Cow genome map
| Conread name: | rpliv0130_k3.y1 |
| Conread position: | 153-489 |
| Cow position: | chr5:49610203-49609844 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 254-553 |
| Cow position: | chr5:3396518-3396842 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 260-489 |
| Cow position: | chr5:34025051-34024803 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 260-490 |
| Cow position: | chr5:47767755-47768004 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 260-491 |
| Cow position: | chr5:45196639-45196390 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 208 |
| Conread position: | 260-505 |
| Cow position: | chr5:51247704-51247466 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 260-553 |
| Cow position: | chr5:42709713-42710008 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 261-490 |
| Cow position: | chr5:63793609-63793850 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 262-554 |
| Cow position: | chr5:9328669-9328968 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 47, 173 |
| Conread position: | 263-463 |
| Cow position: | chr5:47837932-47838151 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 263-527 |
| Cow position: | chr5:2188773-2188489 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 204 |
| Conread position: | 264-490 |
| Cow position: | chr5:47460107-47459865 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 264-508 |
| Cow position: | chr5:16177164-16177422 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 288-493 |
| Cow position: | chr5:12690899-12691114 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 135 |
| Conread position: | 290-545 |
| Cow position: | chr5:9520335-9520605 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 292-508 |
| Cow position: | chr5:49879315-49879086 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 115 |
| Conread position: | 299-490 |
| Cow position: | chr5:57628862-57628666 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 309-527 |
| Cow position: | chr5:47837066-47836844 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 309-545 |
| Cow position: | chr5:767015-767261 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 314-494 |
| Cow position: | chr5:39324581-39324396 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 140 |
| Conread position: | 333-510 |
| Cow position: | chr5:20848258-20848076 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 336-488 |
| Cow position: | chr5:56269549-56269393 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 337-527 |
| Cow position: | chr5:43658759-43658558 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 337-542 |
| Cow position: | chr5:43087235-43087448 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 8, 121 |
| Conread position: | 343-524 |
| Cow position: | chr5:63078352-63078534 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 159 |
| Conread position: | 344-461 |
| Cow position: | chr5:51822711-51822592 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 344-468 |
| Cow position: | chr5:63252327-63252453 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 344-490 |
| Cow position: | chr5:59044965-59045115 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 344-490 |
| Cow position: | chr5:59053419-59053569 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 344-534 |
| Cow position: | chr5:45565118-45564923 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 344-553 |
| Cow position: | chr5:60922266-60922482 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 104 |
| Conread position: | 344-562 |
| Cow position: | chr5:63395448-63395224 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 382-496 |
| Cow position: | chr5:39085085-39085205 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.