Cow genome map
| Conread name: | rpliv0117_i12.y1 |
| Conread position: | 1-232 |
| Cow position: | chr11:15994056-15994268 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 4-232 |
| Cow position: | chr11:4268256-4268043 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 4-232 |
| Cow position: | chr11:30121747-30121543 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 5-232 |
| Cow position: | chr11:2349840-2350055 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 5-232 |
| Cow position: | chr11:3494872-3495087 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:8265410-8265623 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 5-232 |
| Cow position: | chr11:8445232-8445017 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:15987144-15987359 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:27726005-27725790 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:28124388-28124617 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 113 |
| Conread position: | 5-232 |
| Cow position: | chr11:30254122-30254333 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:32453949-32454164 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:56918098-56917884 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 5-232 |
| Cow position: | chr11:63391588-63391373 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:67446352-67446137 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:67452542-67452757 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr11:75392140-75392355 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr11:78792177-78791962 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr11:84966005-84966220 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 7-232 |
| Cow position: | chr11:12951256-12951044 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 8-232 |
| Cow position: | chr11:12095685-12095896 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 9-230 |
| Cow position: | chr11:66860584-66860376 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 9-232 |
| Cow position: | chr11:7118309-7118516 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 9-232 |
| Cow position: | chr11:9155283-9155077 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 9-232 |
| Cow position: | chr11:10850015-10850223 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 9-232 |
| Cow position: | chr11:11590860-11591071 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 9-232 |
| Cow position: | chr11:14261337-14261126 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr11:19100589-19100379 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 9-232 |
| Cow position: | chr11:23881902-23882113 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 9-232 |
| Cow position: | chr11:24395211-24395418 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 9-232 |
| Cow position: | chr11:27658857-27659065 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 47, 89 |
| Conread position: | 9-232 |
| Cow position: | chr11:27937027-27937236 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 9-232 |
| Cow position: | chr11:32078888-32078677 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr11:33602736-33602527 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 9-232 |
| Cow position: | chr11:41168803-41168592 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr11:44253970-44254184 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 9-232 |
| Cow position: | chr11:44581336-44581128 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr11:47758369-47758157 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 9-232 |
| Cow position: | chr11:71331397-71331605 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 9-233 |
| Cow position: | chr11:4054403-4054194 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 9-462 |
| Cow position: | chr11:12318114-12317663 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 10-222 |
| Cow position: | chr11:42371714-42371913 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 10-232 |
| Cow position: | chr11:15126711-15126920 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 10-232 |
| Cow position: | chr11:53430129-53429919 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 95 |
| Conread position: | 11-232 |
| Cow position: | chr11:5483122-5483328 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 11-232 |
| Cow position: | chr11:12356499-12356291 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 45, 64 |
| Conread position: | 11-232 |
| Cow position: | chr11:26123020-26122815 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 11-232 |
| Cow position: | chr11:45106746-45106958 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 14-219 |
| Cow position: | chr11:27056658-27056462 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 194, 88 |
| Conread position: | 15-232 |
| Cow position: | chr11:41744458-41744663 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 15-232 |
| Cow position: | chr11:49172600-49172398 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 15-232 |
| Cow position: | chr11:52845442-52845647 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 21-232 |
| Cow position: | chr11:31928079-31928278 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 77 |
| Conread position: | 21-232 |
| Cow position: | chr11:44516043-44515844 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 23-232 |
| Cow position: | chr11:37280775-37280579 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 26-232 |
| Cow position: | chr11:67297097-67296905 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 51-232 |
| Cow position: | chr11:26069118-26068956 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 117-232 |
| Cow position: | chr11:35862640-35862525 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 118-232 |
| Cow position: | chr11:43512640-43512529 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 119-232 |
| Cow position: | chr11:7121974-7121861 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr11:47973862-47973749 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr11:75740477-75740588 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 120-233 |
| Cow position: | chr11:40774026-40773913 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-232 |
| Cow position: | chr11:39585726-39585619 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-232 |
| Cow position: | chr11:41422908-41422803 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-232 |
| Cow position: | chr11:25099156-25099067 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 80 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-232 |
| Cow position: | chr11:32478797-32478710 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-232 |
| Cow position: | chr11:50835590-50835510 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 74 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-232 |
| Cow position: | chr11:49013032-49012958 (view UCSC Genome Browser custom track) |
| Alignm length: | 75 |
| Alignm identity: | 70 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.