Cow genome map

Conread name: rpliv0117_i12.y1

Conread position: 5-216
Cow position: chr5:51745241-51745440 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 93

Conread position: 5-227
Cow position: chr5:27489963-27490167 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 33

Conread position: 5-232
Cow position: chr5:3502112-3501901 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 82

Conread position: 5-232
Cow position: chr5:4756166-4755952 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 80

Conread position: 5-232
Cow position: chr5:5925953-5925738 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 50, 99

Conread position: 5-232
Cow position: chr5:9056671-9056886 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr5:10514266-10514051 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chr5:11923118-11922903 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr5:12730702-12730487 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr5:24100659-24100874 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr5:26077191-26076977 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 51, 89

Conread position: 5-232
Cow position: chr5:27197068-27196857 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 80

Conread position: 5-232
Cow position: chr5:29031281-29031496 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr5:30567283-30567499 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 101

Conread position: 5-232
Cow position: chr5:41066190-41066405 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr5:42506770-42506985 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr5:46791859-46792074 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr5:49222489-49222273 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr5:54928903-54928688 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr5:58190746-58190531 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr5:58244810-58244597 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr5:59062652-59062867 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 5-233
Cow position: chr5:4683788-4683573 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 51, 80

Conread position: 5-234
Cow position: chr5:14878100-14877888 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 62

Conread position: 9-232
Cow position: chr5:280206-280417 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr5:6152875-6152666 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr5:7275845-7276056 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 49, 96

Conread position: 9-232
Cow position: chr5:10854802-10854593 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr5:12641426-12641217 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 29

Conread position: 9-232
Cow position: chr5:23830306-23830091 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr5:44710367-44710157 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 181
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 44, 62

Conread position: 9-232
Cow position: chr5:46736265-46736057 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 90

Conread position: 9-232
Cow position: chr5:48226557-48226347 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 90

Conread position: 9-232
Cow position: chr5:49520729-49520939 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr5:54859079-54858873 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 9-232
Cow position: chr5:57001516-57001726 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 90

Conread position: 9-232
Cow position: chr5:64779992-64779781 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 96

Conread position: 9-255
Cow position: chr5:55993424-55993193 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 47, 89

Conread position: 10-232
Cow position: chr5:4387248-4387447 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 46, 28

Conread position: 11-232
Cow position: chr5:2916451-2916652 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 45, 72

Conread position: 11-232
Cow position: chr5:23958310-23958101 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 178
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 45, 94

Conread position: 11-232
Cow position: chr5:24644844-24644635 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 45, 91

Conread position: 11-233
Cow position: chr5:10920861-10921069 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 94

Conread position: 14-225
Cow position: chr5:47469811-47470007 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 173
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 42, 24

Conread position: 17-232
Cow position: chr5:3788248-3788450 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 39, 70

Conread position: 26-232
Cow position: chr5:73486892-73486698 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 79

Conread position: 43-232
Cow position: chr5:56541465-56541288 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 13, 59

Conread position: 119-231
Cow position: chr5:18900092-18900201 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 119-232
Cow position: chr5:27550350-27550237 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr5:37379218-37379329 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 119-232
Cow position: chr5:57889302-57889189 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 99
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 121-231
Cow position: chr5:34525337-34525443 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 44

Conread position: 133-232
Cow position: chr5:18249184-18249283 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 134-232
Cow position: chr5:34583761-34583859 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 143-232
Cow position: chr5:71622166-71622077 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.