Cow genome map
| Conread name: | rpliv0130_k3.y1 |
| Conread position: | 145-543 |
| Cow position: | chr1:22660060-22659650 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 163-545 |
| Cow position: | chr1:82422626-82423038 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 253-531 |
| Cow position: | chr1:67905373-67905669 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 254-457 |
| Cow position: | chr1:28469987-28469767 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 256-489 |
| Cow position: | chr1:93571494-93571744 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 256-553 |
| Cow position: | chr1:93441115-93440786 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 260-490 |
| Cow position: | chr1:8319300-8319056 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 260-490 |
| Cow position: | chr1:82420309-82420560 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 209 |
| Conread position: | 260-501 |
| Cow position: | chr1:57892864-57893104 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 260-503 |
| Cow position: | chr1:81468963-81469221 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 260-507 |
| Cow position: | chr1:13797975-13797703 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 260-527 |
| Cow position: | chr1:96142627-96142343 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 260-534 |
| Cow position: | chr1:22605493-22605782 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 260-553 |
| Cow position: | chr1:91819352-91819665 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 261-434 |
| Cow position: | chr1:89399158-89398971 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 261-473 |
| Cow position: | chr1:22442425-22442654 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 261-488 |
| Cow position: | chr1:47636314-47636067 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 262-478 |
| Cow position: | chr1:91977105-91977339 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 263-489 |
| Cow position: | chr1:46241503-46241744 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 265-507 |
| Cow position: | chr1:6971265-6971027 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 275-491 |
| Cow position: | chr1:100077626-100077401 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 305-466 |
| Cow position: | chr1:69346223-69346060 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 336-516 |
| Cow position: | chr1:39066983-39067161 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 336-553 |
| Cow position: | chr1:22607657-22607884 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 337-490 |
| Cow position: | chr1:70256710-70256552 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 337-553 |
| Cow position: | chr1:11347079-11346872 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 340-544 |
| Cow position: | chr1:30068904-30068694 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 344-476 |
| Cow position: | chr1:96313200-96313066 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 344-489 |
| Cow position: | chr1:24229879-24229730 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 344-490 |
| Cow position: | chr1:6971830-6971979 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 344-490 |
| Cow position: | chr1:60452384-60452534 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 344-490 |
| Cow position: | chr1:93429820-93429671 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 344-545 |
| Cow position: | chr1:75266834-75266623 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 347-520 |
| Cow position: | chr1:9147661-9147483 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 347-545 |
| Cow position: | chr1:1778118-1778321 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 347-545 |
| Cow position: | chr1:69240011-69240210 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 75 |
| Conread position: | 356-476 |
| Cow position: | chr1:10768607-10768484 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 389-554 |
| Cow position: | chr1:63199026-63198865 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 415-547 |
| Cow position: | chr1:64730386-64730524 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.