Cow genome map
| Conread name: | rpliv0115_k8.y1 |
| Conread position: | 1-347 |
| Cow position: | chr8:6957930-6957587 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 156, 141 |
| Conread position: | 1-440 |
| Cow position: | chr8:55580888-55581327 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-441 |
| Cow position: | chr8:45201337-45201776 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 3-226 |
| Cow position: | chr8:46817121-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-302 |
| Cow position: | chr8:45201674-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 3-345 |
| Cow position: | chr8:48406554-48406204 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 227, 238 |
| Conread position: | 3-373 |
| Cow position: | chr8:45201758-45202120 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 289, 244 |
| Conread position: | 3-378 |
| Cow position: | chr8:48407142-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-382 |
| Cow position: | chr8:55581394-55581773 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 331, 325 |
| Conread position: | 3-431 |
| Cow position: | chr8:55581310-55581738 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-435 |
| Cow position: | chr8:46816869-46817301 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 225 |
| Conread position: | 3-437 |
| Cow position: | chr8:55581226-55581660 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 3-440 |
| Cow position: | chr8:45201086-45201523 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 310 |
| Conread position: | 3-440 |
| Cow position: | chr8:45201170-45201607 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 314 |
| Conread position: | 3-440 |
| Cow position: | chr8:46816197-46816634 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 401 |
| Conread position: | 3-440 |
| Cow position: | chr8:48406806-48406369 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 3-440 |
| Cow position: | chr8:48407310-48406873 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 137 |
| Conread position: | 3-440 |
| Cow position: | chr8:48407394-48406957 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 3-441 |
| Cow position: | chr8:45201002-45201440 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 3-441 |
| Cow position: | chr8:46815942-46816383 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 3-441 |
| Cow position: | chr8:46816113-46816551 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chr8:46816365-46816803 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 225 |
| Conread position: | 3-441 |
| Cow position: | chr8:46816701-46817139 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 252 |
| Conread position: | 3-441 |
| Cow position: | chr8:48406974-48406536 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 3-441 |
| Cow position: | chr8:48407226-48406788 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chr8:48407478-48407040 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 156 |
| Conread position: | 4-357 |
| Cow position: | chr8:46817038-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 4-387 |
| Cow position: | chr8:45201591-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 4-435 |
| Cow position: | chr8:48406637-48406197 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 4-437 |
| Cow position: | chr8:45201507-45201940 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 4-439 |
| Cow position: | chr8:55581059-55581494 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-441 |
| Cow position: | chr8:45201255-45201692 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 141 |
| Conread position: | 4-441 |
| Cow position: | chr8:45201423-45201860 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 149 |
| Conread position: | 4-441 |
| Cow position: | chr8:46816618-46817055 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 5-440 |
| Cow position: | chr8:55580976-55581411 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 312 |
| Conread position: | 5-441 |
| Cow position: | chr8:46816283-46816719 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 5-441 |
| Cow position: | chr8:55581144-55581580 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-432 |
| Cow position: | chr8:6958009-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 6-441 |
| Cow position: | chr8:46816452-46816887 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 146 |
| Conread position: | 6-441 |
| Cow position: | chr8:46816788-46817223 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 314 |
| Conread position: | 9-394 |
| Cow position: | chr8:46816959-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 143 |
| Conread position: | 9-441 |
| Cow position: | chr8:46816035-46816467 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 219 |
| Conread position: | 10-440 |
| Cow position: | chr8:48407555-48407125 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 136 |
| Conread position: | 14-441 |
| Cow position: | chr8:48407635-48407208 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 312 |
| Conread position: | 19-432 |
| Cow position: | chr8:48406706-48406293 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 388 |
| Conread position: | 21-440 |
| Cow position: | chr8:45200936-45201355 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 132 |
| Conread position: | 32-441 |
| Cow position: | chr8:55580835-55581244 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-440 |
| Cow position: | chr8:55580752-55581159 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 40-388 |
| Cow position: | chr8:6958059-6957713 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 276 |
| Conread position: | 40-441 |
| Cow position: | chr8:45200787-45201188 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 150, 143 |
| Conread position: | 105-441 |
| Cow position: | chr8:45200936-45201272 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-441 |
| Cow position: | chr8:6958060-6957743 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 279, 271 |
Show alignments to all cow chromosomes.