Cow genome map

Conread name: rpliv0117_i12.y1

Conread position: 5-230
Cow position: chr7:67677312-67677524 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr7:13671-13456 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 96

Conread position: 5-232
Cow position: chr7:950445-950663 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr7:3298432-3298215 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr7:5260692-5260485 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 51, 80

Conread position: 5-232
Cow position: chr7:6665739-6665954 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr7:7276647-7276862 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chr7:20061717-20061928 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr7:20151474-20151259 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr7:20558022-20558237 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr7:24933316-24933104 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 50, 99

Conread position: 5-232
Cow position: chr7:26927934-26927719 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr7:27458496-27458279 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 51, 102

Conread position: 5-232
Cow position: chr7:46900350-46900135 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr7:49604331-49604116 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr7:55040240-55040025 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr7:56822960-56823173 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 88

Conread position: 5-232
Cow position: chr7:58920181-58920406 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 51, 77

Conread position: 5-232
Cow position: chr7:63388260-63388483 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 80

Conread position: 5-232
Cow position: chr7:65813077-65813291 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 94

Conread position: 5-233
Cow position: chr7:64011664-64011879 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 51, 82

Conread position: 5-259
Cow position: chr7:39132589-39132345 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 99

Conread position: 6-232
Cow position: chr7:3321895-3321680 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 41, 6

Conread position: 6-232
Cow position: chr7:20772344-20772131 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 50, 98

Conread position: 6-232
Cow position: chr7:20797207-20796998 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 69

Conread position: 8-232
Cow position: chr7:66022017-66022239 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 123

Conread position: 9-230
Cow position: chr7:31876516-31876722 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 11

Conread position: 9-230
Cow position: chr7:38146485-38146277 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 47, 93

Conread position: 9-230
Cow position: chr7:61810547-61810755 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 47, 96

Conread position: 9-231
Cow position: chr7:10429177-10428969 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr7:195657-195445 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 97

Conread position: 9-232
Cow position: chr7:444016-443804 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 97

Conread position: 9-232
Cow position: chr7:537596-537388 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr7:1368437-1368226 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr7:3127587-3127795 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 48, 96

Conread position: 9-232
Cow position: chr7:29472699-29472907 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 182
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 95

Conread position: 9-232
Cow position: chr7:33403638-33403427 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr7:34151189-34151400 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr7:34414811-34414599 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr7:42303208-42303002 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr7:42427093-42427302 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 19

Conread position: 9-232
Cow position: chr7:45946903-45946692 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr7:46748234-46748440 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 44, 62

Conread position: 9-232
Cow position: chr7:49071766-49071555 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 183
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr7:64351975-64352185 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr7:66907494-66907705 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 47, 96

Conread position: 9-233
Cow position: chr7:13531660-13531451 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 96

Conread position: 9-233
Cow position: chr7:28087338-28087548 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 95

Conread position: 9-233
Cow position: chr7:60728208-60728002 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 93, 0

Conread position: 9-239
Cow position: chr7:21125436-21125220 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 81

Conread position: 9-252
Cow position: chr7:26456996-26456764 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 95

Conread position: 10-232
Cow position: chr7:3122125-3122335 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 46, 94

Conread position: 10-232
Cow position: chr7:39597090-39596879 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 83

Conread position: 10-232
Cow position: chr7:59773559-59773768 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 46, 61

Conread position: 11-232
Cow position: chr7:14213150-14212941 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 45, 91

Conread position: 11-232
Cow position: chr7:21241488-21241283 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 45, 62

Conread position: 11-232
Cow position: chr7:27789734-27789938 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 57

Conread position: 11-232
Cow position: chr7:34488167-34488372 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 45, 27

Conread position: 11-232
Cow position: chr7:42225549-42225343 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 45, 93

Conread position: 13-232
Cow position: chr7:39096238-39096035 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 43, 16

Conread position: 20-232
Cow position: chr7:43395915-43395721 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 12

Conread position: 20-266
Cow position: chr7:67430810-67431040 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 31, 50

Conread position: 21-228
Cow position: chr7:67496485-67496680 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 83

Conread position: 22-232
Cow position: chr7:21316413-21316610 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 33, 79

Conread position: 23-264
Cow position: chr7:62608067-62607838 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 33, 60

Conread position: 25-232
Cow position: chr7:19468209-19468012 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 7

Conread position: 32-232
Cow position: chr7:21988902-21989088 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 24, 73

Conread position: 41-232
Cow position: chr7:6722307-6722486 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 149
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 15, 63

Conread position: 42-232
Cow position: chr7:60464995-60465173 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 37

Conread position: 119-216
Cow position: chr7:47191395-47191298 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr7:23535007-23535120 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr7:46265508-46265621 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr7:62990417-62990304 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 120-232
Cow position: chr7:34416009-34415897 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 120-232
Cow position: chr7:65871159-65871047 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 132-233
Cow position: chr7:1555757-1555859 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 139-231
Cow position: chr7:22346115-22346206 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 152-232
Cow position: chr7:1332040-1331960 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 74
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.