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Cow genome map

           
Conread name:
           
rpliv0131_d19.y1
        

               
Conread position:
               
1-132
               

               
Cow position:
               
chr28:3311032-3311168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr28:16159681-16159819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr28:21263343-21263209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr28:16252219-16252360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 61
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr28:21118869-21118722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr28:34830343-34830199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr28:8516001-8516142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr28:4230999-4230851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr28:16200551-16200704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr28:30921868-30922024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr28:24698882-24698722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr28:26960724-26960877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr28:21744901-21744745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr28:26269588-26269416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr28:3729831-3729990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr28:10252726-10252890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr28:13160354-13160519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr28:30385344-30385180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 157
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr28:4870607-4870781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr28:11239123-11239296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr28:22085356-22085519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr28:26820087-26820256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr28:3678548-3678384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 81
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr28:118803-118630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr28:17620170-17620339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr28:2892445-2892271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr28:33032667-33032507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr28:3423966-3423795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr28:12628928-12628754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr28:23728120-23728281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr28:11827877-11827704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 148
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr28:659098-659282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr28:32014974-32014793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr28:7504070-7503889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
86, 153
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr28:7644933-7644748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 113
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr28:8716191-8716379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
72, 181
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr28:16856917-16857099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
82, 157
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr28:9109400-9109223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr28:20046731-20046560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr28:117569-117757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr28:2821450-2821259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr28:5552518-5552708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
65, 183
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr28:13174365-13174558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr28:20968387-20968574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr28:4074166-4073973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr28:19994757-19994943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
89, 146
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr28:4163391-4163579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
89, 160
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr28:11411350-11411536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
159, 67
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr28:17727923-17728099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr28:21207188-21207368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
104, 64
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr28:7413852-7413652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr28:5441708-5441901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr28:30902310-30902122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr28:5674061-5673870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr28:26826411-26826217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
89, 164
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr28:26810870-26810672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 52
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr28:5188241-5188437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr28:6563705-6563910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr28:15362767-15362567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr28:10196681-10196881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
174, 51
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr28:10480614-10480821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr28:5232129-5231920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr28:19127983-19128187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
89, 118
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr28:11743639-11743841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr28:4937050-4937265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr28:8304431-8304224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
167, 67
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:4006970-4006761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 78
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:13133824-13133608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:20174027-20173812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:5205440-5205246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:6975423-6975216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:12991324-12991111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
168, 65
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:22182944-22183172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr28:10958988-10958767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr28:11398605-11398823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr28:18770276-18770059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr28:7964489-7964695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 165
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr28:11987352-11987147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
159, 14
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr28:12055590-12055385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
159, 14
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr28:13356177-13356394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
51, 169
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr28:21008482-21008695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr28:5255060-5254842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr28:27721885-27721670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
87, 111
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr28:17740014-17739787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
89, 162
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr28:2279413-2279631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr28:4186092-4185858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
208, 67
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr28:19217001-19216778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr28:5236063-5235835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr28:3726019-3726262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr28:11814890-11815127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr28:34843383-34843623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 145
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr28:3445291-3445533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr28:11059680-11059451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr28:4013272-4013031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr28:7618971-7619208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
218, 31
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr28:18847750-18847494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 221
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr28:4873135-4873405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr28:5630288-5630029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 117
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr28:20397177-20397427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr28:6283301-6283550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr28:17012116-17012360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr28:5138810-5139078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
217, 61
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr28:4046033-4045770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr28:7350839-7350575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr28:10298028-10297776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr28:11197483-11197771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 165
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr28:23296508-23296212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 67
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr28:3011078-3011385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 144
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr28:7371921-7372234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr28:19564046-19564341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 66
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr28:6358221-6358530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 201
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr28:32593445-32593772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr28:3484775-3484452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr28:11346300-11346611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr28:3449498-3449168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 232
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr28:12933547-12933864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr28:19262395-19262727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 201
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr28:18369824-18370148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 140
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr28:7008792-7009118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr28:22813437-22813119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
321, 66
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr28:10495111-10495426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr28:22571495-22571816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
216, 16
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr28:4159153-4158807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
67, 208
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr28:24082459-24082113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 276
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr28:26328148-26327796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr28:5200016-5199664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 217
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr28:3406223-3406595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr28:4643581-4643928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr28:8291602-8291270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
204, 59
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr28:11866479-11866831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 62
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr28:13245753-13245384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 222
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr28:4834654-4835009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr28:4016712-4016368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr28:6091545-6091181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 82
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr28:12400431-12400025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 250
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr28:14720595-14720959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr28:21046400-21046750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
73, 90
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr28:23724280-23724645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 62
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr28:10845291-10844920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr28:4089870-4090248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 143
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr28:4884064-4884476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
76, 186
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr28:5436897-5437301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 116
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr28:29416536-29416927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 83
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr28:12598525-12598134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
272, 67
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr28:25973731-25973311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 223
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr28:10053143-10053558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr28:14710528-14710123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr28:5273238-5273649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 270
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr28:751417-750997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 120
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr28:9100117-9099704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 8
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr28:12951605-12951202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr28:34430234-34430663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 79
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr28:11422630-11423045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr28:16369900-16370328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr28:3492598-3493039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 89
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr28:13866012-13865588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 51
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr28:26719519-26719103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 69
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr28:27218514-27218063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 134
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr28:16204141-16204592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 225
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr28:34230420-34229963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 214
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr28:5074332-5074771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
272, 46
               

               
Conread position:
               
1-459
               

               
Cow position:
               
chr28:23410145-23410596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 48
               

               
Conread position:
               
1-463
               

               
Cow position:
               
chr28:616558-616127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr28:26743820-26743332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 231
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr28:23007553-23008022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 56
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr28:1383083-1383545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 227
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr28:10669776-10669267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 351
               

               
Conread position:
               
1-523
               

               
Cow position:
               
chr28:5204374-5203870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
1-536
               

               
Cow position:
               
chr28:33884591-33884062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
1-536
               

               
Cow position:
               
chr28:34877783-34878317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 154
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr28:8347923-8347369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 219
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr28:9426163-9426695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 56
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr28:16918985-16919523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 64
               

               
Conread position:
               
1-555
               

               
Cow position:
               
chr28:11759372-11759904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 190
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr28:33163287-33163828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 51
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr28:10615761-10616335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
1-595
               

               
Cow position:
               
chr28:14998253-14997657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
1-601
               

               
Cow position:
               
chr28:3746386-3745791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr28:25057145-25056550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
1-609
               

               
Cow position:
               
chr28:662289-661690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 82
               

               
Conread position:
               
1-611
               

               
Cow position:
               
chr28:4071147-4070542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 14
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:3143696-3144311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 56
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:3914894-3914286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 50
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:9285188-9285787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:13474488-13473888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 198
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:21103631-21104268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 164
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:21868646-21868027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:22133097-22132498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:23616594-23615978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr28:24966575-24965961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 179
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:1838185-1837574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 144
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:4282300-4282918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 160
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:5931533-5930926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:7697790-7698385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 148
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:8787728-8787134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 125
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:10606449-10607036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 34
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:14657905-14657271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 230
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:18791223-18790589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 235
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:20124970-20124363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 50
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:21845140-21844530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 16
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:24672457-24671845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 220
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr28:25700681-25701284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
2-148
               

               
Cow position:
               
chr28:6301272-6301121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr28:19118160-19118000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr28:8898242-8898067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr28:5609730-5609904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
75, 168
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr28:12974072-12973874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr28:16879756-16879567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr28:8259820-8259612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr28:555684-555484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr28:19015889-19015696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr28:3200650-3200434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr28:17680813-17680584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 213
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr28:17948929-17949154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr28:11057856-11058086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 147
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr28:13370951-13371196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
74, 170
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr28:20759505-20759758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 128
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr28:31223369-31223671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
88, 78
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr28:7439427-7439094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
83, 103
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr28:13527386-13527052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr28:30746550-30746879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr28:29988921-29989269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
88, 57
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chr28:26982548-26982900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 50
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr28:2524130-2523745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr28:5144326-5144754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 221
               

               
Conread position:
               
2-440
               

               
Cow position:
               
chr28:5236407-5236852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 224
               

               
Conread position:
               
2-536
               

               
Cow position:
               
chr28:13267957-13267433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 67
               

               
Conread position:
               
2-557
               

               
Cow position:
               
chr28:5827119-5826579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 64
               

               
Conread position:
               
2-592
               

               
Cow position:
               
chr28:7267761-7268343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 88
               

               
Conread position:
               
2-608
               

               
Cow position:
               
chr28:12430795-12430186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 146
               

               
Conread position:
               
2-609
               

               
Cow position:
               
chr28:23531051-23530443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 13
               

               
Conread position:
               
2-610
               

               
Cow position:
               
chr28:5684888-5684282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 73
               

               
Conread position:
               
2-610
               

               
Cow position:
               
chr28:30326913-30327505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 66
               

               
Conread position:
               
2-611
               

               
Cow position:
               
chr28:11546897-11547502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 220
               

               
Conread position:
               
2-614
               

               
Cow position:
               
chr28:11585021-11585633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
2-614
               

               
Cow position:
               
chr28:20409579-20408957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chr28:8655979-8656125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chr28:11562056-11562215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr28:28602940-28602774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
3-172
               

               
Cow position:
               
chr28:26530680-26530850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr28:18176057-18176234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr28:27445388-27445560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr28:17656603-17656427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr28:18797497-18797311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr28:1654903-1655112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 204
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chr28:7131904-7132111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr28:33561553-33561337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr28:2933240-2933455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr28:26265017-26264795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr28:3410802-3411046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr28:12662203-12662456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr28:19361926-19361682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
82, 206
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr28:16450345-16450623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 139
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr28:17071527-17071240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 232
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr28:12672274-12672587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 217
               

               
Conread position:
               
3-450
               

               
Cow position:
               
chr28:23460331-23459876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 67
               

               
Conread position:
               
3-495
               

               
Cow position:
               
chr28:2801414-2800939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
3-498
               

               
Cow position:
               
chr28:16416831-16416347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
3-508
               

               
Cow position:
               
chr28:4307706-4308218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 341
               

               
Conread position:
               
3-514
               

               
Cow position:
               
chr28:24343540-24343048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 64
               

               
Conread position:
               
3-612
               

               
Cow position:
               
chr28:30293399-30294011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
3-614
               

               
Cow position:
               
chr28:21363927-21363334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
4-151
               

               
Cow position:
               
chr28:1490204-1490356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
4-184
               

               
Cow position:
               
chr28:10888810-10888641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
4-213
               

               
Cow position:
               
chr28:10700046-10699836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 112
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr28:5262705-5262433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 132
               

               
Conread position:
               
4-422
               

               
Cow position:
               
chr28:26340520-26340102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 212
               

               
Conread position:
               
5-145
               

               
Cow position:
               
chr28:16419710-16419568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
84, 8
               

               
Conread position:
               
5-166
               

               
Cow position:
               
chr28:24887780-24887614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chr28:25827543-25827725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr28:7557545-7557734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr28:18608180-18608368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr28:23262265-23262460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 136
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr28:26943967-26944182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr28:28810141-28809885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
82, 71
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr28:12362975-12363270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr28:4440484-4440146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 226
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr28:8359085-8358746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 152
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr28:24367757-24368205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 135
               

               
Conread position:
               
5-511
               

               
Cow position:
               
chr28:7512396-7512913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 170
               

               
Conread position:
               
5-559
               

               
Cow position:
               
chr28:34442571-34443134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 189
               

               
Conread position:
               
5-597
               

               
Cow position:
               
chr28:5818023-5817439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
5-614
               

               
Cow position:
               
chr28:14151411-14150812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 191
               

               
Conread position:
               
5-614
               

               
Cow position:
               
chr28:16210916-16211518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 196
               

               
Conread position:
               
6-116
               

               
Cow position:
               
chr28:8141842-8141727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
6-172
               

               
Cow position:
               
chr28:2825606-2825435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
6-177
               

               
Cow position:
               
chr28:5402859-5403031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
6-203
               

               
Cow position:
               
chr28:13048097-13048298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
84, 172
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr28:19294951-19295151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 5
               

               
Conread position:
               
6-313
               

               
Cow position:
               
chr28:3741053-3740762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr28:19055201-19054812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 122
               

               
Conread position:
               
6-557
               

               
Cow position:
               
chr28:10745399-10744837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 222
               

               
Conread position:
               
6-570
               

               
Cow position:
               
chr28:22332714-22332168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
6-614
               

               
Cow position:
               
chr28:15272086-15272686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 214
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr28:4876621-4876442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr28:24693462-24693117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
7-612
               

               
Cow position:
               
chr28:11527076-11527685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 55
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr28:9384109-9384301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
8-365
               

               
Cow position:
               
chr28:16403540-16403179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
8-612
               

               
Cow position:
               
chr28:16409596-16408994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr28:23650048-23650230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
9-209
               

               
Cow position:
               
chr28:13938012-13938223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
78, 66
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr28:26517319-26517099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
9-299
               

               
Cow position:
               
chr28:26055659-26055366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
212, 0
               

               
Conread position:
               
9-608
               

               
Cow position:
               
chr28:10681641-10682241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 133
               

               
Conread position:
               
9-612
               

               
Cow position:
               
chr28:4138486-4139102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 209
               

               
Conread position:
               
9-614
               

               
Cow position:
               
chr28:30303027-30303613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 54
               

               
Conread position:
               
10-213
               

               
Cow position:
               
chr28:8112090-8112299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
10-599
               

               
Cow position:
               
chr28:19221963-19222556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 189
               

               
Conread position:
               
11-612
               

               
Cow position:
               
chr28:16412934-16412333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
12-167
               

               
Cow position:
               
chr28:11006907-11006747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
12-184
               

               
Cow position:
               
chr28:22630183-22630016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
6, 72
               

               
Conread position:
               
12-570
               

               
Cow position:
               
chr28:28765722-28766291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 209
               

               
Conread position:
               
14-437
               

               
Cow position:
               
chr28:2899174-2898746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 206
               

               
Conread position:
               
15-167
               

               
Cow position:
               
chr28:25459928-25459774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
17-170
               

               
Cow position:
               
chr28:20281926-20281776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
17-247
               

               
Cow position:
               
chr28:33322630-33322397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
17-279
               

               
Cow position:
               
chr28:11559460-11559722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
17-385
               

               
Cow position:
               
chr28:4809948-4809596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
234, 30
               

               
Conread position:
               
17-439
               

               
Cow position:
               
chr28:22346198-22345768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 242
               

               
Conread position:
               
17-523
               

               
Cow position:
               
chr28:17637688-17638199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 208
               

               
Conread position:
               
17-614
               

               
Cow position:
               
chr28:25727546-25726952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 52
               

               
Conread position:
               
18-330
               

               
Cow position:
               
chr28:23447656-23447964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
18-418
               

               
Cow position:
               
chr28:18625409-18624992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
19-612
               

               
Cow position:
               
chr28:26103869-26103303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 63
               

               
Conread position:
               
19-614
               

               
Cow position:
               
chr28:16085485-16084901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 16
               

               
Conread position:
               
20-175
               

               
Cow position:
               
chr28:22307179-22307022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
20-182
               

               
Cow position:
               
chr28:4022846-4022679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr28:4881073-4881442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
20-422
               

               
Cow position:
               
chr28:11884358-11884757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 21
               

               
Conread position:
               
21-226
               

               
Cow position:
               
chr28:28561070-28560858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
21-257
               

               
Cow position:
               
chr28:17748228-17748468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 152
               

               
Conread position:
               
21-451
               

               
Cow position:
               
chr28:3408053-3408480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 47
               

               
Conread position:
               
23-184
               

               
Cow position:
               
chr28:13448291-13448127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
67, 56
               

               
Conread position:
               
23-270
               

               
Cow position:
               
chr28:24707075-24706824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 200
               

               
Conread position:
               
23-294
               

               
Cow position:
               
chr28:11307347-11307612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
67, 197
               

               
Conread position:
               
23-318
               

               
Cow position:
               
chr28:5193494-5193192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
23-341
               

               
Cow position:
               
chr28:25728358-25728049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
23-496
               

               
Cow position:
               
chr28:6059295-6059775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 204
               

               
Conread position:
               
23-612
               

               
Cow position:
               
chr28:23793144-23793749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 47
               

               
Conread position:
               
23-614
               

               
Cow position:
               
chr28:31649239-31648646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 50
               

               
Conread position:
               
24-472
               

               
Cow position:
               
chr28:2819938-2819474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
27-332
               

               
Cow position:
               
chr28:9812435-9812142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
27-380
               

               
Cow position:
               
chr28:28631900-28631530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 197
               

               
Conread position:
               
28-430
               

               
Cow position:
               
chr28:33036316-33036707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
228, 40
               

               
Conread position:
               
28-596
               

               
Cow position:
               
chr28:16411147-16410583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
30-450
               

               
Cow position:
               
chr28:26533706-26533280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 160
               

               
Conread position:
               
30-453
               

               
Cow position:
               
chr28:16386359-16386771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 41
               

               
Conread position:
               
31-336
               

               
Cow position:
               
chr28:10907245-10906932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 194
               

               
Conread position:
               
34-440
               

               
Cow position:
               
chr28:4938957-4938586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
36-245
               

               
Cow position:
               
chr28:4823765-4823552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 174
               

               
Conread position:
               
43-214
               

               
Cow position:
               
chr28:23047768-23047594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 117
               

               
Conread position:
               
44-196
               

               
Cow position:
               
chr28:30081576-30081732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
45-248
               

               
Cow position:
               
chr28:17601406-17601610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
45, 175
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr28:8149486-8149683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
43, 169
               

               
Conread position:
               
47-583
               

               
Cow position:
               
chr28:12947095-12946549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 207
               

               
Conread position:
               
47-614
               

               
Cow position:
               
chr28:25763169-25762605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 176
               

               
Conread position:
               
49-614
               

               
Cow position:
               
chr28:11047742-11047150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 178
               

               
Conread position:
               
51-583
               

               
Cow position:
               
chr28:16405885-16405374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
52-233
               

               
Cow position:
               
chr28:7498006-7498192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
52-279
               

               
Cow position:
               
chr28:8147723-8147950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
52-333
               

               
Cow position:
               
chr28:27161186-27161472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
52-361
               

               
Cow position:
               
chr28:2752353-2752666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 160
               

               
Conread position:
               
52-379
               

               
Cow position:
               
chr28:10999538-10999860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
156, 59
               

               
Conread position:
               
52-449
               

               
Cow position:
               
chr28:19025864-19026264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 255
               

               
Conread position:
               
52-507
               

               
Cow position:
               
chr28:16402032-16401578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
52-600
               

               
Cow position:
               
chr28:6971209-6971751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
52-614
               

               
Cow position:
               
chr28:7684563-7685102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
52-614
               

               
Cow position:
               
chr28:16110078-16109527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
53-300
               

               
Cow position:
               
chr28:34247891-34248133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
41, 160
               

               
Conread position:
               
53-438
               

               
Cow position:
               
chr28:22321556-22321172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
53-614
               

               
Cow position:
               
chr28:20313415-20312847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
54-575
               

               
Cow position:
               
chr28:19079706-19080257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 167
               

               
Conread position:
               
55-284
               

               
Cow position:
               
chr28:7388636-7388861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
55-303
               

               
Cow position:
               
chr28:17398096-17398338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
37, 146
               

               
Conread position:
               
55-303
               

               
Cow position:
               
chr28:17414337-17414579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
37, 146
               

               
Conread position:
               
55-336
               

               
Cow position:
               
chr28:4355684-4355403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 123
               

               
Conread position:
               
55-398
               

               
Cow position:
               
chr28:31248979-31248636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
55-614
               

               
Cow position:
               
chr28:28164223-28163671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
57-446
               

               
Cow position:
               
chr28:29434292-29434685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 154
               

               
Conread position:
               
57-614
               

               
Cow position:
               
chr28:25806699-25806171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 33
               

               
Conread position:
               
58-248
               

               
Cow position:
               
chr28:5650603-5650795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
42, 156
               

               
Conread position:
               
58-526
               

               
Cow position:
               
chr28:2960696-2961156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
59-214
               

               
Cow position:
               
chr28:17136158-17136318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
60-441
               

               
Cow position:
               
chr28:33052169-33051767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 249
               

               
Conread position:
               
60-614
               

               
Cow position:
               
chr28:25249487-25248942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 161
               

               
Conread position:
               
61-373
               

               
Cow position:
               
chr28:18759923-18760228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chr28:5166890-5166654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
70-614
               

               
Cow position:
               
chr28:18354216-18354730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
71-247
               

               
Cow position:
               
chr28:7776379-7776560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
71-465
               

               
Cow position:
               
chr28:8408846-8408458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 24
               

               
Conread position:
               
71-507
               

               
Cow position:
               
chr28:26685233-26684796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 30
               

               
Conread position:
               
71-612
               

               
Cow position:
               
chr28:32174751-32174225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
73-411
               

               
Cow position:
               
chr28:11817844-11818184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
73-611
               

               
Cow position:
               
chr28:14235066-14234562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 17
               

               
Conread position:
               
75-419
               

               
Cow position:
               
chr28:4098943-4098614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
312, 142
               

               
Conread position:
               
77-445
               

               
Cow position:
               
chr28:13176573-13176936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
82-204
               

               
Cow position:
               
chr28:23834511-23834389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chr28:7156942-7156791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
83-388
               

               
Cow position:
               
chr28:14512638-14512325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 223
               

               
Conread position:
               
84-212
               

               
Cow position:
               
chr28:5867825-5867703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
84-278
               

               
Cow position:
               
chr28:25677237-25677434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
84-479
               

               
Cow position:
               
chr28:31109900-31110296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 135
               

               
Conread position:
               
84-534
               

               
Cow position:
               
chr28:14934062-14933616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 129
               

               
Conread position:
               
84-614
               

               
Cow position:
               
chr28:21380983-21380458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 17
               

               
Conread position:
               
89-437
               

               
Cow position:
               
chr28:34636765-34636429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
89-447
               

               
Cow position:
               
chr28:21502496-21502136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
89-611
               

               
Cow position:
               
chr28:4536559-4536058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 152
               

               
Conread position:
               
90-247
               

               
Cow position:
               
chr28:7805324-7805481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
132, 100
               

               
Conread position:
               
90-255
               

               
Cow position:
               
chr28:4765774-4765611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
90-285
               

               
Cow position:
               
chr28:30865515-30865325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
90-341
               

               
Cow position:
               
chr28:18186654-18186403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
131, 104
               

               
Conread position:
               
90-341
               

               
Cow position:
               
chr28:33285013-33285263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 6
               

               
Conread position:
               
90-355
               

               
Cow position:
               
chr28:32365942-32365681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 119
               

               
Conread position:
               
90-438
               

               
Cow position:
               
chr28:10172319-10172664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
254, 36
               

               
Conread position:
               
90-444
               

               
Cow position:
               
chr28:2862966-2862605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 147
               

               
Conread position:
               
90-445
               

               
Cow position:
               
chr28:4841292-4841654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
90-445
               

               
Cow position:
               
chr28:21873856-21873515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
190, 8
               

               
Conread position:
               
90-524
               

               
Cow position:
               
chr28:23676236-23675812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 127
               

               
Conread position:
               
90-608
               

               
Cow position:
               
chr28:25564181-25563660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 6
               

               
Conread position:
               
90-610
               

               
Cow position:
               
chr28:7865427-7864909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 217
               

               
Conread position:
               
90-612
               

               
Cow position:
               
chr28:8022005-8022535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 44
               

               
Conread position:
               
90-614
               

               
Cow position:
               
chr28:11786619-11787132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
90-614
               

               
Cow position:
               
chr28:13693846-13693311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 6
               

               
Conread position:
               
90-614
               

               
Cow position:
               
chr28:21598154-21598679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 120
               

               
Conread position:
               
90-614
               

               
Cow position:
               
chr28:26922270-26922802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 124
               

               
Conread position:
               
92-450
               

               
Cow position:
               
chr28:33256687-33256327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
189, 80
               

               
Conread position:
               
92-481
               

               
Cow position:
               
chr28:7228292-7228677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 58
               

               
Conread position:
               
92-541
               

               
Cow position:
               
chr28:4215471-4215017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 125
               

               
Conread position:
               
92-548
               

               
Cow position:
               
chr28:3187188-3187649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 80
               

               
Conread position:
               
92-562
               

               
Cow position:
               
chr28:9268203-9267726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 164
               

               
Conread position:
               
92-570
               

               
Cow position:
               
chr28:2089596-2089115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
92-580
               

               
Cow position:
               
chr28:12651702-12651211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
92-596
               

               
Cow position:
               
chr28:23721426-23720935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 59
               

               
Conread position:
               
92-613
               

               
Cow position:
               
chr28:32304896-32305423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
92-614
               

               
Cow position:
               
chr28:11752043-11752573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 113
               

               
Conread position:
               
93-361
               

               
Cow position:
               
chr28:23668686-23668954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
95-614
               

               
Cow position:
               
chr28:2814416-2814923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
96-295
               

               
Cow position:
               
chr28:5297370-5297176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
177, 54
               

               
Conread position:
               
96-435
               

               
Cow position:
               
chr28:25283286-25282960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 49
               

               
Conread position:
               
100-587
               

               
Cow position:
               
chr28:30809577-30809087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 67
               

               
Conread position:
               
103-446
               

               
Cow position:
               
chr28:30812802-30812453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
109-439
               

               
Cow position:
               
chr28:25307034-25306697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
110-440
               

               
Cow position:
               
chr28:13607976-13607633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
112-307
               

               
Cow position:
               
chr28:3726960-3726766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 37
               

               
Conread position:
               
112-612
               

               
Cow position:
               
chr28:28798222-28798717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
114-340
               

               
Cow position:
               
chr28:15577188-15577410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
116-517
               

               
Cow position:
               
chr28:8382410-8382008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
116, 60
               

               
Conread position:
               
116-609
               

               
Cow position:
               
chr28:1810670-1811162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
116-612
               

               
Cow position:
               
chr28:22253858-22254361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
116-613
               

               
Cow position:
               
chr28:5941819-5941317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 56
               

               
Conread position:
               
116-613
               

               
Cow position:
               
chr28:22208458-22208952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
117-613
               

               
Cow position:
               
chr28:26782171-26781658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chr28:17235667-17235894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
161, 44
               

               
Conread position:
               
119-526
               

               
Cow position:
               
chr28:7548989-7549400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 91
               

               
Conread position:
               
121-554
               

               
Cow position:
               
chr28:14675577-14675141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
125-258
               

               
Cow position:
               
chr28:21263104-21262967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
125-570
               

               
Cow position:
               
chr28:4588160-4587714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
126-609
               

               
Cow position:
               
chr28:10533873-10534355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 48
               

               
Conread position:
               
127-406
               

               
Cow position:
               
chr28:2737745-2738030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
153, 102
               

               
Conread position:
               
127-613
               

               
Cow position:
               
chr28:29824504-29824015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
131-398
               

               
Cow position:
               
chr28:3714858-3714591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
174, 95
               

               
Conread position:
               
132-304
               

               
Cow position:
               
chr28:13195435-13195263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
81, 102
               

               
Conread position:
               
135-614
               

               
Cow position:
               
chr28:18717077-18717551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 80
               

               
Conread position:
               
138-611
               

               
Cow position:
               
chr28:22279150-22279607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 112
               

               
Conread position:
               
140-446
               

               
Cow position:
               
chr28:6862002-6861695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 42
               

               
Conread position:
               
140-601
               

               
Cow position:
               
chr28:17365913-17366377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
141-366
               

               
Cow position:
               
chr28:2291675-2291894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
143-258
               

               
Cow position:
               
chr28:2888883-2888767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
146-503
               

               
Cow position:
               
chr28:15008214-15007847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 161
               

               
Conread position:
               
147-369
               

               
Cow position:
               
chr28:22339035-22338822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
93, 111
               

               
Conread position:
               
147-450
               

               
Cow position:
               
chr28:16252815-16253117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
148-611
               

               
Cow position:
               
chr28:17288256-17287807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 58
               

               
Conread position:
               
149-614
               

               
Cow position:
               
chr28:17316904-17316439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 72
               

               
Conread position:
               
150-535
               

               
Cow position:
               
chr28:16407131-16406739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
96, 104
               

               
Conread position:
               
152-322
               

               
Cow position:
               
chr28:33893973-33894141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
152-356
               

               
Cow position:
               
chr28:28903627-28903833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
61, 173
               

               
Conread position:
               
156-353
               

               
Cow position:
               
chr28:33032294-33032103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 141
               

               
Conread position:
               
157-612
               

               
Cow position:
               
chr28:15285509-15285968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
158-388
               

               
Cow position:
               
chr28:25459564-25459325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
159-611
               

               
Cow position:
               
chr28:26269360-26268912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 46
               

               
Conread position:
               
162-427
               

               
Cow position:
               
chr28:19394645-19394390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
143, 113
               

               
Conread position:
               
163-341
               

               
Cow position:
               
chr28:7542057-7542235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
163-580
               

               
Cow position:
               
chr28:8681814-8682241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
163-614
               

               
Cow position:
               
chr28:5552913-5553335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 138
               

               
Conread position:
               
164-438
               

               
Cow position:
               
chr28:28076395-28076654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
166-513
               

               
Cow position:
               
chr28:19222580-19222919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
166-576
               

               
Cow position:
               
chr28:12048687-12049101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
169-356
               

               
Cow position:
               
chr28:14983272-14983087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 48
               

               
Conread position:
               
169-393
               

               
Cow position:
               
chr28:22739811-22739595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
169-453
               

               
Cow position:
               
chr28:6307911-6307628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 48
               

               
Conread position:
               
169-507
               

               
Cow position:
               
chr28:5366128-5366464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
170-285
               

               
Cow position:
               
chr28:20968842-20968955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 45
               

               
Conread position:
               
170-303
               

               
Cow position:
               
chr28:7644472-7644336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
170-369
               

               
Cow position:
               
chr28:118032-118234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
109, 48
               

               
Conread position:
               
170-369
               

               
Cow position:
               
chr28:19024163-19023954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
170-441
               

               
Cow position:
               
chr28:5773654-5773389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 47
               

               
Conread position:
               
170-480
               

               
Cow position:
               
chr28:29455642-29455944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
170-514
               

               
Cow position:
               
chr28:4880246-4880590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
170-558
               

               
Cow position:
               
chr28:23480240-23480630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 46
               

               
Conread position:
               
170-614
               

               
Cow position:
               
chr28:15374805-15375247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 49
               

               
Conread position:
               
171-614
               

               
Cow position:
               
chr28:10478326-10478751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 48
               

               
Conread position:
               
172-507
               

               
Cow position:
               
chr28:2124446-2124120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
172-614
               

               
Cow position:
               
chr28:17029701-17030118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 72
               

               
Conread position:
               
173-465
               

               
Cow position:
               
chr28:7547312-7547629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 46
               

               
Conread position:
               
173-614
               

               
Cow position:
               
chr28:22170694-22171156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 300
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr28:8656732-8656965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
107, 38
               

               
Conread position:
               
174-482
               

               
Cow position:
               
chr28:9390349-9390659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 41
               

               
Conread position:
               
175-522
               

               
Cow position:
               
chr28:7590168-7590517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 40
               

               
Conread position:
               
176-614
               

               
Cow position:
               
chr28:6577654-6577228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 41
               

               
Conread position:
               
177-395
               

               
Cow position:
               
chr28:5103750-5103971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 43
               

               
Conread position:
               
177-470
               

               
Cow position:
               
chr28:26784452-26784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 38
               

               
Conread position:
               
179-614
               

               
Cow position:
               
chr28:23840213-23839788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 120
               

               
Conread position:
               
180-317
               

               
Cow position:
               
chr28:5838547-5838411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
180-521
               

               
Cow position:
               
chr28:30803623-30803270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
185-614
               

               
Cow position:
               
chr28:31971750-31972181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
189-614
               

               
Cow position:
               
chr28:16441378-16440973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
194-409
               

               
Cow position:
               
chr28:13447692-13447487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
196-357
               

               
Cow position:
               
chr28:3105242-3105074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
198-572
               

               
Cow position:
               
chr28:6051726-6051331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
87, 53
               

               
Conread position:
               
201-614
               

               
Cow position:
               
chr28:16214911-16215322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
205-590
               

               
Cow position:
               
chr28:30978262-30977884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
205-614
               

               
Cow position:
               
chr28:34082031-34082441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
206-446
               

               
Cow position:
               
chr28:16243774-16244017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 159
               

               
Conread position:
               
206-614
               

               
Cow position:
               
chr28:34150541-34150966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
19, 282
               

               
Conread position:
               
209-599
               

               
Cow position:
               
chr28:13356594-13356991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 166
               

               
Conread position:
               
209-608
               

               
Cow position:
               
chr28:10642035-10642442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
213-425
               

               
Cow position:
               
chr28:5658531-5658317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
215-614
               

               
Cow position:
               
chr28:11451488-11451900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
217-450
               

               
Cow position:
               
chr28:24996615-24996849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 76
               

               
Conread position:
               
217-614
               

               
Cow position:
               
chr28:29392985-29392574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
218-440
               

               
Cow position:
               
chr28:13241855-13242076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
219-408
               

               
Cow position:
               
chr28:5188433-5188622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
219-445
               

               
Cow position:
               
chr28:28414645-28414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 202
               

               
Conread position:
               
219-609
               

               
Cow position:
               
chr28:2279695-2280086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 6
               

               
Conread position:
               
221-437
               

               
Cow position:
               
chr28:9108416-9108201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 84
               

               
Conread position:
               
221-537
               

               
Cow position:
               
chr28:23231095-23231414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
223-422
               

               
Cow position:
               
chr28:3077957-3077759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 73
               

               
Conread position:
               
224-551
               

               
Cow position:
               
chr28:17738105-17738441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 290
               

               
Conread position:
               
228-506
               

               
Cow position:
               
chr28:10888627-10888345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
235-576
               

               
Cow position:
               
chr28:12458117-12457769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
248-610
               

               
Cow position:
               
chr28:20759977-20760345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
254-348
               

               
Cow position:
               
chr28:19015347-19015442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
261-448
               

               
Cow position:
               
chr28:32813064-32813259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
20, 130
               

               
Conread position:
               
266-614
               

               
Cow position:
               
chr28:16388556-16388225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
268-477
               

               
Cow position:
               
chr28:16450780-16450980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
270-600
               

               
Cow position:
               
chr28:3480193-3479853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
278-613
               

               
Cow position:
               
chr28:6047963-6047621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
278-614
               

               
Cow position:
               
chr28:10296111-10295765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 191
               

               
Conread position:
               
283-612
               

               
Cow position:
               
chr28:5371000-5371332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 157
               

               
Conread position:
               
284-446
               

               
Cow position:
               
chr28:31415522-31415685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
284-614
               

               
Cow position:
               
chr28:18180228-18180559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 157
               

               
Conread position:
               
286-614
               

               
Cow position:
               
chr28:4458771-4458443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
288-412
               

               
Cow position:
               
chr28:8628873-8629001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
291-600
               

               
Cow position:
               
chr28:23111838-23111524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
52, 183
               

               
Conread position:
               
294-432
               

               
Cow position:
               
chr28:7389224-7389081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
298-432
               

               
Cow position:
               
chr28:13902066-13902203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
298-614
               

               
Cow position:
               
chr28:11356026-11356360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
298-614
               

               
Cow position:
               
chr28:30967358-30967035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 96
               

               
Conread position:
               
299-430
               

               
Cow position:
               
chr28:25498608-25498746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
299-614
               

               
Cow position:
               
chr28:7697111-7697429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 94
               

               
Conread position:
               
299-614
               

               
Cow position:
               
chr28:9265242-9264909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
301-614
               

               
Cow position:
               
chr28:12998766-12998445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
145, 81
               

               
Conread position:
               
303-610
               

               
Cow position:
               
chr28:7882698-7882382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 166
               
Show alignments to all cow chromosomes.