Cow genome map

Conread name: rpliv0117_i12.y1

Conread position: 1-233
Cow position: chr2:25744178-25744398 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 52, 104

Conread position: 3-232
Cow position: chr2:25022818-25023035 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 53, 101

Conread position: 4-230
Cow position: chr2:56754758-56754545 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 99

Conread position: 5-216
Cow position: chr2:52161142-52160946 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 82

Conread position: 5-232
Cow position: chr2:2086436-2086221 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:3622253-3622464 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 5-232
Cow position: chr2:4181393-4181178 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:4452092-4452307 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 99

Conread position: 5-232
Cow position: chr2:6005122-6004897 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 47, 83

Conread position: 5-232
Cow position: chr2:6640530-6640745 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:8747422-8747208 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chr2:9957345-9957130 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:9963345-9963130 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:29967707-29967922 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:34500693-34500478 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:42668978-42668766 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:43757916-43757701 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:46908726-46908510 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:47183405-47183190 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:48851525-48851310 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:49461090-49460875 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:53331525-53331740 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr2:53541663-53541878 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:54739209-54739424 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:57053290-57053505 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:57337682-57337896 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 180
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 98

Conread position: 5-232
Cow position: chr2:57937121-57937336 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:59412018-59411803 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:62730247-62730462 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr2:67189317-67189532 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 51, 100

Conread position: 5-255
Cow position: chr2:72791839-72791613 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 40

Conread position: 6-232
Cow position: chr2:53004475-53004261 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 50, 99

Conread position: 9-220
Cow position: chr2:62728547-62728745 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 47, 98

Conread position: 9-231
Cow position: chr2:21983025-21982818 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr2:280965-280754 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 90

Conread position: 9-232
Cow position: chr2:974643-974436 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 48, 96

Conread position: 9-232
Cow position: chr2:10467329-10467536 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 86

Conread position: 9-232
Cow position: chr2:12594703-12594914 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr2:19013087-19013297 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr2:28795570-28795781 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr2:32064319-32064112 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 94

Conread position: 9-232
Cow position: chr2:34562650-34562442 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr2:36048536-36048327 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr2:36276385-36276175 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 64, 88

Conread position: 9-232
Cow position: chr2:45212959-45212748 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr2:45937984-45937776 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 62

Conread position: 9-232
Cow position: chr2:46183808-46183598 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 94

Conread position: 9-232
Cow position: chr2:49462650-49462858 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 32

Conread position: 9-232
Cow position: chr2:52064486-52064696 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 47, 32

Conread position: 9-232
Cow position: chr2:65936497-65936286 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 96

Conread position: 9-232
Cow position: chr2:66596762-66596973 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 95

Conread position: 9-232
Cow position: chr2:78764377-78764593 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 36, 102

Conread position: 9-232
Cow position: chr2:80291037-80290826 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 41, 96

Conread position: 9-261
Cow position: chr2:6964383-6964632 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 9-261
Cow position: chr2:10731140-10730908 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 23

Conread position: 9-262
Cow position: chr2:16902120-16902360 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 47, 97

Conread position: 10-232
Cow position: chr2:169446-169237 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 46, 94

Conread position: 10-232
Cow position: chr2:60674096-60673886 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 95

Conread position: 11-232
Cow position: chr2:29217449-29217658 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 45, 94

Conread position: 11-232
Cow position: chr2:32640672-32640882 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 94

Conread position: 11-232
Cow position: chr2:39423660-39423869 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 93

Conread position: 11-232
Cow position: chr2:56264514-56264729 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 67

Conread position: 20-232
Cow position: chr2:72932348-72932145 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 84

Conread position: 22-232
Cow position: chr2:8120442-8120640 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 77

Conread position: 27-232
Cow position: chr2:8085647-8085842 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 80

Conread position: 27-232
Cow position: chr2:49629070-49629263 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 77

Conread position: 55-232
Cow position: chr2:12752808-12752971 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 106-232
Cow position: chr2:8106237-8106364 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 26

Conread position: 118-232
Cow position: chr2:26923249-26923363 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr2:2456675-2456562 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr2:2602514-2602624 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 119-232
Cow position: chr2:41047425-41047312 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 119-233
Cow position: chr2:67956474-67956587 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 119-266
Cow position: chr2:1434028-1433886 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 113, 0

Conread position: 120-226
Cow position: chr2:28652286-28652182 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 80

Conread position: 120-232
Cow position: chr2:49632617-49632729 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 121-230
Cow position: chr2:5996665-5996774 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 61

Conread position: 125-232
Cow position: chr2:31408512-31408405 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 126-232
Cow position: chr2:9909824-9909930 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.