Cow genome map
| Conread name: | rpliv0115_k8.y1 |
| Conread position: | 3-349 |
| Cow position: | chr28:7757988-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 226 |
| Conread position: | 3-358 |
| Cow position: | chr28:9253255-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 143 |
| Conread position: | 3-388 |
| Cow position: | chr28:11333565-11333180 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 3-392 |
| Cow position: | chr28:9290320-9290707 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-392 |
| Cow position: | chr28:9299289-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 3-406 |
| Cow position: | chr28:34679574-34679170 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 248, 28 |
| Conread position: | 3-431 |
| Cow position: | chr28:7757904-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 3-434 |
| Cow position: | chr28:7810257-7810670 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 3-435 |
| Cow position: | chr28:7758392-7758823 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 317 |
| Conread position: | 3-440 |
| Cow position: | chr28:7757484-7757921 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 3-440 |
| Cow position: | chr28:11334153-11333716 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 151 |
| Conread position: | 3-441 |
| Cow position: | chr28:7757400-7757838 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 3-441 |
| Cow position: | chr28:7757652-7758090 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 3-441 |
| Cow position: | chr28:7757736-7758174 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 150 |
| Conread position: | 3-441 |
| Cow position: | chr28:7757820-7758258 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 3-441 |
| Cow position: | chr28:7810332-7810761 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 197 |
| Conread position: | 3-441 |
| Cow position: | chr28:9252918-9253357 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 3-441 |
| Cow position: | chr28:9253087-9253525 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 3-441 |
| Cow position: | chr28:9289985-9290421 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 3-441 |
| Cow position: | chr28:9290156-9290588 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 58 |
| Conread position: | 3-441 |
| Cow position: | chr28:11333985-11333547 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 3-441 |
| Cow position: | chr28:11334069-11333631 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 3-441 |
| Cow position: | chr28:34673423-34673861 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 4-291 |
| Cow position: | chr28:7810660-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 4-431 |
| Cow position: | chr28:11333816-11333395 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 128, 135 |
| Conread position: | 4-441 |
| Cow position: | chr28:9253004-9253441 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 5-392 |
| Cow position: | chr28:34673509-34673896 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 5-395 |
| Cow position: | chr28:34696150-34696540 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 5-434 |
| Cow position: | chr28:9253173-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 5-435 |
| Cow position: | chr28:11333899-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 295, 312 |
| Conread position: | 7-335 |
| Cow position: | chr28:33210300-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 8-441 |
| Cow position: | chr28:9298556-9298987 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 10-374 |
| Cow position: | chr28:7810582-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 143 |
| Conread position: | 10-387 |
| Cow position: | chr28:9298807-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 7, 60 |
| Conread position: | 10-411 |
| Cow position: | chr28:34695903-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 10-438 |
| Cow position: | chr28:7757575-7758003 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 143 |
| Conread position: | 10-441 |
| Cow position: | chr28:34696071-34696502 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 11-441 |
| Cow position: | chr28:9289910-9290338 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 140, 57 |
| Conread position: | 16-361 |
| Cow position: | chr28:9299218-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 18-395 |
| Cow position: | chr28:33210227-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 19-440 |
| Cow position: | chr28:7758324-7758745 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 127 |
| Conread position: | 21-437 |
| Cow position: | chr28:7757334-7757750 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 40-441 |
| Cow position: | chr28:7810528-7810929 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 280 |
| Conread position: | 66-436 |
| Cow position: | chr28:34679595-34679224 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 101, 49 |
| Conread position: | 67-441 |
| Cow position: | chr28:9299188-9299559 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 94-441 |
| Cow position: | chr28:11334146-11333799 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 127, 144 |
| Conread position: | 102-437 |
| Cow position: | chr28:33210227-33210562 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 116, 126 |
| Conread position: | 103-441 |
| Cow position: | chr28:7758324-7758662 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-441 |
| Cow position: | chr28:34673364-34673693 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 153-441 |
| Cow position: | chr28:11334171-11333883 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 152, 163 |
| Conread position: | 208-441 |
| Cow position: | chr28:7810285-7810518 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-441 |
| Cow position: | chr28:34679594-34679390 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.