Cow genome map
| Conread name: | rpliv0117_i12.y1 |
| Conread position: | 1-232 |
| Cow position: | chr6:40864883-40864668 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 1-232 |
| Cow position: | chr6:51732227-51732443 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 4-232 |
| Cow position: | chr6:8537155-8536939 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 5-221 |
| Cow position: | chr6:16767689-16767485 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-230 |
| Cow position: | chr6:11723047-11722835 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 51, 68 |
| Conread position: | 5-232 |
| Cow position: | chr6:1408500-1408286 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr6:1820474-1820264 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:7139186-7138970 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:11870781-11870566 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 5-232 |
| Cow position: | chr6:13309232-13309020 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 5-232 |
| Cow position: | chr6:13757872-13758087 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:13849224-13849439 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr6:13978910-13979124 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr6:18913328-18913113 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr6:20351943-20351728 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:24625454-24625225 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 5-232 |
| Cow position: | chr6:28186687-28186472 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr6:33809786-33810001 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:35874562-35874348 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:40277221-40277436 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:40974334-40974549 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:45902739-45902524 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr6:53544247-53544462 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr6:55237841-55238056 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 5-232 |
| Cow position: | chr6:67552631-67552846 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-233 |
| Cow position: | chr6:39911475-39911690 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 6-232 |
| Cow position: | chr6:28489418-28489204 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 98 |
| Conread position: | 9-230 |
| Cow position: | chr6:50486646-50486435 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 9-231 |
| Cow position: | chr6:8759125-8758915 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-231 |
| Cow position: | chr6:30272738-30272527 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 9-232 |
| Cow position: | chr6:3887357-3887145 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 9-232 |
| Cow position: | chr6:24241443-24241652 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 9-232 |
| Cow position: | chr6:25216456-25216664 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr6:25791540-25791337 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 9-232 |
| Cow position: | chr6:38874503-38874297 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 9-232 |
| Cow position: | chr6:39332374-39332167 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 95 |
| Conread position: | 9-232 |
| Cow position: | chr6:41229598-41229806 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr6:43791426-43791218 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 9-232 |
| Cow position: | chr6:47041035-47040824 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr6:50112260-50112464 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 9-232 |
| Cow position: | chr6:51091514-51091725 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr6:51716697-51716907 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 9-232 |
| Cow position: | chr6:58603643-58603847 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 9-232 |
| Cow position: | chr6:59595406-59595617 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr6:64718474-64718684 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 9-232 |
| Cow position: | chr6:65906636-65906424 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 9-233 |
| Cow position: | chr6:44018675-44018465 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 10-232 |
| Cow position: | chr6:3486243-3486033 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 95 |
| Conread position: | 10-232 |
| Cow position: | chr6:17048469-17048670 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 12-232 |
| Cow position: | chr6:16592129-16592334 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 12-249 |
| Cow position: | chr6:38273736-38273957 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 13-232 |
| Cow position: | chr6:29479145-29479347 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 14-232 |
| Cow position: | chr6:14133587-14133381 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 91 |
| Conread position: | 17-232 |
| Cow position: | chr6:16051130-16050927 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 19-232 |
| Cow position: | chr6:34492317-34492518 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 20-232 |
| Cow position: | chr6:704378-704578 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 20-232 |
| Cow position: | chr6:27152279-27152079 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 20-232 |
| Cow position: | chr6:31587099-31586899 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 26-232 |
| Cow position: | chr6:39435751-39435558 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 28-232 |
| Cow position: | chr6:3756909-3757097 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 43-232 |
| Cow position: | chr6:61052910-61052733 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 51-232 |
| Cow position: | chr6:916239-916406 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 55-232 |
| Cow position: | chr6:10043417-10043580 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 119-230 |
| Cow position: | chr6:51149190-51149300 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 119-232 |
| Cow position: | chr6:21833398-21833285 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr6:27474670-27474780 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 119-232 |
| Cow position: | chr6:27527739-27527625 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 119-232 |
| Cow position: | chr6:28139009-28139121 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 119-232 |
| Cow position: | chr6:63705393-63705280 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-233 |
| Cow position: | chr6:55540021-55539907 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-222 |
| Cow position: | chr6:2580674-2580774 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-232 |
| Cow position: | chr6:60378418-60378524 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-232 |
| Cow position: | chr6:28064255-28064359 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-232 |
| Cow position: | chr6:43619994-43620093 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-232 |
| Cow position: | chr6:1508229-1508140 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-232 |
| Cow position: | chr6:3573058-3573146 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 144-232 |
| Cow position: | chr6:15278279-15278191 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-232 |
| Cow position: | chr6:28400957-28400883 (view UCSC Genome Browser custom track) |
| Alignm length: | 75 |
| Alignm identity: | 69 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.