Cow genome map
| Conread name: | rpliv0117_i12.y1 |
| Conread position: | 1-232 |
| Cow position: | chr3:49733668-49733889 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 105 |
| Conread position: | 4-232 |
| Cow position: | chr3:45976604-45976820 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 98 |
| Conread position: | 5-231 |
| Cow position: | chr3:3982738-3982952 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 5-231 |
| Cow position: | chr3:41208493-41208279 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:2870899-2871114 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:4288187-4288402 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr3:6323760-6323975 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 5-232 |
| Cow position: | chr3:6784512-6784727 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:7156608-7156393 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:11784441-11784226 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr3:13035792-13036007 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr3:13724612-13724398 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:16224996-16225204 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 5-232 |
| Cow position: | chr3:18113584-18113369 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:18861545-18861760 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:19799050-19798835 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 5-232 |
| Cow position: | chr3:22338024-22338239 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:27920552-27920767 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:28670192-28670406 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr3:30990142-30989927 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr3:32620939-32620724 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:40825501-40825715 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr3:46859182-46858967 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:49003273-49003488 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr3:49563117-49563327 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 5-232 |
| Cow position: | chr3:49908909-49908695 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 98 |
| Conread position: | 5-232 |
| Cow position: | chr3:64026027-64025813 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 5-232 |
| Cow position: | chr3:64652769-64652984 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 50, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:66969777-66969562 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr3:68697865-68697650 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 5-232 |
| Cow position: | chr3:68871646-68871432 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 5-232 |
| Cow position: | chr3:68890466-68890254 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 5-232 |
| Cow position: | chr3:78025329-78025115 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 5-232 |
| Cow position: | chr3:83766355-83766570 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 8-232 |
| Cow position: | chr3:61675808-61676017 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 9-214 |
| Cow position: | chr3:37644399-37644591 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 9-216 |
| Cow position: | chr3:57741639-57741835 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 9-231 |
| Cow position: | chr3:24587137-24586927 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 9-232 |
| Cow position: | chr3:5952080-5951869 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 9-232 |
| Cow position: | chr3:18813619-18813830 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 9-232 |
| Cow position: | chr3:21003928-21004139 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 9-232 |
| Cow position: | chr3:23009501-23009709 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr3:23205772-23205561 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 9-232 |
| Cow position: | chr3:24443988-24443777 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr3:36401705-36401916 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 95 |
| Conread position: | 9-232 |
| Cow position: | chr3:56337845-56337634 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 9-232 |
| Cow position: | chr3:66622325-66622533 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr3:69931727-69931516 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr3:72632179-72632385 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 9-232 |
| Cow position: | chr3:75039741-75039530 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-249 |
| Cow position: | chr3:46751742-46751961 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 9-263 |
| Cow position: | chr3:56147419-56147657 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 10-230 |
| Cow position: | chr3:48239370-48239577 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 10-232 |
| Cow position: | chr3:3525153-3525363 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 10-232 |
| Cow position: | chr3:46504678-46504885 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 10-232 |
| Cow position: | chr3:53517693-53517913 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 10-233 |
| Cow position: | chr3:31122035-31121824 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 11-232 |
| Cow position: | chr3:49135448-49135243 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 11-232 |
| Cow position: | chr3:49742571-49742781 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 11-261 |
| Cow position: | chr3:42449223-42449453 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 14-232 |
| Cow position: | chr3:36862341-36862137 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 15-232 |
| Cow position: | chr3:43191158-43190953 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 20-230 |
| Cow position: | chr3:36690079-36689878 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 32-232 |
| Cow position: | chr3:34014471-34014659 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 43-232 |
| Cow position: | chr3:57996258-57996435 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 51-232 |
| Cow position: | chr3:24637588-24637753 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 118-232 |
| Cow position: | chr3:49998341-49998455 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr3:30616732-30616619 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr3:31020887-31021000 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr3:64691248-64691360 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 119-233 |
| Cow position: | chr3:64813239-64813128 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 120-232 |
| Cow position: | chr3:15415675-15415787 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-232 |
| Cow position: | chr3:74059683-74059794 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.