Cow genome map
| Conread name: | rpliv0115_k8.y1 |
| Conread position: | 1-358 |
| Cow position: | chr17:22589530-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 1-441 |
| Cow position: | chr17:22590033-22589594 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 2-393 |
| Cow position: | chr17:22552783-22552392 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 76 |
| Conread position: | 3-366 |
| Cow position: | chr17:22451975-22451612 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 187, 194 |
| Conread position: | 3-373 |
| Cow position: | chr17:22498821-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 3-384 |
| Cow position: | chr17:22551858-22551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 3-431 |
| Cow position: | chr17:22589864-22589436 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 242 |
| Conread position: | 3-433 |
| Cow position: | chr17:22589612-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-434 |
| Cow position: | chr17:22499325-22498894 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-434 |
| Cow position: | chr17:22551942-22551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 156 |
| Conread position: | 3-437 |
| Cow position: | chr17:22473488-22473922 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-437 |
| Cow position: | chr17:22553034-22552600 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 3-440 |
| Cow position: | chr17:22452227-22451790 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 3-440 |
| Cow position: | chr17:22499157-22498720 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-440 |
| Cow position: | chr17:22552278-22551841 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 161 |
| Conread position: | 3-440 |
| Cow position: | chr17:22552446-22552009 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 3-441 |
| Cow position: | chr17:22452143-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 164 |
| Conread position: | 3-441 |
| Cow position: | chr17:22452311-22451873 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 332 |
| Conread position: | 3-441 |
| Cow position: | chr17:22499073-22498635 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chr17:22552026-22551588 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 3-441 |
| Cow position: | chr17:22552110-22551672 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 150 |
| Conread position: | 3-441 |
| Cow position: | chr17:22552194-22551756 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 3-441 |
| Cow position: | chr17:22552866-22552428 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 3-441 |
| Cow position: | chr17:22589948-22589510 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-389 |
| Cow position: | chr17:22452058-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 4-437 |
| Cow position: | chr17:22590115-22589682 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 50 |
| Conread position: | 4-437 |
| Cow position: | chr17:22590283-22589850 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-440 |
| Cow position: | chr17:22552697-22552261 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 74 |
| Conread position: | 4-440 |
| Cow position: | chr17:22589779-22589343 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-440 |
| Cow position: | chr17:22590199-22589763 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-441 |
| Cow position: | chr17:22473405-22473842 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-441 |
| Cow position: | chr17:22552949-22552512 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 5-441 |
| Cow position: | chr17:22473322-22473758 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-441 |
| Cow position: | chr17:22589694-22589258 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 280 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 295, 328 |
| Conread position: | 6-441 |
| Cow position: | chr17:22473242-22473674 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 7-440 |
| Cow position: | chr17:22499237-22498804 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-441 |
| Cow position: | chr17:22452389-22451957 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 410 |
| Conread position: | 10-435 |
| Cow position: | chr17:22498982-22498557 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 222 |
| Conread position: | 10-440 |
| Cow position: | chr17:22552607-22552177 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 10-441 |
| Cow position: | chr17:22552355-22551924 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 68 |
| Conread position: | 19-441 |
| Cow position: | chr17:22499393-22498971 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-370 |
| Cow position: | chr17:22498883-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-437 |
| Cow position: | chr17:22590304-22589934 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-431 |
| Cow position: | chr17:22499424-22499065 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 81-437 |
| Cow position: | chr17:22452401-22452045 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 238 |
| Conread position: | 83-392 |
| Cow position: | chr17:22553122-22552813 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 153-441 |
| Cow position: | chr17:22499427-22499139 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 248-441 |
| Cow position: | chr17:22452402-22452209 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 149, 136 |
| Conread position: | 250-440 |
| Cow position: | chr17:22590289-22590099 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.