Cow genome map

Conread name: rpliv0117_i12.y1

Conread position: 1-232
Cow position: chr3:49733668-49733889 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 9, 105

Conread position: 4-232
Cow position: chr3:45976604-45976820 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 98

Conread position: 5-231
Cow position: chr3:3982738-3982952 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 53, 90

Conread position: 5-231
Cow position: chr3:41208493-41208279 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:2870899-2871114 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:4288187-4288402 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr3:6323760-6323975 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chr3:6784512-6784727 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:7156608-7156393 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:11784441-11784226 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr3:13035792-13036007 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr3:13724612-13724398 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:16224996-16225204 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 34

Conread position: 5-232
Cow position: chr3:18113584-18113369 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:18861545-18861760 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 50, 99

Conread position: 5-232
Cow position: chr3:19799050-19798835 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chr3:22338024-22338239 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:27920552-27920767 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:28670192-28670406 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr3:30990142-30989927 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr3:32620939-32620724 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:40825501-40825715 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr3:46859182-46858967 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 99

Conread position: 5-232
Cow position: chr3:49003273-49003488 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr3:49563117-49563327 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 5-232
Cow position: chr3:49908909-49908695 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 98

Conread position: 5-232
Cow position: chr3:64026027-64025813 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chr3:64652769-64652984 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 50, 99

Conread position: 5-232
Cow position: chr3:66969777-66969562 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr3:68697865-68697650 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 70

Conread position: 5-232
Cow position: chr3:68871646-68871432 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 69

Conread position: 5-232
Cow position: chr3:68890466-68890254 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 97

Conread position: 5-232
Cow position: chr3:78025329-78025115 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chr3:83766355-83766570 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 8-232
Cow position: chr3:61675808-61676017 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 96

Conread position: 9-214
Cow position: chr3:37644399-37644591 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 17

Conread position: 9-216
Cow position: chr3:57741639-57741835 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 172
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 95

Conread position: 9-231
Cow position: chr3:24587137-24586927 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 94

Conread position: 9-232
Cow position: chr3:5952080-5951869 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 22

Conread position: 9-232
Cow position: chr3:18813619-18813830 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr3:21003928-21004139 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr3:23009501-23009709 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr3:23205772-23205561 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 53, 96

Conread position: 9-232
Cow position: chr3:24443988-24443777 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr3:36401705-36401916 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 50, 95

Conread position: 9-232
Cow position: chr3:56337845-56337634 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr3:66622325-66622533 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr3:69931727-69931516 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr3:72632179-72632385 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 86

Conread position: 9-232
Cow position: chr3:75039741-75039530 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 47, 96

Conread position: 9-249
Cow position: chr3:46751742-46751961 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 48, 23

Conread position: 9-263
Cow position: chr3:56147419-56147657 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 53, 66

Conread position: 10-230
Cow position: chr3:48239370-48239577 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 94

Conread position: 10-232
Cow position: chr3:3525153-3525363 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 46, 94

Conread position: 10-232
Cow position: chr3:46504678-46504885 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 46, 94

Conread position: 10-232
Cow position: chr3:53517693-53517913 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 42, 121

Conread position: 10-233
Cow position: chr3:31122035-31121824 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 84

Conread position: 11-232
Cow position: chr3:49135448-49135243 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 94

Conread position: 11-232
Cow position: chr3:49742571-49742781 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 7, 94

Conread position: 11-261
Cow position: chr3:42449223-42449453 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 93

Conread position: 14-232
Cow position: chr3:36862341-36862137 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 42, 57

Conread position: 15-232
Cow position: chr3:43191158-43190953 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 90

Conread position: 20-230
Cow position: chr3:36690079-36689878 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 36, 89

Conread position: 32-232
Cow position: chr3:34014471-34014659 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 70

Conread position: 43-232
Cow position: chr3:57996258-57996435 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 62

Conread position: 51-232
Cow position: chr3:24637588-24637753 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 118-232
Cow position: chr3:49998341-49998455 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr3:30616732-30616619 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr3:31020887-31021000 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr3:64691248-64691360 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 119-233
Cow position: chr3:64813239-64813128 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 120-232
Cow position: chr3:15415675-15415787 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 121-232
Cow position: chr3:74059683-74059794 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 95
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.