Cow genome map
| Conread name: | rpliv0130_k3.y1 |
| Conread position: | 160-537 |
| Cow position: | chrX:13817040-13816624 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 163-553 |
| Cow position: | chrX:1340316-1340750 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 256-468 |
| Cow position: | chrX:25236848-25237065 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 260-448 |
| Cow position: | chrX:802947-802749 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 260-468 |
| Cow position: | chrX:31919074-31919299 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 260-483 |
| Cow position: | chrX:21177713-21177956 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 200 |
| Conread position: | 260-487 |
| Cow position: | chrX:11840677-11840918 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 214 |
| Conread position: | 260-487 |
| Cow position: | chrX:23364228-23364477 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 260-527 |
| Cow position: | chrX:42549805-42549529 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 260-527 |
| Cow position: | chrX:42915763-42915491 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 170 |
| Conread position: | 260-545 |
| Cow position: | chrX:38739998-38739685 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 260-553 |
| Cow position: | chrX:31443958-31443655 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 260-568 |
| Cow position: | chrX:31908873-31909211 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 304 |
| Conread position: | 261-488 |
| Cow position: | chrX:42066487-42066243 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 263-473 |
| Cow position: | chrX:42559333-42559559 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 263-503 |
| Cow position: | chrX:29774696-29774439 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 322-490 |
| Cow position: | chrX:34863338-34863511 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 336-545 |
| Cow position: | chrX:21242931-21243158 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 344-489 |
| Cow position: | chrX:32568549-32568699 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 344-489 |
| Cow position: | chrX:41929987-41929838 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 344-508 |
| Cow position: | chrX:13259324-13259491 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 344-553 |
| Cow position: | chrX:6815751-6815530 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 347-499 |
| Cow position: | chrX:31466030-31466184 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 347-524 |
| Cow position: | chrX:25434985-25434802 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 348-554 |
| Cow position: | chrX:39097237-39097443 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 355-485 |
| Cow position: | chrX:4547456-4547586 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 111 |
| Conread position: | 356-545 |
| Cow position: | chrX:18507512-18507708 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 362-498 |
| Cow position: | chrX:17482984-17483123 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 362-524 |
| Cow position: | chrX:25227482-25227317 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 23, 132 |
| Conread position: | 364-503 |
| Cow position: | chrX:38737334-38737477 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.