Cow genome map
| Conread name: | rpliv0115_k8.y1 |
| Conread position: | 3-276 |
| Cow position: | chr7:3180605-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 214, 192 |
| Conread position: | 3-363 |
| Cow position: | chr7:1014257-1014617 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 3-392 |
| Cow position: | chr7:1015091-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 317 |
| Conread position: | 3-393 |
| Cow position: | chr7:1438317-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 130, 151 |
| Conread position: | 3-393 |
| Cow position: | chr7:1439454-1439845 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 3-393 |
| Cow position: | chr7:1439875-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 3-395 |
| Cow position: | chr7:8325137-8325529 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 3-395 |
| Cow position: | chr7:18390314-18390706 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 317 |
| Conread position: | 3-411 |
| Cow position: | chr7:42878620-42878211 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 3-414 |
| Cow position: | chr7:18390398-18390809 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 3-439 |
| Cow position: | chr7:11600867-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 0 |
| Conread position: | 3-440 |
| Cow position: | chr7:1014671-1015108 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-440 |
| Cow position: | chr7:3179933-3180370 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 147 |
| Conread position: | 3-440 |
| Cow position: | chr7:3180269-3180706 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-440 |
| Cow position: | chr7:8277328-8277765 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 298, 321 |
| Conread position: | 3-440 |
| Cow position: | chr7:11600951-11600514 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-440 |
| Cow position: | chr7:42878956-42878519 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 3-441 |
| Cow position: | chr7:1014341-1014773 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 0 |
| Conread position: | 3-441 |
| Cow position: | chr7:1014755-1015193 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 3-441 |
| Cow position: | chr7:1439792-1440228 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-441 |
| Cow position: | chr7:3179765-3180203 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 315 |
| Conread position: | 3-441 |
| Cow position: | chr7:3179849-3180287 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chr7:8325221-8325659 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 55 |
| Conread position: | 3-441 |
| Cow position: | chr7:8325473-8325911 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 3-441 |
| Cow position: | chr7:11601035-11600597 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 381 |
| Conread position: | 3-441 |
| Cow position: | chr7:11601203-11600765 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chr7:18390230-18390668 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 3-441 |
| Cow position: | chr7:42879040-42878602 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 3-441 |
| Cow position: | chr7:42879124-42878686 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 4-228 |
| Cow position: | chr7:11434502-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 4-357 |
| Cow position: | chr7:8325810-8326167 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 54 |
| Conread position: | 4-395 |
| Cow position: | chr7:8243707-8244095 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 145 |
| Conread position: | 4-395 |
| Cow position: | chr7:8325642-8326033 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 231 |
| Conread position: | 4-395 |
| Cow position: | chr7:11434663-11434279 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 4-411 |
| Cow position: | chr7:8277413-8277820 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 241, 230 |
| Conread position: | 4-437 |
| Cow position: | chr7:8277749-8278182 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 224 |
| Conread position: | 4-437 |
| Cow position: | chr7:18390147-18390580 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-440 |
| Cow position: | chr7:1014840-1015276 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-440 |
| Cow position: | chr7:3180354-3180790 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-440 |
| Cow position: | chr7:11601118-11600682 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-440 |
| Cow position: | chr7:42878787-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 400 |
| Conread position: | 4-441 |
| Cow position: | chr7:3180102-3180539 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-441 |
| Cow position: | chr7:3180186-3180623 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-441 |
| Cow position: | chr7:3180438-3180874 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 366 |
| Conread position: | 4-441 |
| Cow position: | chr7:8242868-8243305 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 79, 61 |
| Conread position: | 4-441 |
| Cow position: | chr7:8243036-8243472 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 74, 91 |
| Conread position: | 4-441 |
| Cow position: | chr7:8243455-8243892 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 152, 139 |
| Conread position: | 4-441 |
| Cow position: | chr7:8243623-8244058 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 327 |
| Conread position: | 4-441 |
| Cow position: | chr7:8278253-8278682 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 64 |
| Conread position: | 4-441 |
| Cow position: | chr7:8324970-8325407 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 54 |
| Conread position: | 4-441 |
| Cow position: | chr7:8325054-8325491 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 4-441 |
| Cow position: | chr7:8325390-8325827 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 55 |
| Conread position: | 4-441 |
| Cow position: | chr7:18390063-18390500 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-441 |
| Cow position: | chr7:42878871-42878434 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 5-392 |
| Cow position: | chr7:8324887-8325274 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 56 |
| Conread position: | 5-441 |
| Cow position: | chr7:1015009-1015445 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 399 |
| Conread position: | 5-441 |
| Cow position: | chr7:3179683-3180119 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 5-441 |
| Cow position: | chr7:3180019-3180455 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 5-441 |
| Cow position: | chr7:42879206-42878770 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 6-433 |
| Cow position: | chr7:42878701-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 314 |
| Conread position: | 6-440 |
| Cow position: | chr7:1014926-1015360 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-441 |
| Cow position: | chr7:8243290-8243724 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 8-441 |
| Cow position: | chr7:42879287-42878854 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 151 |
| Conread position: | 9-392 |
| Cow position: | chr7:8325563-8325946 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 10-390 |
| Cow position: | chr7:8277671-8278051 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 324 |
| Conread position: | 10-392 |
| Cow position: | chr7:8325732-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 62 |
| Conread position: | 10-395 |
| Cow position: | chr7:8278091-8278474 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 11-440 |
| Cow position: | chr7:11434824-11434402 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 157, 145 |
| Conread position: | 16-395 |
| Cow position: | chr7:8243383-8243762 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 16-441 |
| Cow position: | chr7:8277257-8277682 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 19-394 |
| Cow position: | chr7:8324817-8325192 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 20-440 |
| Cow position: | chr7:18389995-18390415 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 296 |
| Conread position: | 20-441 |
| Cow position: | chr7:8277597-8278018 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 24-392 |
| Cow position: | chr7:8242804-8243172 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 33-441 |
| Cow position: | chr7:8277526-8277934 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 34-433 |
| Cow position: | chr7:1438178-1438579 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 52-435 |
| Cow position: | chr7:1014223-1014605 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 70-441 |
| Cow position: | chr7:1014654-1015025 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-441 |
| Cow position: | chr7:11601213-11600849 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 339 |
| Conread position: | 105-440 |
| Cow position: | chr7:8324735-8325070 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 106-441 |
| Cow position: | chr7:42879442-42879106 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 96 |
| Conread position: | 155-440 |
| Cow position: | chr7:42879308-42879023 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 168-392 |
| Cow position: | chr7:1439451-1439673 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 171-436 |
| Cow position: | chr7:1014257-1014522 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 189-441 |
| Cow position: | chr7:8324735-8324987 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 47 |
Show alignments to all cow chromosomes.