Cow genome map
| Conread name: | rpliv0130_k3.y1 |
| Conread position: | 143-534 |
| Cow position: | chr11:36397543-36397121 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 40 |
| Conread position: | 145-508 |
| Cow position: | chr11:18138980-18139368 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 260-478 |
| Cow position: | chr11:19228422-19228196 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 260-489 |
| Cow position: | chr11:30474185-30473936 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 260-498 |
| Cow position: | chr11:58354976-58354736 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 17, 123 |
| Conread position: | 260-505 |
| Cow position: | chr11:14191327-14191595 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-516 |
| Cow position: | chr11:12320564-12320840 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 260-545 |
| Cow position: | chr11:11396761-11396454 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 227 |
| Conread position: | 260-553 |
| Cow position: | chr11:48059115-48059413 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 261-490 |
| Cow position: | chr11:3612626-3612390 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 261-490 |
| Cow position: | chr11:18179873-18180112 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 262-506 |
| Cow position: | chr11:6753026-6752767 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 248 |
| Conread position: | 263-443 |
| Cow position: | chr11:37136797-37136604 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 263-467 |
| Cow position: | chr11:47885114-47884898 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 263-485 |
| Cow position: | chr11:63667236-63667001 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 263-490 |
| Cow position: | chr11:32075812-32075566 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 264-471 |
| Cow position: | chr11:85701899-85701675 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 201 |
| Conread position: | 265-527 |
| Cow position: | chr11:37328405-37328137 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 327-473 |
| Cow position: | chr11:40582524-40582672 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 329-489 |
| Cow position: | chr11:33189942-33190105 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 337-543 |
| Cow position: | chr11:41226091-41226308 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 337-550 |
| Cow position: | chr11:65753066-65753290 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 337-553 |
| Cow position: | chr11:48074210-48073991 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 144 |
| Conread position: | 340-534 |
| Cow position: | chr11:433286-433089 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 344-472 |
| Cow position: | chr11:55183538-55183668 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 344-473 |
| Cow position: | chr11:83551679-83551549 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 123 |
| Conread position: | 344-503 |
| Cow position: | chr11:50040633-50040469 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 344-553 |
| Cow position: | chr11:70694265-70694049 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 344-554 |
| Cow position: | chr11:35745675-35745460 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 347-554 |
| Cow position: | chr11:12336361-12336577 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.