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Cow genome map

           
Conread name:
           
rpldo0136_h2.y1
        

               
Conread position:
               
26-533
               

               
Cow position:
               
chr6:67187987-67187468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 5
               

               
Conread position:
               
46-467
               

               
Cow position:
               
chr6:33917580-33917993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
184, 32
               

               
Conread position:
               
62-466
               

               
Cow position:
               
chr6:62325257-62324850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 139
               

               
Conread position:
               
63-447
               

               
Cow position:
               
chr6:12669369-12668977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
63-534
               

               
Cow position:
               
chr6:46558328-46557830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
26, 287
               

               
Conread position:
               
64-531
               

               
Cow position:
               
chr6:32126314-32125844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 47
               

               
Conread position:
               
65-547
               

               
Cow position:
               
chr6:28148525-28148015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
66-364
               

               
Cow position:
               
chr6:47884788-47885064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
66-427
               

               
Cow position:
               
chr6:36645646-36645282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
66-501
               

               
Cow position:
               
chr6:21061620-21062076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
38, 129
               

               
Conread position:
               
67-466
               

               
Cow position:
               
chr6:67574660-67574266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
67-467
               

               
Cow position:
               
chr6:47026728-47026339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
67-483
               

               
Cow position:
               
chr6:35415259-35415678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
65, 82
               

               
Conread position:
               
68-459
               

               
Cow position:
               
chr6:45388586-45388192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
69-466
               

               
Cow position:
               
chr6:8966343-8965948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 7
               

               
Conread position:
               
69-466
               

               
Cow position:
               
chr6:52478142-52478568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 197
               

               
Conread position:
               
70-425
               

               
Cow position:
               
chr6:60273744-60274110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
71-466
               

               
Cow position:
               
chr6:18447259-18447650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr6:55417270-55417572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 37
               

               
Conread position:
               
72-433
               

               
Cow position:
               
chr6:46172998-46173370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
72-462
               

               
Cow position:
               
chr6:26450562-26450180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
72-466
               

               
Cow position:
               
chr6:20157588-20157184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
73-301
               

               
Cow position:
               
chr6:47173786-47174005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
73-541
               

               
Cow position:
               
chr6:4864307-4864767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
75-463
               

               
Cow position:
               
chr6:27888606-27888210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
75-466
               

               
Cow position:
               
chr6:6098017-6098423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
75-531
               

               
Cow position:
               
chr6:5302170-5302627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
76-304
               

               
Cow position:
               
chr6:66947570-66947799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
76-366
               

               
Cow position:
               
chr6:2078557-2078865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
76-388
               

               
Cow position:
               
chr6:37395139-37395475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
76-466
               

               
Cow position:
               
chr6:10176049-10176444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 235
               

               
Conread position:
               
76-466
               

               
Cow position:
               
chr6:12501092-12500719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
76-519
               

               
Cow position:
               
chr6:21736646-21737093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 41
               

               
Conread position:
               
76-533
               

               
Cow position:
               
chr6:45064786-45065231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
76-538
               

               
Cow position:
               
chr6:61269566-61269102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
77-431
               

               
Cow position:
               
chr6:59602955-59603317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
10, 307
               

               
Conread position:
               
77-461
               

               
Cow position:
               
chr6:15446937-15447344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
77-463
               

               
Cow position:
               
chr6:47616392-47616751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
218, 32
               

               
Conread position:
               
78-459
               

               
Cow position:
               
chr6:18080261-18080646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
78-511
               

               
Cow position:
               
chr6:10399660-10400098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
78-521
               

               
Cow position:
               
chr6:35436243-35435790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
78-536
               

               
Cow position:
               
chr6:54365070-54365551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
5, 20
               

               
Conread position:
               
79-244
               

               
Cow position:
               
chr6:17412318-17412488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 40
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr6:33510048-33509712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 190
               

               
Conread position:
               
79-424
               

               
Cow position:
               
chr6:62370941-62371284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 49
               

               
Conread position:
               
79-443
               

               
Cow position:
               
chr6:35726347-35725973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
79-447
               

               
Cow position:
               
chr6:23401738-23402115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 175
               

               
Conread position:
               
79-452
               

               
Cow position:
               
chr6:10613076-10612734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
233, 31
               

               
Conread position:
               
79-465
               

               
Cow position:
               
chr6:48572632-48573024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
79-471
               

               
Cow position:
               
chr6:17313994-17313583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 275
               

               
Conread position:
               
79-522
               

               
Cow position:
               
chr6:38771532-38771082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 182
               

               
Conread position:
               
79-534
               

               
Cow position:
               
chr6:64432196-64431711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
79-538
               

               
Cow position:
               
chr6:11192234-11192680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
79-555
               

               
Cow position:
               
chr6:2583115-2582629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
80-399
               

               
Cow position:
               
chr6:16287822-16288130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
80-458
               

               
Cow position:
               
chr6:9219518-9219136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 153
               

               
Conread position:
               
80-458
               

               
Cow position:
               
chr6:59104860-59104471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
80-488
               

               
Cow position:
               
chr6:43134685-43135106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
80-540
               

               
Cow position:
               
chr6:44078760-44078290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
81-311
               

               
Cow position:
               
chr6:1475581-1475357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
81-339
               

               
Cow position:
               
chr6:59301548-59301806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
149, 45
               

               
Conread position:
               
81-350
               

               
Cow position:
               
chr6:41655811-41656073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
133, 32
               

               
Conread position:
               
81-374
               

               
Cow position:
               
chr6:60468485-60468184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
81-452
               

               
Cow position:
               
chr6:9750802-9751171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
81-463
               

               
Cow position:
               
chr6:8562976-8562578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 127
               

               
Conread position:
               
81-463
               

               
Cow position:
               
chr6:48803396-48803779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
81-465
               

               
Cow position:
               
chr6:55282048-55282430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 101
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr6:24781296-24781705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 204
               

               
Conread position:
               
81-466
               

               
Cow position:
               
chr6:61631364-61631754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
81-504
               

               
Cow position:
               
chr6:3545914-3545508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
224, 78
               

               
Conread position:
               
81-520
               

               
Cow position:
               
chr6:17997073-17997527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
81-520
               

               
Cow position:
               
chr6:57404892-57405336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 23
               

               
Conread position:
               
81-529
               

               
Cow position:
               
chr6:49421552-49421997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
81-533
               

               
Cow position:
               
chr6:36203065-36202603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
81-536
               

               
Cow position:
               
chr6:37635024-37634562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
81-538
               

               
Cow position:
               
chr6:32122150-32121683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
81-543
               

               
Cow position:
               
chr6:54490502-54490975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 33
               

               
Conread position:
               
81-554
               

               
Cow position:
               
chr6:60143945-60144422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
81-557
               

               
Cow position:
               
chr6:5095298-5095800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
82-247
               

               
Cow position:
               
chr6:4756060-4755890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
82-380
               

               
Cow position:
               
chr6:56986393-56986705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
82-400
               

               
Cow position:
               
chr6:5330667-5330333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
82-431
               

               
Cow position:
               
chr6:17557629-17557271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
82-443
               

               
Cow position:
               
chr6:10225400-10225761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
82-460
               

               
Cow position:
               
chr6:47575145-47574766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr6:1704049-1703673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr6:19264258-19264641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr6:31846990-31847361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
34, 158
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr6:53519385-53519764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
82-507
               

               
Cow position:
               
chr6:21231763-21231337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
82-521
               

               
Cow position:
               
chr6:56850260-56849805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
82-524
               

               
Cow position:
               
chr6:29240186-29239727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 190
               

               
Conread position:
               
82-531
               

               
Cow position:
               
chr6:29210729-29210279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
82-533
               

               
Cow position:
               
chr6:15300586-15301042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 188
               

               
Conread position:
               
82-539
               

               
Cow position:
               
chr6:2547504-2547014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
82-539
               

               
Cow position:
               
chr6:23696237-23695764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
82-543
               

               
Cow position:
               
chr6:18988447-18987983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
82-569
               

               
Cow position:
               
chr6:16102936-16103460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 190
               

               
Conread position:
               
83-282
               

               
Cow position:
               
chr6:59297297-59297095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
83-369
               

               
Cow position:
               
chr6:18117807-18118100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
83-390
               

               
Cow position:
               
chr6:8600247-8599936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 183
               

               
Conread position:
               
83-466
               

               
Cow position:
               
chr6:4469021-4468614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 222
               

               
Conread position:
               
83-466
               

               
Cow position:
               
chr6:47520296-47519905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
83-466
               

               
Cow position:
               
chr6:51581013-51581398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
83-531
               

               
Cow position:
               
chr6:27851454-27851927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
25, 167
               

               
Conread position:
               
84-270
               

               
Cow position:
               
chr6:15172809-15172623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
84-358
               

               
Cow position:
               
chr6:44623842-44623570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
84-424
               

               
Cow position:
               
chr6:7119380-7119713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 81
               

               
Conread position:
               
84-425
               

               
Cow position:
               
chr6:17548727-17549085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
84-451
               

               
Cow position:
               
chr6:47356067-47355694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
84-462
               

               
Cow position:
               
chr6:21004932-21004528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
84-538
               

               
Cow position:
               
chr6:44194305-44194775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
84-566
               

               
Cow position:
               
chr6:38441421-38440925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
85-395
               

               
Cow position:
               
chr6:23353807-23353479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 200
               

               
Conread position:
               
85-456
               

               
Cow position:
               
chr6:58370999-58370608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 158
               

               
Conread position:
               
85-467
               

               
Cow position:
               
chr6:24222937-24223302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
85-535
               

               
Cow position:
               
chr6:16700495-16700034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
85-539
               

               
Cow position:
               
chr6:9008380-9008841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 20
               

               
Conread position:
               
86-457
               

               
Cow position:
               
chr6:21235286-21234908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
86-545
               

               
Cow position:
               
chr6:15937601-15938087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 235
               

               
Conread position:
               
87-467
               

               
Cow position:
               
chr6:38610222-38609822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
87-473
               

               
Cow position:
               
chr6:4559065-4559455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
87-538
               

               
Cow position:
               
chr6:3952759-3952297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
89-377
               

               
Cow position:
               
chr6:18144437-18144137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
90-389
               

               
Cow position:
               
chr6:9302488-9302784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
91-466
               

               
Cow position:
               
chr6:10105749-10106137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
91-569
               

               
Cow position:
               
chr6:67951191-67950701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 185
               

               
Conread position:
               
92-374
               

               
Cow position:
               
chr6:22525568-22525279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
93-531
               

               
Cow position:
               
chr6:49398386-49398839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 204
               

               
Conread position:
               
97-364
               

               
Cow position:
               
chr6:36454375-36454634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
97-533
               

               
Cow position:
               
chr6:31564113-31564558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
97-535
               

               
Cow position:
               
chr6:24583014-24583441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 21
               

               
Conread position:
               
97-535
               

               
Cow position:
               
chr6:53932607-53933065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
97-536
               

               
Cow position:
               
chr6:40032417-40031966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
97-547
               

               
Cow position:
               
chr6:36470339-36470799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
99-430
               

               
Cow position:
               
chr6:26043972-26043643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 175
               

               
Conread position:
               
99-462
               

               
Cow position:
               
chr6:31535336-31535708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 181
               

               
Conread position:
               
99-520
               

               
Cow position:
               
chr6:611780-611349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
99-534
               

               
Cow position:
               
chr6:15243076-15242608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 296
               

               
Conread position:
               
100-516
               

               
Cow position:
               
chr6:54864438-54864874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
101-299
               

               
Cow position:
               
chr6:30825542-30825742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 153
               

               
Conread position:
               
101-521
               

               
Cow position:
               
chr6:28477384-28476969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
102-456
               

               
Cow position:
               
chr6:11247002-11246628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
102-462
               

               
Cow position:
               
chr6:24031597-24031238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
102-524
               

               
Cow position:
               
chr6:23532880-23532448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
102-533
               

               
Cow position:
               
chr6:37149416-37148972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
103-354
               

               
Cow position:
               
chr6:8094053-8094324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
103-453
               

               
Cow position:
               
chr6:45596313-45596670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
103-456
               

               
Cow position:
               
chr6:19446486-19446124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 177
               

               
Conread position:
               
103-520
               

               
Cow position:
               
chr6:7189898-7190331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 77
               

               
Conread position:
               
103-521
               

               
Cow position:
               
chr6:39358110-39358553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
13, 202
               

               
Conread position:
               
103-538
               

               
Cow position:
               
chr6:21535273-21534831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 245
               

               
Conread position:
               
105-467
               

               
Cow position:
               
chr6:16634004-16634362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
107-466
               

               
Cow position:
               
chr6:38207257-38207636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
107-569
               

               
Cow position:
               
chr6:4383703-4383232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
108-315
               

               
Cow position:
               
chr6:54127593-54127805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
108-462
               

               
Cow position:
               
chr6:57546001-57546353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
108-463
               

               
Cow position:
               
chr6:53024583-53024932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
108-466
               

               
Cow position:
               
chr6:30974256-30973900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
109-447
               

               
Cow position:
               
chr6:12091759-12092112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 318
               

               
Conread position:
               
109-452
               

               
Cow position:
               
chr6:53841276-53841630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 220
               

               
Conread position:
               
114-534
               

               
Cow position:
               
chr6:35842880-35842433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 92
               

               
Conread position:
               
114-536
               

               
Cow position:
               
chr6:35990019-35990450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 248
               

               
Conread position:
               
114-558
               

               
Cow position:
               
chr6:33302616-33302163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
65, 202
               

               
Conread position:
               
115-284
               

               
Cow position:
               
chr6:15058594-15058415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
115-324
               

               
Cow position:
               
chr6:33450758-33450970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
115-350
               

               
Cow position:
               
chr6:30701642-30701414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
115, 47
               

               
Conread position:
               
115-357
               

               
Cow position:
               
chr6:2899365-2899607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
115-367
               

               
Cow position:
               
chr6:10189981-10189732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
115-368
               

               
Cow position:
               
chr6:2585160-2584894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 185
               

               
Conread position:
               
115-396
               

               
Cow position:
               
chr6:22985643-22985933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
115-407
               

               
Cow position:
               
chr6:37463224-37462936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
115-413
               

               
Cow position:
               
chr6:143159-143460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
115-416
               

               
Cow position:
               
chr6:44867327-44867636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
115-417
               

               
Cow position:
               
chr6:19293017-19292702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
48, 231
               

               
Conread position:
               
115-423
               

               
Cow position:
               
chr6:1429853-1429537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
115-424
               

               
Cow position:
               
chr6:43345221-43345549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
115-443
               

               
Cow position:
               
chr6:33206948-33206630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr6:62670090-62669745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 228
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr6:14914015-14914375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 28
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr6:19696028-19695675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 149
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr6:47305561-47305208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 242
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr6:60740229-60739884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
115-456
               

               
Cow position:
               
chr6:32268668-32269010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 161
               

               
Conread position:
               
115-456
               

               
Cow position:
               
chr6:65264332-65264671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
115-457
               

               
Cow position:
               
chr6:28999738-29000058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
115-460
               

               
Cow position:
               
chr6:1907720-1907405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
115-460
               

               
Cow position:
               
chr6:21399535-21399892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
115-460
               

               
Cow position:
               
chr6:52413081-52412719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
46, 182
               

               
Conread position:
               
115-461
               

               
Cow position:
               
chr6:60118361-60118010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
115-462
               

               
Cow position:
               
chr6:61514979-61515335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr6:5113828-5114188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr6:53138719-53139070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 44
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr6:60819734-60819374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr6:65871250-65870883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chr6:65903407-65903758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr6:15782314-15782667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr6:36652618-36652277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
115-534
               

               
Cow position:
               
chr6:28155954-28156345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
115, 12
               

               
Conread position:
               
115-537
               

               
Cow position:
               
chr6:19402064-19401635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
115-537
               

               
Cow position:
               
chr6:63047795-63047347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
115-538
               

               
Cow position:
               
chr6:13687597-13688039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 243
               

               
Conread position:
               
115-538
               

               
Cow position:
               
chr6:51835617-51835172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
115-543
               

               
Cow position:
               
chr6:12338209-12337751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 417
               

               
Conread position:
               
115-543
               

               
Cow position:
               
chr6:15305790-15305352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 150
               

               
Conread position:
               
115-544
               

               
Cow position:
               
chr6:17090800-17090361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
115-545
               

               
Cow position:
               
chr6:46466037-46465592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 95
               

               
Conread position:
               
115-557
               

               
Cow position:
               
chr6:34195943-34196394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
116-247
               

               
Cow position:
               
chr6:34463373-34463512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chr6:61644638-61644954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
116-441
               

               
Cow position:
               
chr6:32287849-32287518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
116-447
               

               
Cow position:
               
chr6:46292137-46292468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
116-503
               

               
Cow position:
               
chr6:63720410-63720004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
116-542
               

               
Cow position:
               
chr6:8804325-8804758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
116-546
               

               
Cow position:
               
chr6:24004738-24004312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
117-466
               

               
Cow position:
               
chr6:445545-445170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
118-451
               

               
Cow position:
               
chr6:8125545-8125197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 258
               

               
Conread position:
               
118-514
               

               
Cow position:
               
chr6:38641710-38641292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 134
               

               
Conread position:
               
118-591
               

               
Cow position:
               
chr6:6994761-6995224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
119-452
               

               
Cow position:
               
chr6:60784086-60783739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 139
               

               
Conread position:
               
121-389
               

               
Cow position:
               
chr6:54478956-54479221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
121-395
               

               
Cow position:
               
chr6:17068439-17068723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
121-466
               

               
Cow position:
               
chr6:50984438-50984083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 219
               

               
Conread position:
               
121-530
               

               
Cow position:
               
chr6:26915541-26915108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
123-539
               

               
Cow position:
               
chr6:13367493-13367066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
125-534
               

               
Cow position:
               
chr6:6060362-6060785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
125-539
               

               
Cow position:
               
chr6:40774125-40774579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
125-585
               

               
Cow position:
               
chr6:45690406-45690852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 185
               

               
Conread position:
               
131-461
               

               
Cow position:
               
chr6:16191867-16191529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
132-370
               

               
Cow position:
               
chr6:16352161-16352396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
96, 158
               

               
Conread position:
               
132-400
               

               
Cow position:
               
chr6:2623969-2623703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
132-543
               

               
Cow position:
               
chr6:6067502-6067912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 189
               

               
Conread position:
               
133-396
               

               
Cow position:
               
chr6:67282092-67281824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
134-389
               

               
Cow position:
               
chr6:22215283-22215536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
135-548
               

               
Cow position:
               
chr6:68049606-68049198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 31
               

               
Conread position:
               
136-316
               

               
Cow position:
               
chr6:61576012-61575832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
136-466
               

               
Cow position:
               
chr6:40713311-40713643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
136-523
               

               
Cow position:
               
chr6:47339166-47339564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 206
               

               
Conread position:
               
141-543
               

               
Cow position:
               
chr6:21590898-21590484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
148-538
               

               
Cow position:
               
chr6:16707191-16706779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
5, 105
               

               
Conread position:
               
153-457
               

               
Cow position:
               
chr6:51969253-51968929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
5, 111
               

               
Conread position:
               
153-466
               

               
Cow position:
               
chr6:8787866-8788178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
153-530
               

               
Cow position:
               
chr6:35103153-35103549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
154-447
               

               
Cow position:
               
chr6:582100-582397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
154-460
               

               
Cow position:
               
chr6:42565855-42565550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
154-466
               

               
Cow position:
               
chr6:4691805-4692125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
155-475
               

               
Cow position:
               
chr6:55892935-55892611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
157-467
               

               
Cow position:
               
chr6:19427617-19427307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
158-467
               

               
Cow position:
               
chr6:65872054-65871755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
158-538
               

               
Cow position:
               
chr6:57164592-57164200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
160-536
               

               
Cow position:
               
chr6:49002578-49002952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 6
               

               
Conread position:
               
160-555
               

               
Cow position:
               
chr6:28976875-28977278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
70, 207
               

               
Conread position:
               
161-364
               

               
Cow position:
               
chr6:55535588-55535792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
66, 60
               

               
Conread position:
               
161-460
               

               
Cow position:
               
chr6:37199374-37199674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
161-462
               

               
Cow position:
               
chr6:63298868-63299163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr6:416289-415953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr6:6401116-6400807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr6:7989254-7989557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr6:35993747-35993436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
161-466
               

               
Cow position:
               
chr6:65904111-65904409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
161-487
               

               
Cow position:
               
chr6:47799457-47799119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
166-374
               

               
Cow position:
               
chr6:28178796-28178999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
166-462
               

               
Cow position:
               
chr6:67214908-67214603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
64, 175
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr6:59069459-59069769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 188
               

               
Conread position:
               
166-470
               

               
Cow position:
               
chr6:14958181-14958494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
166-475
               

               
Cow position:
               
chr6:60667568-60667267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 14
               

               
Conread position:
               
166-547
               

               
Cow position:
               
chr6:51675065-51674679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
166-562
               

               
Cow position:
               
chr6:6343588-6343175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
166-562
               

               
Cow position:
               
chr6:21542481-21542071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
166-591
               

               
Cow position:
               
chr6:21111112-21110693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
167-392
               

               
Cow position:
               
chr6:36284398-36284171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
167-420
               

               
Cow position:
               
chr6:17794606-17794855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 148
               

               
Conread position:
               
167-422
               

               
Cow position:
               
chr6:3592555-3592300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
40, 44
               

               
Conread position:
               
167-437
               

               
Cow position:
               
chr6:58597348-58597620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
59, 182
               

               
Conread position:
               
167-466
               

               
Cow position:
               
chr6:16316474-16316165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
167-510
               

               
Cow position:
               
chr6:66131462-66131106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
167-533
               

               
Cow position:
               
chr6:66531664-66532026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 75
               

               
Conread position:
               
168-443
               

               
Cow position:
               
chr6:53674020-53673741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
169-531
               

               
Cow position:
               
chr6:57118786-57119151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 50
               

               
Conread position:
               
170-391
               

               
Cow position:
               
chr6:33929392-33929620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
170-466
               

               
Cow position:
               
chr6:19013217-19012928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
170-533
               

               
Cow position:
               
chr6:8318012-8318391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
171-412
               

               
Cow position:
               
chr6:10487739-10487496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
171-460
               

               
Cow position:
               
chr6:46865438-46865732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 158
               

               
Conread position:
               
171-464
               

               
Cow position:
               
chr6:67456871-67456570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
171-467
               

               
Cow position:
               
chr6:52901392-52901098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 256
               

               
Conread position:
               
171-471
               

               
Cow position:
               
chr6:11169856-11169559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 216
               

               
Conread position:
               
172-352
               

               
Cow position:
               
chr6:19131583-19131398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
172-421
               

               
Cow position:
               
chr6:16764493-16764752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 188
               

               
Conread position:
               
172-458
               

               
Cow position:
               
chr6:60442560-60442281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 79
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr6:25407239-25407533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
172-467
               

               
Cow position:
               
chr6:54867670-54867370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 262
               

               
Conread position:
               
172-510
               

               
Cow position:
               
chr6:19681372-19681726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
58, 201
               

               
Conread position:
               
174-423
               

               
Cow position:
               
chr6:6673258-6673000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
27, 246
               

               
Conread position:
               
174-463
               

               
Cow position:
               
chr6:16423852-16423561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
53, 184
               

               
Conread position:
               
175-467
               

               
Cow position:
               
chr6:58074197-58073903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
178-371
               

               
Cow position:
               
chr6:68652204-68652403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
179-434
               

               
Cow position:
               
chr6:20196157-20196405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
180-466
               

               
Cow position:
               
chr6:13592854-13592569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
31, 194
               

               
Conread position:
               
180-466
               

               
Cow position:
               
chr6:14838899-14839171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
180-524
               

               
Cow position:
               
chr6:242936-242598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
215, 48
               

               
Conread position:
               
180-545
               

               
Cow position:
               
chr6:60350147-60350536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
181-387
               

               
Cow position:
               
chr6:17527445-17527655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
181-466
               

               
Cow position:
               
chr6:31526190-31525907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
181-467
               

               
Cow position:
               
chr6:1499784-1499496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
181-535
               

               
Cow position:
               
chr6:66874493-66874137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
182-437
               

               
Cow position:
               
chr6:21514467-21514735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
182-537
               

               
Cow position:
               
chr6:32676941-32677299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 65
               

               
Conread position:
               
183-390
               

               
Cow position:
               
chr6:61142420-61142633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
183-531
               

               
Cow position:
               
chr6:8637422-8637052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
184-417
               

               
Cow position:
               
chr6:66375192-66375426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 141
               

               
Conread position:
               
184-424
               

               
Cow position:
               
chr6:59718937-59718693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 88
               

               
Conread position:
               
184-543
               

               
Cow position:
               
chr6:20097818-20098198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 69
               

               
Conread position:
               
187-438
               

               
Cow position:
               
chr6:12845513-12845262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
146, 64
               

               
Conread position:
               
190-368
               

               
Cow position:
               
chr6:65845996-65846172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
190-377
               

               
Cow position:
               
chr6:51399209-51399028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
190-452
               

               
Cow position:
               
chr6:27815335-27815600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 187
               

               
Conread position:
               
190-452
               

               
Cow position:
               
chr6:28318531-28318278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
191-467
               

               
Cow position:
               
chr6:47326940-47327209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
191-543
               

               
Cow position:
               
chr6:60057521-60057899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 102
               

               
Conread position:
               
191-545
               

               
Cow position:
               
chr6:27110731-27110354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
192-457
               

               
Cow position:
               
chr6:20206408-20206139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
196-466
               

               
Cow position:
               
chr6:23247837-23248104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
197-527
               

               
Cow position:
               
chr6:54368776-54369118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
198-347
               

               
Cow position:
               
chr6:51086195-51086044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
198-441
               

               
Cow position:
               
chr6:5413947-5413699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
198-453
               

               
Cow position:
               
chr6:25008845-25008582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
198-463
               

               
Cow position:
               
chr6:61608639-61608369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
198-524
               

               
Cow position:
               
chr6:899166-899500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
198-538
               

               
Cow position:
               
chr6:31635557-31635912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
199-591
               

               
Cow position:
               
chr6:38614938-38614546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
200-441
               

               
Cow position:
               
chr6:377250-377011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
200-452
               

               
Cow position:
               
chr6:55763978-55763723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
200-466
               

               
Cow position:
               
chr6:12542805-12543074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 249
               

               
Conread position:
               
200-539
               

               
Cow position:
               
chr6:18048899-18049254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 318
               

               
Conread position:
               
200-546
               

               
Cow position:
               
chr6:18582688-18583030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
204-470
               

               
Cow position:
               
chr6:31854475-31854207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
207-544
               

               
Cow position:
               
chr6:16746461-16746106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
208-466
               

               
Cow position:
               
chr6:2607723-2607472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
220-459
               

               
Cow position:
               
chr6:60850275-60850524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
220-463
               

               
Cow position:
               
chr6:1371121-1371369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 214
               

               
Conread position:
               
220-463
               

               
Cow position:
               
chr6:22502806-22503061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
220-546
               

               
Cow position:
               
chr6:50747102-50746742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
220-546
               

               
Cow position:
               
chr6:54600453-54600133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 160
               

               
Conread position:
               
223-452
               

               
Cow position:
               
chr6:54036043-54036266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
223-547
               

               
Cow position:
               
chr6:48282092-48281759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 106
               

               
Conread position:
               
224-535
               

               
Cow position:
               
chr6:62924897-62925220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
42, 204
               

               
Conread position:
               
225-403
               

               
Cow position:
               
chr6:54364894-54365085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
226-538
               

               
Cow position:
               
chr6:1770101-1770423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 165
               

               
Conread position:
               
226-591
               

               
Cow position:
               
chr6:3929415-3929037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
227-441
               

               
Cow position:
               
chr6:44127708-44127486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
229-451
               

               
Cow position:
               
chr6:59297095-59296870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
230-421
               

               
Cow position:
               
chr6:56860636-56860449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
144, 30
               

               
Conread position:
               
233-460
               

               
Cow position:
               
chr6:55508480-55508715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr6:44099169-44098958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
240-463
               

               
Cow position:
               
chr6:3118110-3118335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
240-510
               

               
Cow position:
               
chr6:14850631-14850917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
246-463
               

               
Cow position:
               
chr6:60239316-60239530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 81
               

               
Conread position:
               
251-466
               

               
Cow position:
               
chr6:44984403-44984185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 191
               

               
Conread position:
               
251-533
               

               
Cow position:
               
chr6:49685657-49685360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
252-466
               

               
Cow position:
               
chr6:607330-607121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 16
               

               
Conread position:
               
253-452
               

               
Cow position:
               
chr6:9839243-9839031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
254-466
               

               
Cow position:
               
chr6:49694449-49694234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
254-467
               

               
Cow position:
               
chr6:7824836-7824618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
255-466
               

               
Cow position:
               
chr6:3978596-3978808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
255-536
               

               
Cow position:
               
chr6:50445695-50445987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr6:389239-388941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 37
               

               
Conread position:
               
256-439
               

               
Cow position:
               
chr6:54288139-54287954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
257-424
               

               
Cow position:
               
chr6:46998072-46998249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
257-504
               

               
Cow position:
               
chr6:38234026-38233787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
258-447
               

               
Cow position:
               
chr6:57299080-57298890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
258-462
               

               
Cow position:
               
chr6:18961450-18961654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
53, 194
               

               
Conread position:
               
258-466
               

               
Cow position:
               
chr6:5445688-5445482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
258-466
               

               
Cow position:
               
chr6:47989237-47989044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
259-457
               

               
Cow position:
               
chr6:34076093-34075882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
259-562
               

               
Cow position:
               
chr6:64449455-64449141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 280
               

               
Conread position:
               
260-452
               

               
Cow position:
               
chr6:53731588-53731390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
260-466
               

               
Cow position:
               
chr6:40834407-40834614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
260-537
               

               
Cow position:
               
chr6:642502-642804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
264-452
               

               
Cow position:
               
chr6:19351098-19351285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
268-452
               

               
Cow position:
               
chr6:12630076-12629893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
132, 45
               

               
Conread position:
               
268-456
               

               
Cow position:
               
chr6:59109000-59108806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
268-466
               

               
Cow position:
               
chr6:61137430-61137230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
43, 131
               

               
Conread position:
               
268-538
               

               
Cow position:
               
chr6:53711170-53710890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
48, 130
               

               
Conread position:
               
268-543
               

               
Cow position:
               
chr6:16411246-16410962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
45, 243
               

               
Conread position:
               
268-543
               

               
Cow position:
               
chr6:47540586-47540292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
269-466
               

               
Cow position:
               
chr6:8187468-8187660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
269-574
               

               
Cow position:
               
chr6:28079846-28080165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
270-446
               

               
Cow position:
               
chr6:33150355-33150531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
270-452
               

               
Cow position:
               
chr6:49604729-49604551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
270-466
               

               
Cow position:
               
chr6:62479107-62479307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 163
               

               
Conread position:
               
270-530
               

               
Cow position:
               
chr6:13741754-13741474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
270-537
               

               
Cow position:
               
chr6:16738072-16737794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
270-538
               

               
Cow position:
               
chr6:5957975-5958244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
198, 88
               

               
Conread position:
               
270-544
               

               
Cow position:
               
chr6:25773332-25773618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
272-467
               

               
Cow position:
               
chr6:60456880-60456689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 91
               

               
Conread position:
               
275-524
               

               
Cow position:
               
chr6:5462010-5462264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
275-535
               

               
Cow position:
               
chr6:54294150-54293886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
276-524
               

               
Cow position:
               
chr6:48344380-48344112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
276-543
               

               
Cow position:
               
chr6:32335848-32335583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
277-518
               

               
Cow position:
               
chr6:18968734-18968981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
35, 129
               

               
Conread position:
               
277-525
               

               
Cow position:
               
chr6:1886620-1886882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
280-520
               

               
Cow position:
               
chr6:24515155-24515405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
280-592
               

               
Cow position:
               
chr6:1510634-1510329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 166
               

               
Conread position:
               
282-530
               

               
Cow position:
               
chr6:20230785-20231047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 218
               

               
Conread position:
               
284-467
               

               
Cow position:
               
chr6:357847-358036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
284-519
               

               
Cow position:
               
chr6:46400374-46400616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
293-459
               

               
Cow position:
               
chr6:61130447-61130616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
294-571
               

               
Cow position:
               
chr6:17345393-17345133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
297-536
               

               
Cow position:
               
chr6:47150818-47150551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 240
               

               
Conread position:
               
298-534
               

               
Cow position:
               
chr6:66431842-66431619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
164, 11
               

               
Conread position:
               
299-521
               

               
Cow position:
               
chr6:30786135-30786361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
309-452
               

               
Cow position:
               
chr6:52025640-52025785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
311-452
               

               
Cow position:
               
chr6:58364000-58364143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
313-434
               

               
Cow position:
               
chr6:56848908-56849030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
313-448
               

               
Cow position:
               
chr6:31814732-31814864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
313-466
               

               
Cow position:
               
chr6:33277050-33276896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
313-538
               

               
Cow position:
               
chr6:32915915-32916148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 223
               

               
Conread position:
               
313-591
               

               
Cow position:
               
chr6:14201708-14201419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
152, 15
               

               
Conread position:
               
314-536
               

               
Cow position:
               
chr6:9732836-9733059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
315-447
               

               
Cow position:
               
chr6:48806989-48807122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
316-466
               

               
Cow position:
               
chr6:32986993-32987139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 106
               

               
Conread position:
               
316-536
               

               
Cow position:
               
chr6:2013025-2012791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
6, 167
               

               
Conread position:
               
319-466
               

               
Cow position:
               
chr6:10332088-10332237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr6:32210626-32210856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
141, 193
               

               
Conread position:
               
319-546
               

               
Cow position:
               
chr6:61575611-61575367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
320-535
               

               
Cow position:
               
chr6:40264199-40264422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
81, 160
               

               
Conread position:
               
321-474
               

               
Cow position:
               
chr6:41823821-41823976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
322-538
               

               
Cow position:
               
chr6:24327142-24327363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
74, 54
               

               
Conread position:
               
322-543
               

               
Cow position:
               
chr6:66453798-66453567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
147, 26
               

               
Conread position:
               
323-524
               

               
Cow position:
               
chr6:34031660-34031452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
323-557
               

               
Cow position:
               
chr6:39994463-39994708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
145, 71
               

               
Conread position:
               
324-467
               

               
Cow position:
               
chr6:1890847-1890988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
324-474
               

               
Cow position:
               
chr6:58732309-58732464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
325-466
               

               
Cow position:
               
chr6:10605684-10605544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
325-466
               

               
Cow position:
               
chr6:50020533-50020389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
328-466
               

               
Cow position:
               
chr6:35471526-35471664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-466
               

               
Cow position:
               
chr6:46667094-46666961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
364-466
               

               
Cow position:
               
chr6:20329982-20329880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.