Cow genome map
| Conread name: | rpliv0115_k8.y1 |
| Conread position: | 3-277 |
| Cow position: | chrX:25324511-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-289 |
| Cow position: | chrX:29044940-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 147, 143 |
| Conread position: | 3-296 |
| Cow position: | chrX:25310294-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 286, 0 |
| Conread position: | 3-303 |
| Cow position: | chrX:29045675-29045375 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 3-434 |
| Cow position: | chrX:25324763-25324332 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-440 |
| Cow position: | chrX:25310042-25310479 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 237 |
| Conread position: | 3-440 |
| Cow position: | chrX:25325183-25324746 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 317 |
| Conread position: | 3-440 |
| Cow position: | chrX:25325519-25325082 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-440 |
| Cow position: | chrX:25325687-25325250 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 3-441 |
| Cow position: | chrX:25309790-25310228 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chrX:25309958-25310396 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 3-441 |
| Cow position: | chrX:25324931-25324493 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 317 |
| Conread position: | 3-441 |
| Cow position: | chrX:25325015-25324577 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chrX:25325267-25324829 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-441 |
| Cow position: | chrX:25325435-25324997 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 3-441 |
| Cow position: | chrX:29045192-29044754 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 150 |
| Conread position: | 4-373 |
| Cow position: | chrX:29045023-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-380 |
| Cow position: | chrX:25310211-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 4-386 |
| Cow position: | chrX:29045758-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 142, 149 |
| Conread position: | 4-436 |
| Cow position: | chrX:25324678-25324246 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 4-440 |
| Cow position: | chrX:29045107-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 4-441 |
| Cow position: | chrX:25309707-25310144 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 4-441 |
| Cow position: | chrX:25325098-25324661 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 4-441 |
| Cow position: | chrX:29045356-29044922 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 5-441 |
| Cow position: | chrX:25310128-25310564 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 151 |
| Conread position: | 6-361 |
| Cow position: | chrX:25324592-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-393 |
| Cow position: | chrX:12627676-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 6-440 |
| Cow position: | chrX:29045273-29044839 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 6-441 |
| Cow position: | chrX:25325348-25324913 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-441 |
| Cow position: | chrX:25325768-25325333 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 7-393 |
| Cow position: | chrX:13826624-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 328, 322 |
| Conread position: | 8-440 |
| Cow position: | chrX:25325598-25325166 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 221 |
| Conread position: | 9-427 |
| Cow position: | chrX:29045837-29045419 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 270 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 9-440 |
| Cow position: | chrX:12627429-12627858 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 9-440 |
| Cow position: | chrX:25324841-25324410 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-395 |
| Cow position: | chrX:12627513-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 19-441 |
| Cow position: | chrX:13826948-13826526 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 79-440 |
| Cow position: | chrX:25325779-25325418 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 81-434 |
| Cow position: | chrX:12627333-12627684 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 87-441 |
| Cow position: | chrX:25309706-25310060 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 177-440 |
| Cow position: | chrX:29045837-29045574 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 220, 227 |
| Conread position: | 217-441 |
| Cow position: | chrX:25309669-25309892 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.