Cow genome map

Conread name: rpliv0117_i12.y1

Conread position: 1-232
Cow position: chr1:16117162-16117385 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 106

Conread position: 1-232
Cow position: chr1:72085728-72085947 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 55, 101

Conread position: 4-232
Cow position: chr1:82566326-82566541 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 52, 8

Conread position: 4-232
Cow position: chr1:86594075-86593860 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 52, 9

Conread position: 5-232
Cow position: chr1:4210344-4210559 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:5300861-5300646 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:17438836-17438620 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 19, 100

Conread position: 5-232
Cow position: chr1:26585355-26585568 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 91

Conread position: 5-232
Cow position: chr1:28175977-28175762 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:28713268-28713483 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:29036550-29036762 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 51, 34

Conread position: 5-232
Cow position: chr1:29364636-29364851 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:33853510-33853725 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:39546006-39546221 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 51, 72

Conread position: 5-232
Cow position: chr1:40057342-40057557 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:40682509-40682294 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:53310473-53310683 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:56620464-56620679 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:58198164-58197941 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:65570873-65570658 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:67000687-67000472 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:73439966-73439751 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:77746971-77747185 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr1:82654876-82655090 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr1:90973179-90973393 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 90

Conread position: 5-232
Cow position: chr1:100508976-100509195 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 51, 117

Conread position: 5-233
Cow position: chr1:17034357-17034148 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 6-233
Cow position: chr1:89493989-89493778 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 50, 98

Conread position: 9-230
Cow position: chr1:74284441-74284234 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 47, 7

Conread position: 9-230
Cow position: chr1:88675716-88675921 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 95

Conread position: 9-231
Cow position: chr1:97225336-97225126 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:3933021-3932803 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:8827294-8827505 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 48, 96

Conread position: 9-232
Cow position: chr1:11856041-11855837 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 61, 92

Conread position: 9-232
Cow position: chr1:13252287-13252076 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 45, 93

Conread position: 9-232
Cow position: chr1:18194855-18195065 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 47, 86

Conread position: 9-232
Cow position: chr1:19184072-19183864 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 90

Conread position: 9-232
Cow position: chr1:30693312-30693522 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:33549450-33549242 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 47, 98

Conread position: 9-232
Cow position: chr1:33898497-33898708 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:34694927-34695139 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 96

Conread position: 9-232
Cow position: chr1:38477544-38477755 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:40577161-40577376 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 99

Conread position: 9-232
Cow position: chr1:40966164-40965956 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:52336727-52336516 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 43, 88

Conread position: 9-232
Cow position: chr1:52357018-52356807 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:55329163-55328956 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 181
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 47, 17

Conread position: 9-232
Cow position: chr1:55778813-55779024 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:57570067-57570279 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 98

Conread position: 9-232
Cow position: chr1:66487459-66487670 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:67910789-67911002 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 93

Conread position: 9-232
Cow position: chr1:72184634-72184423 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:73065106-73064895 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:76094629-76094417 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:76619238-76619030 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:77104801-77104587 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:81778689-81778898 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 47, 64

Conread position: 9-232
Cow position: chr1:82862748-82862959 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:88133009-88133220 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr1:93856752-93856960 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr1:98094607-98094818 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 180
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 93

Conread position: 9-232
Cow position: chr1:100593987-100593777 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 63

Conread position: 9-232
Cow position: chr1:102432792-102432581 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 47, 90

Conread position: 9-232
Cow position: chr1:102551223-102551446 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 47, 95

Conread position: 9-233
Cow position: chr1:26516138-26515931 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 9-233
Cow position: chr1:33714321-33714531 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 47, 71

Conread position: 9-234
Cow position: chr1:86704384-86704593 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 43, 95

Conread position: 9-262
Cow position: chr1:23657403-23657645 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 47, 62

Conread position: 9-462
Cow position: chr1:89768293-89767854 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 66

Conread position: 10-232
Cow position: chr1:25054519-25054726 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 46, 94

Conread position: 10-232
Cow position: chr1:62803641-62803431 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 46, 95

Conread position: 10-232
Cow position: chr1:79454736-79454526 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 5, 62

Conread position: 10-232
Cow position: chr1:94661913-94662120 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 46, 28

Conread position: 11-232
Cow position: chr1:6198061-6197853 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 45, 24

Conread position: 11-232
Cow position: chr1:8555923-8556130 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 45, 84

Conread position: 11-232
Cow position: chr1:24441833-24441601 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 71

Conread position: 11-232
Cow position: chr1:91672648-91672439 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 179
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 45, 94

Conread position: 12-232
Cow position: chr1:21115166-21114959 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 40, 93

Conread position: 15-232
Cow position: chr1:69025744-69025539 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 173
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 41, 90

Conread position: 17-232
Cow position: chr1:79112693-79112895 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 39, 75

Conread position: 20-232
Cow position: chr1:89110860-89111060 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 85

Conread position: 23-232
Cow position: chr1:5504183-5504380 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 33, 81

Conread position: 28-232
Cow position: chr1:61343456-61343269 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 25, 77

Conread position: 43-232
Cow position: chr1:29534193-29534016 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 13, 62

Conread position: 60-252
Cow position: chr1:53366209-53366388 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 174, 44

Conread position: 63-232
Cow position: chr1:14530182-14530015 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 55, 25

Conread position: 118-232
Cow position: chr1:63603456-63603345 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 119-232
Cow position: chr1:30104233-30104120 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr1:89124704-89124817 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr1:99988832-99988945 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 120-230
Cow position: chr1:27990096-27989986 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 120-232
Cow position: chr1:40533702-40533597 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 125-232
Cow position: chr1:86024129-86024022 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 126-232
Cow position: chr1:84442657-84442552 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 126-233
Cow position: chr1:32757316-32757423 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 128-232
Cow position: chr1:30716347-30716243 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 90
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 133-232
Cow position: chr1:7826313-7826412 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 87
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 137-232
Cow position: chr1:67832790-67832695 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 143-232
Cow position: chr1:70389185-70389096 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 79
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 151-232
Cow position: chr1:61025048-61025129 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 75
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.