conread position:
               
179-540
               

               
Cow position:
               
chr5:52000350-51999973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
179-546
               

               
Cow position:
               
chr5:34463448-34463838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
180-368
               

               
Cow position:
               
chr5:45420006-45420195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 73
               

               
Conread position:
               
180-376
               

               
Cow position:
               
chr5:1461220-1461018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
180-419
               

               
Cow position:
               
chr5:58446938-58446691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
180-424
               

               
Cow position:
               
chr5:53710558-53710811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
180-453
               

               
Cow position:
               
chr5:45574751-45574474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 79
               

               
Conread position:
               
180-520
               

               
Cow position:
               
chr5:59325711-59326054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
180-521
               

               
Cow position:
               
chr5:27171862-27172188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
46, 69
               

               
Conread position:
               
180-530
               

               
Cow position:
               
chr5:65588830-65588476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
50, 70
               

               
Conread position:
               
181-437
               

               
Cow position:
               
chr5:31561663-31561402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
181-452
               

               
Cow position:
               
chr5:21964399-21964141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
132, 50
               

               
Conread position:
               
181-537
               

               
Cow position:
               
chr5:15598108-15598477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
284, 38
               

               
Conread position:
               
182-358
               

               
Cow position:
               
chr5:22446039-22445863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
182-441
               

               
Cow position:
               
chr5:48009730-48009983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
182-466
               

               
Cow position:
               
chr5:57575901-57575610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
182-535
               

               
Cow position:
               
chr5:53855833-53855465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
182-564
               

               
Cow position:
               
chr5:42744909-42744526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
183-338
               

               
Cow position:
               
chr5:45574238-45574399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
183-462
               

               
Cow position:
               
chr5:28927467-28927744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
128, 10
               

               
Conread position:
               
183-467
               

               
Cow position:
               
chr5:51935316-51935026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
183-534
               

               
Cow position:
               
chr5:32955969-32956332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
186-439
               

               
Cow position:
               
chr5:21534986-21535246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 231
               

               
Conread position:
               
186-538
               

               
Cow position:
               
chr5:41609409-41609063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
186-571
               

               
Cow position:
               
chr5:55989865-55989464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
187-460
               

               
Cow position:
               
chr5:3669024-3668748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
188-432
               

               
Cow position:
               
chr5:6890900-6891143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
190-443
               

               
Cow position:
               
chr5:67540080-67540339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
40, 160
               

               
Conread position:
               
190-466
               

               
Cow position:
               
chr5:21920492-21920212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
190-466
               

               
Cow position:
               
chr5:58793486-58793770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
191-414
               

               
Cow position:
               
chr5:56636015-56635793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
191-466
               

               
Cow position:
               
chr5:9390677-9390380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
192-534
               

               
Cow position:
               
chr5:41129861-41129527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
192-545
               

               
Cow position:
               
chr5:75436768-75437146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 362
               

               
Conread position:
               
192-546
               

               
Cow position:
               
chr5:32696704-32697063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 171
               

               
Conread position:
               
193-452
               

               
Cow position:
               
chr5:61840310-61840041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 115
               

               
Conread position:
               
193-463
               

               
Cow position:
               
chr5:65886892-65887167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 78
               

               
Conread position:
               
193-546
               

               
Cow position:
               
chr5:52644962-52645329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 347
               

               
Conread position:
               
194-521
               

               
Cow position:
               
chr5:56134854-56135196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
115, 7
               

               
Conread position:
               
195-452
               

               
Cow position:
               
chr5:65883656-65883921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
195-506
               

               
Cow position:
               
chr5:55929060-55928740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 197
               

               
Conread position:
               
195-537
               

               
Cow position:
               
chr5:31481264-31480910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
197-467
               

               
Cow position:
               
chr5:35209363-35209633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
105, 97
               

               
Conread position:
               
197-467
               

               
Cow position:
               
chr5:38805231-38805500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
198-466
               

               
Cow position:
               
chr5:28926069-28926343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
200-420
               

               
Cow position:
               
chr5:57561634-57561404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
201-467
               

               
Cow position:
               
chr5:36486603-36486329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
202-533
               

               
Cow position:
               
chr5:47313579-47313234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
203-543
               

               
Cow position:
               
chr5:33414303-33414653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
53, 34
               

               
Conread position:
               
207-447
               

               
Cow position:
               
chr5:7755465-7755702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
207-463
               

               
Cow position:
               
chr5:40039662-40039923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
208-537
               

               
Cow position:
               
chr5:31918745-31918410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
209-523
               

               
Cow position:
               
chr5:1766245-1766574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
210-466
               

               
Cow position:
               
chr5:57591789-57591535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
210-547
               

               
Cow position:
               
chr5:3281936-3281581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr5:32140614-32140863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
214-463
               

               
Cow position:
               
chr5:50975997-50975734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
214-534
               

               
Cow position:
               
chr5:16509203-16508854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 235
               

               
Conread position:
               
216-538
               

               
Cow position:
               
chr5:34638976-34638643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
216-539
               

               
Cow position:
               
chr5:71505225-71504883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
32, 137
               

               
Conread position:
               
220-460
               

               
Cow position:
               
chr5:47704035-47704283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 178
               

               
Conread position:
               
220-503
               

               
Cow position:
               
chr5:29213029-29212739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
220-504
               

               
Cow position:
               
chr5:36255166-36255457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 177
               

               
Conread position:
               
220-524
               

               
Cow position:
               
chr5:64137347-64137021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
220-533
               

               
Cow position:
               
chr5:73080296-73079973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
220-545
               

               
Cow position:
               
chr5:65601548-65601210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
220-591
               

               
Cow position:
               
chr5:68872284-68871899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
10, 40
               

               
Conread position:
               
221-460
               

               
Cow position:
               
chr5:55821462-55821217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 214
               

               
Conread position:
               
222-461
               

               
Cow position:
               
chr5:54404798-54405046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
223-420
               

               
Cow position:
               
chr5:34192993-34192786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
223-521
               

               
Cow position:
               
chr5:65765043-65765339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
226-438
               

               
Cow position:
               
chr5:33552340-33552539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
226-452
               

               
Cow position:
               
chr5:39181833-39182056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
226-467
               

               
Cow position:
               
chr5:46122270-46122510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
226-561
               

               
Cow position:
               
chr5:56820181-56820532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
228-536
               

               
Cow position:
               
chr5:58229777-58229461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
147, 84
               

               
Conread position:
               
230-536
               

               
Cow position:
               
chr5:39094629-39094313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
231-452
               

               
Cow position:
               
chr5:50972604-50972385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
231-531
               

               
Cow position:
               
chr5:31020062-31020351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
233-444
               

               
Cow position:
               
chr5:35449312-35449116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
243-466
               

               
Cow position:
               
chr5:10261165-10261394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
243-467
               

               
Cow position:
               
chr5:29979920-29980142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
246-537
               

               
Cow position:
               
chr5:3280809-3281111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
249-535
               

               
Cow position:
               
chr5:65924630-65924940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
250-460
               

               
Cow position:
               
chr5:55145307-55145512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
251-452
               

               
Cow position:
               
chr5:24485374-24485576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
251-531
               

               
Cow position:
               
chr5:2500123-2500418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
251-543
               

               
Cow position:
               
chr5:43474902-43474599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
203, 11
               

               
Conread position:
               
253-439
               

               
Cow position:
               
chr5:41486680-41486873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
254-536
               

               
Cow position:
               
chr5:58144543-58144848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
254-541
               

               
Cow position:
               
chr5:45940553-45940856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
255-445
               

               
Cow position:
               
chr5:56433860-56433666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
255-466
               

               
Cow position:
               
chr5:50637880-50637674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
255-530
               

               
Cow position:
               
chr5:34885104-34885392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
256-466
               

               
Cow position:
               
chr5:54713677-54713892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 170
               

               
Conread position:
               
256-467
               

               
Cow position:
               
chr5:23866117-23866321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
256-537
               

               
Cow position:
               
chr5:44583079-44583361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
187, 57
               

               
Conread position:
               
256-543
               

               
Cow position:
               
chr5:34115706-34115413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
258-462
               

               
Cow position:
               
chr5:51800921-51801126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 168
               

               
Conread position:
               
258-471
               

               
Cow position:
               
chr5:1027643-1027853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
259-463
               

               
Cow position:
               
chr5:35235659-35235861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
261-399
               

               
Cow position:
               
chr5:59257936-59257801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
263-465
               

               
Cow position:
               
chr5:37713849-37714056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
263-466
               

               
Cow position:
               
chr5:51357455-51357659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
265-460
               

               
Cow position:
               
chr5:30816763-30816566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 150
               

               
Conread position:
               
265-535
               

               
Cow position:
               
chr5:59443205-59443490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
266-467
               

               
Cow position:
               
chr5:45037056-45036865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 5
               

               
Conread position:
               
267-466
               

               
Cow position:
               
chr5:8994523-8994721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
268-431
               

               
Cow position:
               
chr5:60448257-60448090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
268-452
               

               
Cow position:
               
chr5:3004764-3004585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
156, 98
               

               
Conread position:
               
268-507
               

               
Cow position:
               
chr5:7140065-7140318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
269-466
               

               
Cow position:
               
chr5:37065132-37064938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
269-524
               

               
Cow position:
               
chr5:42777805-42777534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
269-538
               

               
Cow position:
               
chr5:34916171-34915900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
174, 44
               

               
Conread position:
               
269-546
               

               
Cow position:
               
chr5:7921364-7921631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
270-465
               

               
Cow position:
               
chr5:38647394-38647201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
174, 55
               

               
Conread position:
               
270-466
               

               
Cow position:
               
chr5:43395110-43395294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
270-466
               

               
Cow position:
               
chr5:71579215-71579018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 183
               

               
Conread position:
               
270-522
               

               
Cow position:
               
chr5:51490725-51490982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
270-534
               

               
Cow position:
               
chr5:27015719-27015450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 68
               

               
Conread position:
               
270-537
               

               
Cow position:
               
chr5:20345201-20344926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 170
               

               
Conread position:
               
270-543
               

               
Cow position:
               
chr5:16185127-16184841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
270-545
               

               
Cow position:
               
chr5:30638824-30639100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
271-452
               

               
Cow position:
               
chr5:17644616-17644801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
272-455
               

               
Cow position:
               
chr5:47721581-47721393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
274-452
               

               
Cow position:
               
chr5:6130389-6130207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
276-442
               

               
Cow position:
               
chr5:56334720-56334543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
280-462
               

               
Cow position:
               
chr5:42748180-42748004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
280-541
               

               
Cow position:
               
chr5:62826723-62826998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 236
               

               
Conread position:
               
284-461
               

               
Cow position:
               
chr5:44849706-44849877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
284-538
               

               
Cow position:
               
chr5:50950579-50950311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
286-453
               

               
Cow position:
               
chr5:49559190-49559021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
298-562
               

               
Cow position:
               
chr5:32963622-32963898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
304-466
               

               
Cow position:
               
chr5:14420340-14420500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
305-462
               

               
Cow position:
               
chr5:40356863-40357022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
308-466
               

               
Cow position:
               
chr5:59297961-59298114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
309-460
               

               
Cow position:
               
chr5:28957618-28957766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
310-533
               

               
Cow position:
               
chr5:33467045-33467279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 228
               

               
Conread position:
               
313-466
               

               
Cow position:
               
chr5:31434255-31434110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
313-520
               

               
Cow position:
               
chr5:18090718-18090501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
313-527
               

               
Cow position:
               
chr5:53145890-53146102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
313-536
               

               
Cow position:
               
chr5:72150242-72150008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
9, 166
               

               
Conread position:
               
315-506
               

               
Cow position:
               
chr5:57271273-57271478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
316-465
               

               
Cow position:
               
chr5:9083331-9083181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
319-466
               

               
Cow position:
               
chr5:24616127-24616278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
319-467
               

               
Cow position:
               
chr5:62026959-62027103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 73
               

               
Conread position:
               
319-531
               

               
Cow position:
               
chr5:60520150-60519929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
139, 104
               

               
Conread position:
               
319-534
               

               
Cow position:
               
chr5:45706034-45705805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr5:31469594-31469825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 181
               

               
Conread position:
               
323-467
               

               
Cow position:
               
chr5:15426513-15426369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
323-471
               

               
Cow position:
               
chr5:63865779-63865632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
326-467
               

               
Cow position:
               
chr5:10248679-10248539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
328-466
               

               
Cow position:
               
chr5:20554768-20554905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
330-466
               

               
Cow position:
               
chr5:13691591-13691730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
343-466
               

               
Cow position:
               
chr5:50870510-50870386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
343-500
               

               
Cow position:
               
chr5:44028779-44028933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
344-463
               

               
Cow position:
               
chr5:69099495-69099376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-462
               

               
Cow position:
               
chr5:61049325-61049204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
350-452
               

               
Cow position:
               
chr5:46425894-46425996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-467
               

               
Cow position:
               
chr5:14415736-14415615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               
Show alignments to all cow chromosomes.