Cow genome map

Conread name: rpliv0117_i12.y1

Conread position: 1-232
Cow position: chr9:2496649-2496435 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 55, 76

Conread position: 1-232
Cow position: chr9:30828828-30829046 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 55, 104

Conread position: 3-229
Cow position: chr9:17900488-17900279 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 50, 80

Conread position: 3-232
Cow position: chr9:17303890-17303676 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 65

Conread position: 4-216
Cow position: chr9:20779979-20780175 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 52, 65

Conread position: 4-232
Cow position: chr9:46041179-46040968 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 72

Conread position: 4-233
Cow position: chr9:29788615-29788401 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 52, 15

Conread position: 5-217
Cow position: chr9:31113202-31113399 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 79

Conread position: 5-232
Cow position: chr9:129114-128900 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 51, 15

Conread position: 5-232
Cow position: chr9:1249919-1249703 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 92

Conread position: 5-232
Cow position: chr9:2213224-2213436 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 51, 79

Conread position: 5-232
Cow position: chr9:2680650-2680865 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr9:3310698-3310909 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr9:4941414-4941199 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr9:6884407-6884620 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 51, 98

Conread position: 5-232
Cow position: chr9:7059987-7059772 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chr9:24422874-24422658 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 50, 100

Conread position: 5-232
Cow position: chr9:28680051-28680266 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr9:37174880-37175095 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 97

Conread position: 5-232
Cow position: chr9:38678211-38678426 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr9:44203993-44203778 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 51, 88

Conread position: 5-232
Cow position: chr9:47044046-47044261 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr9:48796217-48796002 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chr9:56302364-56302149 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 51, 98

Conread position: 5-232
Cow position: chr9:59538180-59538395 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-233
Cow position: chr9:60461659-60461443 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 57, 99

Conread position: 7-232
Cow position: chr9:2630680-2630892 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 49, 97

Conread position: 9-232
Cow position: chr9:1729224-1729014 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 18

Conread position: 9-232
Cow position: chr9:1741756-1741548 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr9:5535136-5534927 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr9:5626899-5627107 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 50, 61

Conread position: 9-232
Cow position: chr9:9015155-9015365 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 47, 21

Conread position: 9-232
Cow position: chr9:16177675-16177885 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 47, 69

Conread position: 9-232
Cow position: chr9:17313584-17313795 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr9:19157200-19156990 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chr9:27037192-27037401 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 47, 62

Conread position: 9-232
Cow position: chr9:31091265-31091476 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr9:32971457-32971668 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 96

Conread position: 9-232
Cow position: chr9:33593218-33593429 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 47, 95

Conread position: 9-232
Cow position: chr9:47004821-47005032 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 47, 93

Conread position: 9-232
Cow position: chr9:51180092-51179881 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 96

Conread position: 10-232
Cow position: chr9:1994323-1994119 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 49, 21

Conread position: 11-232
Cow position: chr9:28023892-28024101 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 45, 94

Conread position: 11-232
Cow position: chr9:28356648-28356856 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 177
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 45, 93

Conread position: 11-232
Cow position: chr9:45897836-45898044 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 45, 94

Conread position: 13-232
Cow position: chr9:64013137-64012930 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 91

Conread position: 28-232
Cow position: chr9:10938825-10939014 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 77

Conread position: 39-232
Cow position: chr9:30674180-30674361 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 66

Conread position: 43-232
Cow position: chr9:50325959-50326135 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 62

Conread position: 51-232
Cow position: chr9:52525281-52525448 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 51-232
Cow position: chr9:59480725-59480558 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 116-233
Cow position: chr9:1063524-1063407 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr9:2288956-2288844 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 119-232
Cow position: chr9:10644244-10644357 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chr9:34240921-34240809 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 119-232
Cow position: chr9:43303041-43302929 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 125-232
Cow position: chr9:10856203-10856309 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 128-236
Cow position: chr9:2526479-2526586 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 129-232
Cow position: chr9:10324006-10324109 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 130-232
Cow position: chr9:56175963-56176065 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 133-232
Cow position: chr9:5453444-5453543 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 133-265
Cow position: chr9:26738208-26738333 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 154-232
Cow position: chr9:14002255-14002333 (view UCSC Genome Browser custom track)
Alignm length: 79
Alignm identity: 71
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.