Cow genome map
| Conread name: | rpliv0117_i12.y1 |
| Conread position: | 1-232 |
| Cow position: | chr10:54127803-54128020 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 4-232 |
| Cow position: | chr10:40348404-40348189 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 5-232 |
| Cow position: | chr10:279107-278885 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 5-232 |
| Cow position: | chr10:6286999-6287214 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr10:12546237-12546452 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr10:13851396-13851611 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr10:15488797-15489009 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 5-232 |
| Cow position: | chr10:17958334-17958549 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr10:19142358-19142144 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr10:19493702-19493487 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr10:23848215-23848430 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr10:26293236-26293021 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr10:35825084-35824876 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 5-232 |
| Cow position: | chr10:39210013-39210228 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr10:39814142-39813927 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr10:41879190-41879404 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 5-232 |
| Cow position: | chr10:48375194-48374979 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr10:52827359-52827147 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 5-232 |
| Cow position: | chr10:53173068-53172853 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr10:54929713-54929508 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 167, 57 |
| Conread position: | 5-232 |
| Cow position: | chr10:55095523-55095735 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 5-233 |
| Cow position: | chr10:24975579-24975366 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-233 |
| Cow position: | chr10:41654556-41654765 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 5-268 |
| Cow position: | chr10:22343722-22343973 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 9-230 |
| Cow position: | chr10:42633171-42633378 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 48, 95 |
| Conread position: | 9-231 |
| Cow position: | chr10:41386728-41386514 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 9-232 |
| Cow position: | chr10:1379757-1379966 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr10:2118770-2118559 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr10:11109413-11109202 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 9-232 |
| Cow position: | chr10:14333585-14333377 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 9-232 |
| Cow position: | chr10:15621127-15620915 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 87 |
| Conread position: | 9-232 |
| Cow position: | chr10:21516754-21516545 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 9-232 |
| Cow position: | chr10:22619150-22618944 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 9-232 |
| Cow position: | chr10:25340412-25340621 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 9-232 |
| Cow position: | chr10:32280103-32280314 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr10:37772149-37772357 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr10:38842420-38842631 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 9-232 |
| Cow position: | chr10:57987443-57987235 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 10-231 |
| Cow position: | chr10:41140753-41140548 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 10-232 |
| Cow position: | chr10:15831811-15831604 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 10-232 |
| Cow position: | chr10:24295020-24294814 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 21-232 |
| Cow position: | chr10:31855748-31855947 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 32-232 |
| Cow position: | chr10:10584412-10584599 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 51-232 |
| Cow position: | chr10:51085804-51085971 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 118-232 |
| Cow position: | chr10:2243315-2243426 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 118-232 |
| Cow position: | chr10:30683138-30683024 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 119-232 |
| Cow position: | chr10:7279743-7279634 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 119-232 |
| Cow position: | chr10:23409752-23409865 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr10:28031574-28031461 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr10:42743952-42744064 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 119-232 |
| Cow position: | chr10:68097261-68097148 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-231 |
| Cow position: | chr10:8324776-8324665 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-232 |
| Cow position: | chr10:8458290-8458402 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-232 |
| Cow position: | chr10:36513751-36513863 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-232 |
| Cow position: | chr10:51557753-51557864 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-266 |
| Cow position: | chr10:47156077-47156220 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 127-232 |
| Cow position: | chr10:55010067-55010172 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-232 |
| Cow position: | chr10:33868814-33868719 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-232 |
| Cow position: | chr10:5868183-5868096 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 78 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-232 |
| Cow position: | chr10:8681014-8681088 (view UCSC Genome Browser custom track) |
| Alignm length: | 75 |
| Alignm identity: | 70 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.