Cow genome map
| Conread name: | rpliv0117_i12.y1 |
| Conread position: | 5-232 |
| Cow position: | chr8:1569547-1569760 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 5-232 |
| Cow position: | chr8:1581879-1582095 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr8:6465301-6465516 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr8:10741215-10741000 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr8:11147841-11147627 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 5-232 |
| Cow position: | chr8:15223235-15223449 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 5-232 |
| Cow position: | chr8:21042200-21041985 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr8:21091909-21091694 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr8:21154917-21154705 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 5-232 |
| Cow position: | chr8:22569874-22569659 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 5-232 |
| Cow position: | chr8:24191399-24191614 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr8:29629188-29628973 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr8:32435419-32435208 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr8:36786371-36786155 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr8:42318845-42318630 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 5-232 |
| Cow position: | chr8:43542125-43541910 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr8:51317111-51317327 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 5-232 |
| Cow position: | chr8:55272100-55271888 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 5-232 |
| Cow position: | chr8:58184202-58183993 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 5-233 |
| Cow position: | chr8:32629594-32629367 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 5-233 |
| Cow position: | chr8:47067371-47067155 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 9-206 |
| Cow position: | chr8:38088347-38088537 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 9-215 |
| Cow position: | chr8:6749588-6749393 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 9-232 |
| Cow position: | chr8:2168086-2167879 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 9-232 |
| Cow position: | chr8:4688830-4689039 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 9-232 |
| Cow position: | chr8:8228958-8228755 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 9-232 |
| Cow position: | chr8:11834960-11835171 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 9-232 |
| Cow position: | chr8:14926449-14926238 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 9-232 |
| Cow position: | chr8:17313468-17313676 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 95 |
| Conread position: | 9-232 |
| Cow position: | chr8:18403899-18403688 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 9-232 |
| Cow position: | chr8:19333005-19333213 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 44, 95 |
| Conread position: | 9-232 |
| Cow position: | chr8:23773066-23773275 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr8:45793321-45793110 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 9-232 |
| Cow position: | chr8:47468243-47468035 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 9-232 |
| Cow position: | chr8:47659888-47659682 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 10-232 |
| Cow position: | chr8:5019441-5019651 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 10-232 |
| Cow position: | chr8:24913857-24913647 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 46, 95 |
| Conread position: | 10-232 |
| Cow position: | chr8:38393062-38393272 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 10-232 |
| Cow position: | chr8:39193488-39193278 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 46, 95 |
| Conread position: | 10-232 |
| Cow position: | chr8:49285634-49285423 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 41, 96 |
| Conread position: | 10-232 |
| Cow position: | chr8:56884652-56884861 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 10-234 |
| Cow position: | chr8:47489768-47489557 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 11-206 |
| Cow position: | chr8:35471737-35471919 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 11-232 |
| Cow position: | chr8:12805205-12805414 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 11-232 |
| Cow position: | chr8:51700755-51700965 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 12-232 |
| Cow position: | chr8:30485975-30485767 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 28-232 |
| Cow position: | chr8:36634065-36633872 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 42-232 |
| Cow position: | chr8:1467587-1467765 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 61-232 |
| Cow position: | chr8:14694071-14693912 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 43 |
| Conread position: | 118-232 |
| Cow position: | chr8:20091078-20090968 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 119-232 |
| Cow position: | chr8:3955571-3955684 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 119-232 |
| Cow position: | chr8:14630703-14630590 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr8:26877772-26877885 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-232 |
| Cow position: | chr8:36333785-36333675 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 119-232 |
| Cow position: | chr8:46652367-46652480 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-232 |
| Cow position: | chr8:29009132-29009244 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-232 |
| Cow position: | chr8:51858900-51859015 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 121-255 |
| Cow position: | chr8:45142885-45142752 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 122-232 |
| Cow position: | chr8:26393303-26393198 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 126-232 |
| Cow position: | chr8:30490394-30490288 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-232 |
| Cow position: | chr8:32317043-32316945 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-232 |
| Cow position: | chr8:11240730-11240657 (view UCSC Genome Browser custom track) |
| Alignm length: | 74 |
| Alignm identity: | 69 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.