Cow genome map

Conread name: rpliv0115_k8.y1

Conread position: 1-440
Cow position: chr19:23649287-23649726 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 280
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 66

Conread position: 1-441
Cow position: chr19:23613754-23614193 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 2-264
Cow position: chr19:23614846-23615108 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 2-441
Cow position: chr19:14959583-14959153 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 280
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 249, 243

Conread position: 3-343
Cow position: chr19:23614763-23615103 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-348
Cow position: chr19:14940731-14941076 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-360
Cow position: chr19:23650129-23650486 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 63

Conread position: 3-364
Cow position: chr19:23597352-23597713 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 62

Conread position: 3-366
Cow position: chr19:20678442-20678802 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 0

Conread position: 3-378
Cow position: chr19:14959664-14959292 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 249
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 143, 13

Conread position: 3-391
Cow position: chr19:14948396-14948008 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 327

Conread position: 3-392
Cow position: chr19:20678022-20678411 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 151

Conread position: 3-394
Cow position: chr19:14916034-14916420 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 261
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 47, 62

Conread position: 3-395
Cow position: chr19:14960236-14959846 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 62

Conread position: 3-395
Cow position: chr19:20635394-20635002 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 327

Conread position: 3-422
Cow position: chr19:43570069-43569654 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 336

Conread position: 3-432
Cow position: chr19:14948479-14948051 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 75

Conread position: 3-437
Cow position: chr19:14960154-14959722 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 275

Conread position: 3-437
Cow position: chr19:23597100-23597534 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 3-440
Cow position: chr19:14940059-14940496 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-440
Cow position: chr19:14940143-14940580 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 62

Conread position: 3-440
Cow position: chr19:23596935-23597369 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 97

Conread position: 3-440
Cow position: chr19:23613587-23614024 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 63

Conread position: 3-440
Cow position: chr19:23613671-23614108 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-440
Cow position: chr19:23614091-23614528 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 318

Conread position: 3-440
Cow position: chr19:23614427-23614864 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 319

Conread position: 3-440
Cow position: chr19:23614595-23615032 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 154

Conread position: 3-440
Cow position: chr19:23649709-23650146 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 133

Conread position: 3-441
Cow position: chr19:14940311-14940749 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 325

Conread position: 3-441
Cow position: chr19:14940395-14940833 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 61

Conread position: 3-441
Cow position: chr19:14940479-14940917 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 62

Conread position: 3-441
Cow position: chr19:14960320-14959884 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 62

Conread position: 3-441
Cow position: chr19:14960404-14959968 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 3-441
Cow position: chr19:20635646-20635208 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 82

Conread position: 3-441
Cow position: chr19:20677518-20677956 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 327

Conread position: 3-441
Cow position: chr19:20678190-20678628 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 313

Conread position: 3-441
Cow position: chr19:23597019-23597454 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 14

Conread position: 3-441
Cow position: chr19:23613419-23613857 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-441
Cow position: chr19:23613923-23614361 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-441
Cow position: chr19:23614343-23614781 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 125

Conread position: 3-441
Cow position: chr19:23614511-23614949 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-441
Cow position: chr19:23649457-23649895 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-441
Cow position: chr19:23649625-23650063 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-441
Cow position: chr19:23649877-23650315 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 71

Conread position: 3-441
Cow position: chr19:43570237-43569799 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 66

Conread position: 4-392
Cow position: chr19:20677687-20678075 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 336

Conread position: 4-393
Cow position: chr19:20678275-20678664 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 319

Conread position: 4-395
Cow position: chr19:20677771-20678162 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 74

Conread position: 4-425
Cow position: chr19:14940648-14941069 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 81

Conread position: 4-431
Cow position: chr19:23597269-23597696 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 402

Conread position: 4-437
Cow position: chr19:14959254-14958827 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 4-437
Cow position: chr19:20635477-20635044 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-439
Cow position: chr19:23614008-23614443 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 402

Conread position: 4-439
Cow position: chr19:23650046-23650481 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-440
Cow position: chr19:20677855-20678291 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 65

Conread position: 4-441
Cow position: chr19:14940228-14940665 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 61

Conread position: 4-441
Cow position: chr19:14940564-14941001 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 69

Conread position: 4-441
Cow position: chr19:20677939-20678376 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 84

Conread position: 4-441
Cow position: chr19:20678359-20678793 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 84

Conread position: 4-441
Cow position: chr19:23614176-23614613 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-441
Cow position: chr19:43570152-43569717 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 0

Conread position: 5-441
Cow position: chr19:23614261-23614697 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-441
Cow position: chr19:23613506-23613941 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 144

Conread position: 7-391
Cow position: chr19:20677606-20677990 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 311

Conread position: 7-441
Cow position: chr19:23597188-23597622 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-441
Cow position: chr19:23649545-23649979 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 58

Conread position: 7-441
Cow position: chr19:23649797-23650231 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 58

Conread position: 9-440
Cow position: chr19:20677440-20677871 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-441
Cow position: chr19:23649967-23650399 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 148

Conread position: 10-432
Cow position: chr19:23614686-23615108 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 60

Conread position: 10-441
Cow position: chr19:20635555-20635124 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-441
Cow position: chr19:23613846-23614277 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-441
Cow position: chr19:14960477-14960052 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 55

Conread position: 16-436
Cow position: chr19:14939988-14940408 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-437
Cow position: chr19:23649389-23649807 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 266
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 42

Conread position: 19-440
Cow position: chr19:23613351-23613772 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 20

Conread position: 20-429
Cow position: chr19:43570459-43570063 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 46, 11

Conread position: 36-441
Cow position: chr19:14959306-14958907 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 71-441
Cow position: chr19:14939960-14940329 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 73-441
Cow position: chr19:14959678-14959312 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 342, 27

Conread position: 75-437
Cow position: chr19:14915857-14916215 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 227
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 42, 58

Conread position: 78-440
Cow position: chr19:43570246-43569884 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 88-440
Cow position: chr19:20677435-20677787 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 90-405
Cow position: chr19:14915952-14916266 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 62, 16

Conread position: 96-440
Cow position: chr19:20677359-20677703 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 213
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 48

Conread position: 97-441
Cow position: chr19:14948469-14948126 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 220
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 65, 0

Conread position: 103-441
Cow position: chr19:23613351-23613689 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 299

Conread position: 167-441
Cow position: chr19:43570398-43570135 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 70, 5

Show alignments to all cow chromosomes.