Cow genome map

Conread name: rpliv0117_i12.y1

Conread position: 1-232
Cow position: chrX:3083151-3082934 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 55, 103

Conread position: 4-232
Cow position: chrX:17665814-17665597 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 31, 95

Conread position: 4-232
Cow position: chrX:28586968-28587180 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 52, 35

Conread position: 5-232
Cow position: chrX:2480642-2480428 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 94

Conread position: 5-232
Cow position: chrX:2578410-2578625 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 51, 93

Conread position: 5-232
Cow position: chrX:2814493-2814278 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:3373934-3373719 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:3466656-3466441 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:5321728-5321513 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 100

Conread position: 5-232
Cow position: chrX:6280800-6280601 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 5-232
Cow position: chrX:6579931-6580143 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 34

Conread position: 5-232
Cow position: chrX:7119476-7119691 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:7753890-7754105 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 49, 102

Conread position: 5-232
Cow position: chrX:11458817-11458601 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 51, 88

Conread position: 5-232
Cow position: chrX:13072461-13072246 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:13093021-13092806 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:15978959-15978753 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 5-232
Cow position: chrX:16701668-16701883 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:16709950-16710165 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:16805155-16804940 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:16809900-16809685 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:17476422-17476207 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:17890532-17890745 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 51, 98

Conread position: 5-232
Cow position: chrX:18657817-18657602 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:19475167-19474949 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:20358016-20357801 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:22565701-22565486 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:24446224-24446009 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:24730634-24730849 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 51, 90

Conread position: 5-232
Cow position: chrX:26623822-26623610 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 94

Conread position: 5-232
Cow position: chrX:27424299-27424084 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:28505276-28505061 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 49, 99

Conread position: 5-232
Cow position: chrX:28559887-28559672 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:30436891-30437106 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:31494719-31494935 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:32065178-32064963 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:34093843-34093628 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 51, 100

Conread position: 5-232
Cow position: chrX:37814134-37814349 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-232
Cow position: chrX:39561947-39561732 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 51, 99

Conread position: 5-233
Cow position: chrX:5281795-5281579 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 178
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 51, 99

Conread position: 5-233
Cow position: chrX:12358874-12359090 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 50, 99

Conread position: 5-233
Cow position: chrX:28520612-28520398 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 51, 93

Conread position: 5-233
Cow position: chrX:29095331-29095115 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 99

Conread position: 6-232
Cow position: chrX:15622505-15622291 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 50, 96

Conread position: 6-232
Cow position: chrX:21766617-21766831 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 50, 98

Conread position: 6-232
Cow position: chrX:39712540-39712752 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 50, 100

Conread position: 9-206
Cow position: chrX:41849216-41849028 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 26, 98

Conread position: 9-228
Cow position: chrX:2144961-2145169 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 97

Conread position: 9-230
Cow position: chrX:26765213-26765004 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 47, 95

Conread position: 9-231
Cow position: chrX:15040552-15040345 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 29

Conread position: 9-232
Cow position: chrX:7552818-7552607 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 47, 94

Conread position: 9-232
Cow position: chrX:10867857-10867647 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 47, 94

Conread position: 9-232
Cow position: chrX:12463995-12464207 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 44, 96

Conread position: 9-232
Cow position: chrX:20724961-20725172 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 94

Conread position: 9-232
Cow position: chrX:21225468-21225679 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 46, 96

Conread position: 9-232
Cow position: chrX:21268076-21267869 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 9-232
Cow position: chrX:21388574-21388785 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 47, 96

Conread position: 9-232
Cow position: chrX:21751670-21751459 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 42, 89

Conread position: 9-232
Cow position: chrX:21831502-21831714 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 46, 97

Conread position: 9-232
Cow position: chrX:23021305-23021516 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 47, 93

Conread position: 9-232
Cow position: chrX:23279018-23279226 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 90

Conread position: 9-232
Cow position: chrX:23388556-23388348 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 47, 8

Conread position: 9-232
Cow position: chrX:24110579-24110370 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 53, 85

Conread position: 9-232
Cow position: chrX:28608100-28607893 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 9-232
Cow position: chrX:30181936-30181726 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 86

Conread position: 9-232
Cow position: chrX:36838707-36838921 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 47, 89

Conread position: 9-232
Cow position: chrX:38149586-38149797 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 47, 96

Conread position: 9-260
Cow position: chrX:21413589-21413829 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 47, 95

Conread position: 10-232
Cow position: chrX:22809887-22810094 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 46, 94

Conread position: 10-232
Cow position: chrX:22818066-22818275 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 26, 95

Conread position: 11-232
Cow position: chrX:9170380-9170172 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 45, 66

Conread position: 11-232
Cow position: chrX:23454058-23453853 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 44, 27

Conread position: 11-232
Cow position: chrX:26756649-26756441 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 45, 93

Conread position: 11-232
Cow position: chrX:39696767-39696969 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 59

Conread position: 13-232
Cow position: chrX:16022758-16022964 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 43, 91

Conread position: 14-232
Cow position: chrX:18221412-18221618 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 42, 90

Conread position: 21-232
Cow position: chrX:21492168-21492367 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 34, 84

Conread position: 61-233
Cow position: chrX:35022302-35022454 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 117-232
Cow position: chrX:6373640-6373756 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 118-232
Cow position: chrX:23573716-23573602 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 119-230
Cow position: chrX:4906905-4906794 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 119-231
Cow position: chrX:27496973-27497082 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 119-231
Cow position: chrX:30059270-30059379 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 119-232
Cow position: chrX:1941272-1941159 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 11

Conread position: 119-232
Cow position: chrX:5865228-5865341 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chrX:6236737-6236627 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 119-232
Cow position: chrX:20741541-20741428 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 119-232
Cow position: chrX:23394694-23394807 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 120-232
Cow position: chrX:26443639-26443751 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 74

Conread position: 126-232
Cow position: chrX:14461411-14461517 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.