Cow genome map
| Conread name: | rpliv0131_d19.y1 | 
| Conread position: | 1-111 | 
| Cow position: | chr3:42933643-42933528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-127 | 
| Cow position: | chr3:29944020-29943888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 1-128 | 
| Cow position: | chr3:20888501-20888632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 89, 108 | 
| Conread position: | 1-137 | 
| Cow position: | chr3:44218928-44218787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-138 | 
| Cow position: | chr3:22078238-22078096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-140 | 
| Cow position: | chr3:42484087-42483945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 89, 14 | 
| Conread position: | 1-141 | 
| Cow position: | chr3:2636774-2636912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 89, 109 | 
| Conread position: | 1-141 | 
| Cow position: | chr3:49787716-49787576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 62, 82 | 
| Conread position: | 1-141 | 
| Cow position: | chr3:53552824-53552962 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 1-142 | 
| Cow position: | chr3:74515176-74515321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 80, 51 | 
| Conread position: | 1-143 | 
| Cow position: | chr3:59699491-59699635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 1-147 | 
| Cow position: | chr3:3453742-3453591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-148 | 
| Cow position: | chr3:68624379-68624228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 89, 58 | 
| Conread position: | 1-153 | 
| Cow position: | chr3:64909935-64910090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 1-156 | 
| Cow position: | chr3:32248174-32248014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 1-158 | 
| Cow position: | chr3:5003792-5003634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 89, 69 | 
| Conread position: | 1-158 | 
| Cow position: | chr3:17531576-17531737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 89, 71 | 
| Conread position: | 1-159 | 
| Cow position: | chr3:4931670-4931841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 1-161 | 
| Cow position: | chr3:635338-635175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 89, 26 | 
| Conread position: | 1-161 | 
| Cow position: | chr3:11027437-11027272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-161 | 
| Cow position: | chr3:24220420-24220580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1-161 | 
| Cow position: | chr3:46259872-46259708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 1-161 | 
| Cow position: | chr3:76300934-76300768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 1-164 | 
| Cow position: | chr3:70333069-70333226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 64, 83 | 
| Conread position: | 1-165 | 
| Cow position: | chr3:6579640-6579480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 88, 14 | 
| Conread position: | 1-165 | 
| Cow position: | chr3:37641486-37641319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 89, 74 | 
| Conread position: | 1-165 | 
| Cow position: | chr3:79398305-79398136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-165 | 
| Cow position: | chr3:81616290-81616459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:2016592-2016428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:19044608-19044773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 89, 120 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:55730306-55730476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:58614624-58614449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:80910757-80910588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 89, 72 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:83934884-83934718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 1-167 | 
| Cow position: | chr3:29234518-29234690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 64, 16 | 
| Conread position: | 1-167 | 
| Cow position: | chr3:60371144-60370974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 89, 28 | 
| Conread position: | 1-169 | 
| Cow position: | chr3:15795381-15795209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-169 | 
| Cow position: | chr3:15859222-15859389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 70, 62 | 
| Conread position: | 1-169 | 
| Cow position: | chr3:61680477-61680307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 88, 132 | 
| Conread position: | 1-170 | 
| Cow position: | chr3:35802776-35802952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 1-170 | 
| Cow position: | chr3:59317860-59317691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 77, 55 | 
| Conread position: | 1-170 | 
| Cow position: | chr3:65022463-65022283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 1-170 | 
| Cow position: | chr3:78258590-78258766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 1-172 | 
| Cow position: | chr3:59885691-59885527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 1-172 | 
| Cow position: | chr3:83812438-83812259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 62, 154 | 
| Conread position: | 1-172 | 
| Cow position: | chr3:84154565-84154402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 1-173 | 
| Cow position: | chr3:76168469-76168646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-175 | 
| Cow position: | chr3:6265950-6265769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 1-175 | 
| Cow position: | chr3:25735743-25735922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-176 | 
| Cow position: | chr3:25702171-25702359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 1-176 | 
| Cow position: | chr3:80173159-80172982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 89, 75 | 
| Conread position: | 1-177 | 
| Cow position: | chr3:20158234-20158050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 1-177 | 
| Cow position: | chr3:28884002-28884179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 91, 57 | 
| Conread position: | 1-177 | 
| Cow position: | chr3:62370217-62370037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 89, 139 | 
| Conread position: | 1-178 | 
| Cow position: | chr3:22899571-22899762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 89, 74 | 
| Conread position: | 1-178 | 
| Cow position: | chr3:59681747-59681923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 89, 51 | 
| Conread position: | 1-179 | 
| Cow position: | chr3:4518024-4518198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 87, 57 | 
| Conread position: | 1-179 | 
| Cow position: | chr3:23037348-23037527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 89, 35 | 
| Conread position: | 1-179 | 
| Cow position: | chr3:31793721-31793904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 1-179 | 
| Cow position: | chr3:41366540-41366730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 1-179 | 
| Cow position: | chr3:60186311-60186125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 88, 74 | 
| Conread position: | 1-179 | 
| Cow position: | chr3:62789790-62789974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 75, 176 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:986175-985993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:9718089-9718272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 86, 169 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:12178221-12178034 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 70, 142 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:24304465-24304646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 56, 95 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:28323370-28323194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 160, 65 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:43388965-43389149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:45744070-45743886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 80, 58 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:58101835-58101658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 59, 82 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:59947828-59947644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:61023860-61024044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:63860450-63860632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 89, 56 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:70402798-70402623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 1-181 | 
| Cow position: | chr3:4271525-4271350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 1-181 | 
| Cow position: | chr3:21694387-21694203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 75, 41 | 
| Conread position: | 1-181 | 
| Cow position: | chr3:31115118-31115292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 68, 83 | 
| Conread position: | 1-181 | 
| Cow position: | chr3:51150290-51150106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 75, 8 | 
| Conread position: | 1-181 | 
| Cow position: | chr3:74127340-74127525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 66, 149 | 
| Conread position: | 1-181 | 
| Cow position: | chr3:82195644-82195464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 89, 27 | 
| Conread position: | 1-182 | 
| Cow position: | chr3:12669299-12669113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 56, 126 | 
| Conread position: | 1-182 | 
| Cow position: | chr3:75966622-75966804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 89, 61 | 
| Conread position: | 1-182 | 
| Cow position: | chr3:84807166-84807351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 88, 21 | 
| Conread position: | 1-183 | 
| Cow position: | chr3:18699948-18700135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-184 | 
| Cow position: | chr3:79893336-79893522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 89, 74 | 
| Conread position: | 1-185 | 
| Cow position: | chr3:621601-621418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 51, 145 | 
| Conread position: | 1-185 | 
| Cow position: | chr3:45314512-45314318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 1-185 | 
| Cow position: | chr3:70756479-70756667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 89, 183 | 
| Conread position: | 1-185 | 
| Cow position: | chr3:76056128-76056311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 89, 61 | 
| Conread position: | 1-187 | 
| Cow position: | chr3:4120211-4120394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 56, 66 | 
| Conread position: | 1-187 | 
| Cow position: | chr3:18479136-18479326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 89, 113 | 
| Conread position: | 1-188 | 
| Cow position: | chr3:20021428-20021240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 89, 55 | 
| Conread position: | 1-188 | 
| Cow position: | chr3:49363267-49363081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 89, 50 | 
| Conread position: | 1-188 | 
| Cow position: | chr3:78071632-78071821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 69, 89 | 
| Conread position: | 1-190 | 
| Cow position: | chr3:26783347-26783536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 53, 126 | 
| Conread position: | 1-190 | 
| Cow position: | chr3:43895903-43896090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 77, 61 | 
| Conread position: | 1-191 | 
| Cow position: | chr3:48483338-48483146 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 89, 14 | 
| Conread position: | 1-193 | 
| Cow position: | chr3:44960105-44959908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-194 | 
| Cow position: | chr3:18831578-18831386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 138, 72 | 
| Conread position: | 1-194 | 
| Cow position: | chr3:28902602-28902794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 89, 55 | 
| Conread position: | 1-194 | 
| Cow position: | chr3:42967232-42967413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 1-195 | 
| Cow position: | chr3:14517921-14518115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 76, 46 | 
| Conread position: | 1-196 | 
| Cow position: | chr3:653919-654119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-196 | 
| Cow position: | chr3:83770894-83770694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 1-197 | 
| Cow position: | chr3:72255258-72255457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 89, 110 | 
| Conread position: | 1-197 | 
| Cow position: | chr3:84137654-84137853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 88, 51 | 
| Conread position: | 1-199 | 
| Cow position: | chr3:6728161-6728370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 1-199 | 
| Cow position: | chr3:58452205-58452008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 152, 0 | 
| Conread position: | 1-200 | 
| Cow position: | chr3:84928267-84928062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 1-201 | 
| Cow position: | chr3:54905766-54905576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 1-202 | 
| Cow position: | chr3:22888854-22889060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 75, 39 | 
| Conread position: | 1-202 | 
| Cow position: | chr3:23640499-23640303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 1-202 | 
| Cow position: | chr3:28896861-28897063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 89, 74 | 
| Conread position: | 1-203 | 
| Cow position: | chr3:15973730-15973522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 0 | 
| Conread position: | 1-204 | 
| Cow position: | chr3:52457069-52456873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 99, 14 | 
| Conread position: | 1-204 | 
| Cow position: | chr3:82366289-82366084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 89, 58 | 
| Conread position: | 1-205 | 
| Cow position: | chr3:11229211-11229411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 89, 16 | 
| Conread position: | 1-206 | 
| Cow position: | chr3:5703336-5703131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 86, 116 | 
| Conread position: | 1-208 | 
| Cow position: | chr3:3584500-3584298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 93, 57 | 
| Conread position: | 1-208 | 
| Cow position: | chr3:13882358-13882570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 76, 132 | 
| Conread position: | 1-208 | 
| Cow position: | chr3:29334250-29334465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-208 | 
| Cow position: | chr3:49996557-49996772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-208 | 
| Cow position: | chr3:56704150-56704370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 1-209 | 
| Cow position: | chr3:53083823-53084038 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 76, 66 | 
| Conread position: | 1-210 | 
| Cow position: | chr3:1028487-1028697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 89, 173 | 
| Conread position: | 1-210 | 
| Cow position: | chr3:4071609-4071814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 88, 113 | 
| Conread position: | 1-210 | 
| Cow position: | chr3:23132008-23132220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 64, 85 | 
| Conread position: | 1-211 | 
| Cow position: | chr3:25904879-25905101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 1-211 | 
| Cow position: | chr3:40100569-40100770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 203, 51 | 
| Conread position: | 1-212 | 
| Cow position: | chr3:11281929-11281713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 1-212 | 
| Cow position: | chr3:39988092-39988289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 208, 69 | 
| Conread position: | 1-213 | 
| Cow position: | chr3:23753644-23753447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 1-213 | 
| Cow position: | chr3:71423409-71423605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 1-213 | 
| Cow position: | chr3:74787585-74787378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 80, 5 | 
| Conread position: | 1-214 | 
| Cow position: | chr3:5040143-5040362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 65, 156 | 
| Conread position: | 1-214 | 
| Cow position: | chr3:12090837-12090618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 75, 126 | 
| Conread position: | 1-214 | 
| Cow position: | chr3:39996733-39996946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 144, 19 | 
| Conread position: | 1-214 | 
| Cow position: | chr3:72027799-72027580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 89, 138 | 
| Conread position: | 1-214 | 
| Cow position: | chr3:81234548-81234334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 91, 53 | 
| Conread position: | 1-215 | 
| Cow position: | chr3:6182072-6182277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 76, 50 | 
| Conread position: | 1-215 | 
| Cow position: | chr3:26337856-26338083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 1-218 | 
| Cow position: | chr3:31804610-31804826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 151, 82 | 
| Conread position: | 1-219 | 
| Cow position: | chr3:2638093-2637866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 1-219 | 
| Cow position: | chr3:74644720-74644497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 92, 174 | 
| Conread position: | 1-224 | 
| Cow position: | chr3:13240913-13241141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 89, 206 | 
| Conread position: | 1-228 | 
| Cow position: | chr3:72745395-72745632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 1-229 | 
| Cow position: | chr3:27082881-27083121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 86, 66 | 
| Conread position: | 1-230 | 
| Cow position: | chr3:9025922-9026157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 20, 132 | 
| Conread position: | 1-232 | 
| Cow position: | chr3:39247872-39248093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 126, 14 | 
| Conread position: | 1-233 | 
| Cow position: | chr3:3275755-3275525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 138, 67 | 
| Conread position: | 1-233 | 
| Cow position: | chr3:35075032-35074811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 1-237 | 
| Cow position: | chr3:15160677-15160450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 1-238 | 
| Cow position: | chr3:14547159-14546924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 66 | 
| Conread position: | 1-241 | 
| Cow position: | chr3:56483661-56483432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 165, 51 | 
| Conread position: | 1-241 | 
| Cow position: | chr3:76270048-76269817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 76, 57 | 
| Conread position: | 1-242 | 
| Cow position: | chr3:5707050-5707295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 84, 206 | 
| Conread position: | 1-242 | 
| Cow position: | chr3:47316218-47316461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 77, 160 | 
| Conread position: | 1-243 | 
| Cow position: | chr3:23203069-23203317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 117 | 
| Conread position: | 1-243 | 
| Cow position: | chr3:40145627-40145385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 196 | 
| Conread position: | 1-243 | 
| Cow position: | chr3:63845100-63844847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 1-244 | 
| Cow position: | chr3:66014478-66014235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 9, 152 | 
| Conread position: | 1-244 | 
| Cow position: | chr3:75608648-75608414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 214, 63 | 
| Conread position: | 1-246 | 
| Cow position: | chr3:19682866-19682607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 1-247 | 
| Cow position: | chr3:31349948-31350191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 1-247 | 
| Cow position: | chr3:48459169-48459418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 1-247 | 
| Cow position: | chr3:51609024-51609272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 176 | 
| Conread position: | 1-247 | 
| Cow position: | chr3:53703787-53704052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 1-247 | 
| Cow position: | chr3:64196985-64196738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 1-248 | 
| Cow position: | chr3:39605853-39606109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 63, 226 | 
| Conread position: | 1-251 | 
| Cow position: | chr3:10841976-10841723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 84, 219 | 
| Conread position: | 1-253 | 
| Cow position: | chr3:21866878-21867128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 88, 42 | 
| Conread position: | 1-256 | 
| Cow position: | chr3:26792614-26792379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 1-261 | 
| Cow position: | chr3:23804662-23804417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 89, 16 | 
| Conread position: | 1-263 | 
| Cow position: | chr3:75238620-75238356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 220 | 
| Conread position: | 1-267 | 
| Cow position: | chr3:22165255-22165523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 89, 69 | 
| Conread position: | 1-268 | 
| Cow position: | chr3:31361583-31361312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 68, 51 | 
| Conread position: | 1-270 | 
| Cow position: | chr3:65019693-65019974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 21, 229 | 
| Conread position: | 1-271 | 
| Cow position: | chr3:73837558-73837826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 82, 167 | 
| Conread position: | 1-273 | 
| Cow position: | chr3:15950757-15951023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 22, 62 | 
| Conread position: | 1-273 | 
| Cow position: | chr3:18059864-18059590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 69 | 
| Conread position: | 1-279 | 
| Cow position: | chr3:58527537-58527280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 1-283 | 
| Cow position: | chr3:45700962-45700684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 85, 65 | 
| Conread position: | 1-288 | 
| Cow position: | chr3:5889285-5889573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 129, 81 | 
| Conread position: | 1-289 | 
| Cow position: | chr3:73299225-73298958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 278, 14 | 
| Conread position: | 1-293 | 
| Cow position: | chr3:5696569-5696862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 62, 38 | 
| Conread position: | 1-293 | 
| Cow position: | chr3:30266534-30266829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 87, 46 | 
| Conread position: | 1-296 | 
| Cow position: | chr3:18180123-18179810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 1-297 | 
| Cow position: | chr3:74846565-74846847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 213, 61 | 
| Conread position: | 1-298 | 
| Cow position: | chr3:13380118-13380424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 66 | 
| Conread position: | 1-298 | 
| Cow position: | chr3:61116711-61116995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 234, 51 | 
| Conread position: | 1-299 | 
| Cow position: | chr3:76024663-76024381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 89, 16 | 
| Conread position: | 1-300 | 
| Cow position: | chr3:3649079-3649355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 103, 50 | 
| Conread position: | 1-300 | 
| Cow position: | chr3:17235044-17235348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 52, 177 | 
| Conread position: | 1-300 | 
| Cow position: | chr3:76156146-76155846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 76, 91 | 
| Conread position: | 1-301 | 
| Cow position: | chr3:60264562-60264856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 279, 5 | 
| Conread position: | 1-301 | 
| Cow position: | chr3:74939741-74939417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 51, 109 | 
| Conread position: | 1-303 | 
| Cow position: | chr3:1517353-1517656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 51 | 
| Conread position: | 1-303 | 
| Cow position: | chr3:60389912-60389625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 28, 65 | 
| Conread position: | 1-303 | 
| Cow position: | chr3:73820205-73820512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 14 | 
| Conread position: | 1-304 | 
| Cow position: | chr3:3656675-3656366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 14 | 
| Conread position: | 1-304 | 
| Cow position: | chr3:33329994-33329671 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 1-304 | 
| Cow position: | chr3:34871728-34871425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 120 | 
| Conread position: | 1-304 | 
| Cow position: | chr3:48900170-48900481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 158 | 
| Conread position: | 1-304 | 
| Cow position: | chr3:58317783-58318097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 1-306 | 
| Cow position: | chr3:47417411-47417711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 89, 156 | 
| Conread position: | 1-307 | 
| Cow position: | chr3:48468336-48468033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 89, 208 | 
| Conread position: | 1-308 | 
| Cow position: | chr3:3036781-3037073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 103, 46 | 
| Conread position: | 1-308 | 
| Cow position: | chr3:6299618-6299321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 86, 17 | 
| Conread position: | 1-308 | 
| Cow position: | chr3:22221486-22221173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 56 | 
| Conread position: | 1-309 | 
| Cow position: | chr3:12978455-12978764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 128 | 
| Conread position: | 1-309 | 
| Cow position: | chr3:79196923-79196612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 57, 76 | 
| Conread position: | 1-313 | 
| Cow position: | chr3:24468224-24468530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 19 | 
| Conread position: | 1-314 | 
| Cow position: | chr3:45667183-45667505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 50 | 
| Conread position: | 1-314 | 
| Cow position: | chr3:55177591-55177905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 208, 67 | 
| Conread position: | 1-315 | 
| Cow position: | chr3:70333809-70334118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 89 | 
| Conread position: | 1-317 | 
| Cow position: | chr3:81440000-81439679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 84, 30 | 
| Conread position: | 1-320 | 
| Cow position: | chr3:15443566-15443890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 170 | 
| Conread position: | 1-327 | 
| Cow position: | chr3:48072726-48073039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 74, 16 | 
| Conread position: | 1-330 | 
| Cow position: | chr3:2648348-2648686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 80 | 
| Conread position: | 1-330 | 
| Cow position: | chr3:71478752-71478423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 19 | 
| Conread position: | 1-334 | 
| Cow position: | chr3:23920266-23920602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 219 | 
| Conread position: | 1-337 | 
| Cow position: | chr3:19793057-19792717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 213, 16 | 
| Conread position: | 1-337 | 
| Cow position: | chr3:54506866-54506534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 69, 91 | 
| Conread position: | 1-337 | 
| Cow position: | chr3:62046831-62046487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 206 | 
| Conread position: | 1-341 | 
| Cow position: | chr3:70761963-70762302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 60, 146 | 
| Conread position: | 1-341 | 
| Cow position: | chr3:76922513-76922842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 22, 70 | 
| Conread position: | 1-342 | 
| Cow position: | chr3:57274218-57273886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 28 | 
| Conread position: | 1-342 | 
| Cow position: | chr3:75853175-75853511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 213, 20 | 
| Conread position: | 1-346 | 
| Cow position: | chr3:52487789-52487450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 54, 179 | 
| Conread position: | 1-346 | 
| Cow position: | chr3:58764926-58765262 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 196, 54 | 
| Conread position: | 1-347 | 
| Cow position: | chr3:12705387-12705731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 279, 57 | 
| Conread position: | 1-347 | 
| Cow position: | chr3:23105205-23105551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 223, 90 | 
| Conread position: | 1-347 | 
| Cow position: | chr3:53318570-53318218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 114 | 
| Conread position: | 1-347 | 
| Cow position: | chr3:74079478-74079824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 137 | 
| Conread position: | 1-348 | 
| Cow position: | chr3:55434491-55434145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 85, 184 | 
| Conread position: | 1-348 | 
| Cow position: | chr3:75687277-75687625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 20 | 
| Conread position: | 1-356 | 
| Cow position: | chr3:55318738-55319097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 74 | 
| Conread position: | 1-358 | 
| Cow position: | chr3:83699708-83700070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 89, 122 | 
| Conread position: | 1-360 | 
| Cow position: | chr3:54100553-54100915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 224 | 
| Conread position: | 1-365 | 
| Cow position: | chr3:20841719-20842059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 84 | 
| Conread position: | 1-367 | 
| Cow position: | chr3:56612522-56612154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 21 | 
| Conread position: | 1-369 | 
| Cow position: | chr3:4319879-4319503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 224 | 
| Conread position: | 1-369 | 
| Cow position: | chr3:25477952-25477605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 278, 68 | 
| Conread position: | 1-369 | 
| Cow position: | chr3:45211464-45211088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 242 | 
| Conread position: | 1-369 | 
| Cow position: | chr3:76713152-76713529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 173 | 
| Conread position: | 1-370 | 
| Cow position: | chr3:38035428-38035801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 103 | 
| Conread position: | 1-370 | 
| Cow position: | chr3:67520016-67520384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 61 | 
| Conread position: | 1-370 | 
| Cow position: | chr3:74754475-74754121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 60, 72 | 
| Conread position: | 1-372 | 
| Cow position: | chr3:7662017-7661640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 151 | 
| Conread position: | 1-378 | 
| Cow position: | chr3:38828911-38828551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 280, 32 | 
| Conread position: | 1-380 | 
| Cow position: | chr3:83215429-83215032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 1-387 | 
| Cow position: | chr3:53836550-53836913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 243, 83 | 
| Conread position: | 1-392 | 
| Cow position: | chr3:67930010-67930411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 139 | 
| Conread position: | 1-394 | 
| Cow position: | chr3:189035-188624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 1-396 | 
| Cow position: | chr3:17134491-17134102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 67 | 
| Conread position: | 1-398 | 
| Cow position: | chr3:22232508-22232882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 279, 17 | 
| Conread position: | 1-398 | 
| Cow position: | chr3:81087476-81087848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 150 | 
| Conread position: | 1-406 | 
| Cow position: | chr3:76267814-76268225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 68 | 
| Conread position: | 1-407 | 
| Cow position: | chr3:43233663-43233255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 280, 67 | 
| Conread position: | 1-407 | 
| Cow position: | chr3:44932672-44932260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 58 | 
| Conread position: | 1-410 | 
| Cow position: | chr3:52651920-52652325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 71 | 
| Conread position: | 1-412 | 
| Cow position: | chr3:18725503-18725887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 279, 17 | 
| Conread position: | 1-412 | 
| Cow position: | chr3:26970971-26970572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 11 | 
| Conread position: | 1-416 | 
| Cow position: | chr3:18687061-18686660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 279, 70 | 
| Conread position: | 1-416 | 
| Cow position: | chr3:56476834-56476425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 210, 34 | 
| Conread position: | 1-417 | 
| Cow position: | chr3:54881916-54881498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 205, 51 | 
| Conread position: | 1-417 | 
| Cow position: | chr3:71238310-71237899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 62 | 
| Conread position: | 1-420 | 
| Cow position: | chr3:51233944-51234357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 82 | 
| Conread position: | 1-424 | 
| Cow position: | chr3:73395275-73394851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 38 | 
| Conread position: | 1-426 | 
| Cow position: | chr3:83454997-83455419 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 83, 10 | 
| Conread position: | 1-429 | 
| Cow position: | chr3:13301689-13302126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 44 | 
| Conread position: | 1-431 | 
| Cow position: | chr3:69416618-69417061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 220 | 
| Conread position: | 1-434 | 
| Cow position: | chr3:7330978-7331394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 279, 14 | 
| Conread position: | 1-437 | 
| Cow position: | chr3:5374469-5374057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 13 | 
| Conread position: | 1-438 | 
| Cow position: | chr3:78443407-78443842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 166 | 
| Conread position: | 1-439 | 
| Cow position: | chr3:38864278-38863833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 44 | 
| Conread position: | 1-439 | 
| Cow position: | chr3:49482554-49482984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 19 | 
| Conread position: | 1-439 | 
| Cow position: | chr3:75158515-75158085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 14 | 
| Conread position: | 1-440 | 
| Cow position: | chr3:17456107-17456550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 216 | 
| Conread position: | 1-441 | 
| Cow position: | chr3:16333964-16333517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 217 | 
| Conread position: | 1-441 | 
| Cow position: | chr3:66900567-66901024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 10 | 
| Conread position: | 1-443 | 
| Cow position: | chr3:52419107-52418681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 73, 157 | 
| Conread position: | 1-443 | 
| Cow position: | chr3:73764055-73764477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 66 | 
| Conread position: | 1-444 | 
| Cow position: | chr3:21081220-21081670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 14 | 
| Conread position: | 1-444 | 
| Cow position: | chr3:68707862-68708286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 279, 82 | 
| Conread position: | 1-444 | 
| Cow position: | chr3:68880971-68881394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 279, 82 | 
| Conread position: | 1-445 | 
| Cow position: | chr3:13329633-13330058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 62 | 
| Conread position: | 1-445 | 
| Cow position: | chr3:15159192-15158755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 14 | 
| Conread position: | 1-445 | 
| Cow position: | chr3:23471303-23471754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 211, 81 | 
| Conread position: | 1-445 | 
| Cow position: | chr3:54739740-54740157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 16 | 
| Conread position: | 1-445 | 
| Cow position: | chr3:59333918-59333489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 19, 28 | 
| Conread position: | 1-445 | 
| Cow position: | chr3:78945662-78946125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 196 | 
| Conread position: | 1-446 | 
| Cow position: | chr3:29813386-29812957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 52 | 
| Conread position: | 1-447 | 
| Cow position: | chr3:73467786-73467331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 14 | 
| Conread position: | 1-448 | 
| Cow position: | chr3:71161948-71161505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 13 | 
| Conread position: | 1-449 | 
| Cow position: | chr3:64280778-64281226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 64 | 
| Conread position: | 1-455 | 
| Cow position: | chr3:74533494-74533051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 279, 61 | 
| Conread position: | 1-459 | 
| Cow position: | chr3:30463016-30463466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 280, 30 | 
| Conread position: | 1-460 | 
| Cow position: | chr3:72474082-72473606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 346 | 
| Conread position: | 1-462 | 
| Cow position: | chr3:53910266-53909811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 14 | 
| Conread position: | 1-465 | 
| Cow position: | chr3:27274687-27274233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 71 | 
| Conread position: | 1-469 | 
| Cow position: | chr3:59391965-59392412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 126 | 
| Conread position: | 1-469 | 
| Cow position: | chr3:70676391-70675907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 226 | 
| Conread position: | 1-480 | 
| Cow position: | chr3:65058859-65058381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 52 | 
| Conread position: | 1-485 | 
| Cow position: | chr3:49679294-49678796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 73 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:59597333-59596876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 69 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:76138619-76138161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 94 | 
| Conread position: | 1-489 | 
| Cow position: | chr3:31309194-31309692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 14 | 
| Conread position: | 1-493 | 
| Cow position: | chr3:78077350-78076858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 69 | 
| Conread position: | 1-501 | 
| Cow position: | chr3:2392809-2393314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 57 | 
| Conread position: | 1-503 | 
| Cow position: | chr3:17221973-17222495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 268 | 
| Conread position: | 1-503 | 
| Cow position: | chr3:77582266-77581777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 66 | 
| Conread position: | 1-507 | 
| Cow position: | chr3:70896199-70895699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 35 | 
| Conread position: | 1-508 | 
| Cow position: | chr3:80973511-80973005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 96 | 
| Conread position: | 1-509 | 
| Cow position: | chr3:71496969-71497496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 292 | 
| Conread position: | 1-511 | 
| Cow position: | chr3:210482-209970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 268 | 
| Conread position: | 1-516 | 
| Cow position: | chr3:55970675-55970156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 219 | 
| Conread position: | 1-519 | 
| Cow position: | chr3:57764373-57763847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 19 | 
| Conread position: | 1-519 | 
| Cow position: | chr3:68648337-68647800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 541 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 228 | 
| Conread position: | 1-525 | 
| Cow position: | chr3:79884320-79884852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 169 | 
| Conread position: | 1-526 | 
| Cow position: | chr3:60597697-60597187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 70 | 
| Conread position: | 1-529 | 
| Cow position: | chr3:55189590-55190116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 538 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 233 | 
| Conread position: | 1-537 | 
| Cow position: | chr3:18067290-18066756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 550 | 
| Alignm identity: | 429 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 14 | 
| Conread position: | 1-540 | 
| Cow position: | chr3:54781833-54782392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 218 | 
| Conread position: | 1-543 | 
| Cow position: | chr3:11987488-11986947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 216 | 
| Conread position: | 1-544 | 
| Cow position: | chr3:59605002-59604487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 549 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 83 | 
| Conread position: | 1-544 | 
| Cow position: | chr3:68145695-68146209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 14 | 
| Conread position: | 1-545 | 
| Cow position: | chr3:7763818-7763283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 555 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 138 | 
| Conread position: | 1-553 | 
| Cow position: | chr3:5365825-5365291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 279, 53 | 
| Conread position: | 1-554 | 
| Cow position: | chr3:74500417-74499845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 471 | 
| Conread position: | 1-569 | 
| Cow position: | chr3:20663382-20663948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 165 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:16752094-16752658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 151 | 
| Conread position: | 1-580 | 
| Cow position: | chr3:7337627-7338196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 17 | 
| Conread position: | 1-583 | 
| Cow position: | chr3:56583008-56582416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 105 | 
| Conread position: | 1-584 | 
| Cow position: | chr3:26904259-26903692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 51 | 
| Conread position: | 1-589 | 
| Cow position: | chr3:48241767-48241191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 280, 16 | 
| Conread position: | 1-589 | 
| Cow position: | chr3:83491240-83490654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 603 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 71 | 
| Conread position: | 1-590 | 
| Cow position: | chr3:20802480-20803058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 214, 80 | 
| Conread position: | 1-592 | 
| Cow position: | chr3:59474280-59473678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 50 | 
| Conread position: | 1-597 | 
| Cow position: | chr3:49118870-49119456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 611 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 139 | 
| Conread position: | 1-601 | 
| Cow position: | chr3:50768839-50768233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 217 | 
| Conread position: | 1-601 | 
| Cow position: | chr3:80740713-80740141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 214, 14 | 
| Conread position: | 1-608 | 
| Cow position: | chr3:2506316-2506928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 123 | 
| Conread position: | 1-609 | 
| Cow position: | chr3:57577856-57577250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 30 | 
| Conread position: | 1-610 | 
| Cow position: | chr3:18393242-18393833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 69 | 
| Conread position: | 1-611 | 
| Cow position: | chr3:55734118-55733491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 109 | 
| Conread position: | 1-611 | 
| Cow position: | chr3:76172522-76173114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 619 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 304, 82 | 
| Conread position: | 1-612 | 
| Cow position: | chr3:10958084-10958662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 14 | 
| Conread position: | 1-612 | 
| Cow position: | chr3:31225582-31225002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 14 | 
| Conread position: | 1-612 | 
| Cow position: | chr3:48363229-48362631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 279, 81 | 
| Conread position: | 1-612 | 
| Cow position: | chr3:54435128-54434520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 619 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 337, 83 | 
| Conread position: | 1-612 | 
| Cow position: | chr3:61169970-61169346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 122 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:2008438-2007818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 179 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:2036464-2035844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 223 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:3032569-3031946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 478 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 60 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:7566261-7566869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 482 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 61 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:11254005-11254601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 220 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:17936687-17937305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 343, 81 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:18459377-18459975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 280, 14 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:20471225-20471825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 40 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:23734929-23735557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 57 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:24872852-24872302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 14 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:28908056-28908677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 439, 66 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:30180243-30179628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 61 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:35883772-35884407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 331 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:48253039-48252440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 617 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 277, 69 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:50614783-50614184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 51 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:51033532-51032890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 21 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:53046498-53047096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 156 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:58540357-58540994 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 140 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:61224589-61225195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 85 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:62998835-62999452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 17 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:64010648-64011275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 643 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 189 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:65237183-65236558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 464 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 55 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:65969334-65968700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 434 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:67929099-67929726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 44 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:68303478-68302857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 644 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 167 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:71231558-71230951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 145 | 
| Conread position: | 1-614 | 
| Cow position: | chr3:82055968-82056565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 199, 50 | 
| Conread position: | 2-126 | 
| Cow position: | chr3:78115431-78115560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 2-143 | 
| Cow position: | chr3:55105987-55106133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 2-148 | 
| Cow position: | chr3:28643570-28643422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 88, 70 | 
| Conread position: | 2-150 | 
| Cow position: | chr3:56754376-56754524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 88, 119 | 
| Conread position: | 2-155 | 
| Cow position: | chr3:67942374-67942532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 2-160 | 
| Cow position: | chr3:44594783-44594623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 83, 147 | 
| Conread position: | 2-166 | 
| Cow position: | chr3:62186317-62186144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 2-179 | 
| Cow position: | chr3:59588803-59588622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 69, 158 | 
| Conread position: | 2-182 | 
| Cow position: | chr3:27246808-27246982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 69, 81 | 
| Conread position: | 2-183 | 
| Cow position: | chr3:47198967-47199151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 90, 15 | 
| Conread position: | 2-191 | 
| Cow position: | chr3:42589258-42589077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 74, 15 | 
| Conread position: | 2-204 | 
| Cow position: | chr3:59828229-59828438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 2-209 | 
| Cow position: | chr3:81923634-81923849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 57, 44 | 
| Conread position: | 2-210 | 
| Cow position: | chr3:16107216-16107408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 2-211 | 
| Cow position: | chr3:59702333-59702120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 71, 148 | 
| Conread position: | 2-218 | 
| Cow position: | chr3:83889408-83889188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 88, 158 | 
| Conread position: | 2-224 | 
| Cow position: | chr3:79272417-79272639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 220, 80 | 
| Conread position: | 2-231 | 
| Cow position: | chr3:2484161-2483932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 27, 62 | 
| Conread position: | 2-240 | 
| Cow position: | chr3:10668720-10668958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 62, 148 | 
| Conread position: | 2-244 | 
| Cow position: | chr3:59299732-59299493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 122, 80 | 
| Conread position: | 2-267 | 
| Cow position: | chr3:3316649-3316918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 58, 144 | 
| Conread position: | 2-273 | 
| Cow position: | chr3:39912528-39912796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 83, 18 | 
| Conread position: | 2-296 | 
| Cow position: | chr3:72342407-72342109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 219 | 
| Conread position: | 2-299 | 
| Cow position: | chr3:17058388-17058678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 88, 55 | 
| Conread position: | 2-299 | 
| Cow position: | chr3:53209848-53210159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 55, 230 | 
| Conread position: | 2-303 | 
| Cow position: | chr3:3889418-3889709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 79 | 
| Conread position: | 2-303 | 
| Cow position: | chr3:79271550-79271865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 45 | 
| Conread position: | 2-308 | 
| Cow position: | chr3:46146570-46146879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 81, 13 | 
| Conread position: | 2-309 | 
| Cow position: | chr3:50615104-50615416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 73, 20 | 
| Conread position: | 2-330 | 
| Cow position: | chr3:48810479-48810805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 223 | 
| Conread position: | 2-337 | 
| Cow position: | chr3:1889947-1890286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 87, 289 | 
| Conread position: | 2-343 | 
| Cow position: | chr3:68616176-68616506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 210, 68 | 
| Conread position: | 2-347 | 
| Cow position: | chr3:54373698-54374046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 220 | 
| Conread position: | 2-356 | 
| Cow position: | chr3:74119271-74119636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 18 | 
| Conread position: | 2-368 | 
| Cow position: | chr3:53875603-53875966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 209 | 
| Conread position: | 2-416 | 
| Cow position: | chr3:3556707-3556287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 217 | 
| Conread position: | 2-429 | 
| Cow position: | chr3:51578165-51578591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 55 | 
| Conread position: | 2-437 | 
| Cow position: | chr3:68627528-68627953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 73 | 
| Conread position: | 2-442 | 
| Cow position: | chr3:3985475-3985047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 83 | 
| Conread position: | 2-443 | 
| Cow position: | chr3:8393499-8393062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 69 | 
| Conread position: | 2-445 | 
| Cow position: | chr3:63180023-63179582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 216 | 
| Conread position: | 2-446 | 
| Cow position: | chr3:29360005-29360422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 341, 49 | 
| Conread position: | 2-450 | 
| Cow position: | chr3:33252733-33253171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 60 | 
| Conread position: | 2-467 | 
| Cow position: | chr3:59610560-59611024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 45 | 
| Conread position: | 2-509 | 
| Cow position: | chr3:75570287-75570782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 40 | 
| Conread position: | 2-609 | 
| Cow position: | chr3:53384121-53384733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 47 | 
| Conread position: | 2-611 | 
| Cow position: | chr3:2025362-2024718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 268 | 
| Conread position: | 2-612 | 
| Cow position: | chr3:2538396-2537805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 60 | 
| Conread position: | 2-612 | 
| Cow position: | chr3:16656326-16656920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 220 | 
| Conread position: | 2-614 | 
| Cow position: | chr3:2675191-2674574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 219 | 
| Conread position: | 2-614 | 
| Cow position: | chr3:9641714-9641093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 60 | 
| Conread position: | 2-614 | 
| Cow position: | chr3:14553031-14552425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 617 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 65 | 
| Conread position: | 2-614 | 
| Cow position: | chr3:14725475-14724843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 510 | 
| Conread position: | 2-614 | 
| Cow position: | chr3:15051793-15052382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 68 | 
| Conread position: | 2-614 | 
| Cow position: | chr3:20996843-20997426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 61 | 
| Conread position: | 2-614 | 
| Cow position: | chr3:29596554-29595917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 18 | 
| Conread position: | 3-141 | 
| Cow position: | chr3:58929374-58929517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 3-149 | 
| Cow position: | chr3:35079347-35079498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 3-156 | 
| Cow position: | chr3:63069203-63069363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 3-167 | 
| Cow position: | chr3:33289920-33290089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 3-168 | 
| Cow position: | chr3:83199671-83199502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 87, 77 | 
| Conread position: | 3-169 | 
| Cow position: | chr3:2258038-2257867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 3-171 | 
| Cow position: | chr3:64800389-64800562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 3-172 | 
| Cow position: | chr3:20065989-20066167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 3-174 | 
| Cow position: | chr3:52845713-52845541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 3-177 | 
| Cow position: | chr3:62312956-62312778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 87, 137 | 
| Conread position: | 3-177 | 
| Cow position: | chr3:73943714-73943892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 82, 36 | 
| Conread position: | 3-177 | 
| Cow position: | chr3:83705377-83705555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 87, 146 | 
| Conread position: | 3-183 | 
| Cow position: | chr3:27286673-27286496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 3-186 | 
| Cow position: | chr3:14589072-14589268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 3-188 | 
| Cow position: | chr3:32317671-32317860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 3-191 | 
| Cow position: | chr3:53604586-53604778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 87, 69 | 
| Conread position: | 3-194 | 
| Cow position: | chr3:18249113-18248917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 3-196 | 
| Cow position: | chr3:7860092-7860290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 3-196 | 
| Cow position: | chr3:19006301-19006104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 3-196 | 
| Cow position: | chr3:81136211-81136016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 78, 14 | 
| Conread position: | 3-201 | 
| Cow position: | chr3:35624385-35624586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 89, 142 | 
| Conread position: | 3-206 | 
| Cow position: | chr3:73525077-73525286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 3-208 | 
| Cow position: | chr3:1011650-1011437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 74, 0 | 
| Conread position: | 3-212 | 
| Cow position: | chr3:40212877-40213086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 81 | 
| Conread position: | 3-212 | 
| Cow position: | chr3:80733692-80733906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 74, 204 | 
| Conread position: | 3-213 | 
| Cow position: | chr3:56948938-56949142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 3-214 | 
| Cow position: | chr3:41874065-41873846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 3-215 | 
| Cow position: | chr3:8181791-8182007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 71, 129 | 
| Conread position: | 3-218 | 
| Cow position: | chr3:80037376-80037589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 3-244 | 
| Cow position: | chr3:71474249-71474491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 88, 56 | 
| Conread position: | 3-247 | 
| Cow position: | chr3:11640894-11640642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 222 | 
| Conread position: | 3-247 | 
| Cow position: | chr3:84174462-84174215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 89, 206 | 
| Conread position: | 3-270 | 
| Cow position: | chr3:57704490-57704214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 87, 65 | 
| Conread position: | 3-279 | 
| Cow position: | chr3:58134526-58134805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 73 | 
| Conread position: | 3-284 | 
| Cow position: | chr3:22668570-22668295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 80, 199 | 
| Conread position: | 3-289 | 
| Cow position: | chr3:14194031-14194307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 216, 65 | 
| Conread position: | 3-290 | 
| Cow position: | chr3:42796360-42796638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 86, 77 | 
| Conread position: | 3-303 | 
| Cow position: | chr3:21014798-21015102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 17 | 
| Conread position: | 3-303 | 
| Cow position: | chr3:79098258-79097961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 83, 122 | 
| Conread position: | 3-308 | 
| Cow position: | chr3:3883662-3883965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 209, 78 | 
| Conread position: | 3-314 | 
| Cow position: | chr3:28648661-28648353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 86, 63 | 
| Conread position: | 3-317 | 
| Cow position: | chr3:15153846-15153537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 60 | 
| Conread position: | 3-324 | 
| Cow position: | chr3:42671691-42671377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 80, 220 | 
| Conread position: | 3-325 | 
| Cow position: | chr3:19793432-19793755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 68 | 
| Conread position: | 3-336 | 
| Cow position: | chr3:58960435-58960763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 245, 60 | 
| Conread position: | 3-339 | 
| Cow position: | chr3:83797665-83798016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 86, 234 | 
| Conread position: | 3-340 | 
| Cow position: | chr3:3913282-3913629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 14 | 
| Conread position: | 3-340 | 
| Cow position: | chr3:42434170-42434512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 82, 30 | 
| Conread position: | 3-341 | 
| Cow position: | chr3:77427535-77427221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 61, 48 | 
| Conread position: | 3-355 | 
| Cow position: | chr3:79824761-79825113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 89, 41 | 
| Conread position: | 3-356 | 
| Cow position: | chr3:22845063-22844720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 82, 126 | 
| Conread position: | 3-366 | 
| Cow position: | chr3:55712589-55712221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 204, 40 | 
| Conread position: | 3-379 | 
| Cow position: | chr3:82175667-82175283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 87, 115 | 
| Conread position: | 3-391 | 
| Cow position: | chr3:22887768-22888148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 82, 219 | 
| Conread position: | 3-417 | 
| Cow position: | chr3:8061278-8060874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 17 | 
| Conread position: | 3-445 | 
| Cow position: | chr3:70334534-70334989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 216 | 
| Conread position: | 3-450 | 
| Cow position: | chr3:66884872-66885331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 76, 54 | 
| Conread position: | 3-453 | 
| Cow position: | chr3:55124127-55124574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 13 | 
| Conread position: | 3-470 | 
| Cow position: | chr3:2518383-2518848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 60 | 
| Conread position: | 3-479 | 
| Cow position: | chr3:57754317-57754800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 53 | 
| Conread position: | 3-482 | 
| Cow position: | chr3:54903725-54903250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 169 | 
| Conread position: | 3-501 | 
| Cow position: | chr3:13577061-13577539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 282, 50 | 
| Conread position: | 3-503 | 
| Cow position: | chr3:34095814-34096293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 74 | 
| Conread position: | 3-504 | 
| Cow position: | chr3:16547828-16547331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 201 | 
| Conread position: | 3-537 | 
| Cow position: | chr3:49460768-49461315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 32 | 
| Conread position: | 3-557 | 
| Cow position: | chr3:13899296-13899850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 126 | 
| Conread position: | 3-557 | 
| Cow position: | chr3:68587176-68586643 (view UCSC Genome Browser custom track) | 
| Alignm length: | 561 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 58 | 
| Conread position: | 3-581 | 
| Cow position: | chr3:17694844-17695425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 160 | 
| Conread position: | 3-585 | 
| Cow position: | chr3:29891248-29891837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 600 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 15 | 
| Conread position: | 3-596 | 
| Cow position: | chr3:59000605-59001177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 61 | 
| Conread position: | 3-607 | 
| Cow position: | chr3:75480156-75479571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 133 | 
| Conread position: | 3-612 | 
| Cow position: | chr3:45882057-45881455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 67 | 
| Conread position: | 3-613 | 
| Cow position: | chr3:39066487-39065879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 17 | 
| Conread position: | 3-614 | 
| Cow position: | chr3:15953924-15954531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 229 | 
| Conread position: | 3-614 | 
| Cow position: | chr3:19711178-19711770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 126 | 
| Conread position: | 3-614 | 
| Cow position: | chr3:25690958-25690338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 229 | 
| Conread position: | 3-614 | 
| Cow position: | chr3:31419853-31419241 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 218 | 
| Conread position: | 3-614 | 
| Cow position: | chr3:60933576-60932977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 224 | 
| Conread position: | 3-614 | 
| Cow position: | chr3:73961536-73962134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 253 | 
| Conread position: | 4-158 | 
| Cow position: | chr3:8975004-8974845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 4-167 | 
| Cow position: | chr3:67737477-67737309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 4-170 | 
| Cow position: | chr3:38817508-38817679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 4-173 | 
| Cow position: | chr3:24924974-24924807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 4-177 | 
| Cow position: | chr3:8775477-8775300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 4-196 | 
| Cow position: | chr3:75222662-75222466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 4-197 | 
| Cow position: | chr3:8813944-8814150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 48, 200 | 
| Conread position: | 4-208 | 
| Cow position: | chr3:5149795-5150005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 4-214 | 
| Cow position: | chr3:29828257-29828472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 4-246 | 
| Cow position: | chr3:36240266-36240020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 81, 14 | 
| Conread position: | 4-246 | 
| Cow position: | chr3:80597884-80597638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 83, 200 | 
| Conread position: | 4-247 | 
| Cow position: | chr3:84250392-84250630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 181, 53 | 
| Conread position: | 4-268 | 
| Cow position: | chr3:83988691-83988425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 70, 11 | 
| Conread position: | 4-279 | 
| Cow position: | chr3:26992730-26992449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 4-339 | 
| Cow position: | chr3:26739267-26739597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 85, 112 | 
| Conread position: | 4-412 | 
| Cow position: | chr3:5044653-5045063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 211 | 
| Conread position: | 4-453 | 
| Cow position: | chr3:72577-72121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 53 | 
| Conread position: | 4-603 | 
| Cow position: | chr3:31055856-31056445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 614 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 17 | 
| Conread position: | 4-614 | 
| Cow position: | chr3:1830416-1831020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 146 | 
| Conread position: | 5-165 | 
| Cow position: | chr3:67966334-67966498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 80, 134 | 
| Conread position: | 5-173 | 
| Cow position: | chr3:70431590-70431417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 47, 121 | 
| Conread position: | 5-180 | 
| Cow position: | chr3:59271987-59271812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 85, 68 | 
| Conread position: | 5-181 | 
| Cow position: | chr3:24516050-24516233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 5-181 | 
| Cow position: | chr3:63202078-63201895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 5-182 | 
| Cow position: | chr3:79730675-79730493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 5-188 | 
| Cow position: | chr3:51329075-51329261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 82, 144 | 
| Conread position: | 5-188 | 
| Cow position: | chr3:63336649-63336462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 82, 134 | 
| Conread position: | 5-191 | 
| Cow position: | chr3:15792252-15792061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 55, 182 | 
| Conread position: | 5-191 | 
| Cow position: | chr3:46271630-46271820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 77, 181 | 
| Conread position: | 5-196 | 
| Cow position: | chr3:55541175-55540977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 76, 0 | 
| Conread position: | 5-209 | 
| Cow position: | chr3:22878743-22878543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 191, 71 | 
| Conread position: | 5-212 | 
| Cow position: | chr3:18855234-18855022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 5-212 | 
| Cow position: | chr3:45822863-45823075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 5-214 | 
| Cow position: | chr3:68599779-68599557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 82, 138 | 
| Conread position: | 5-239 | 
| Cow position: | chr3:80709708-80709948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 5-241 | 
| Cow position: | chr3:27976366-27976606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 45 | 
| Conread position: | 5-246 | 
| Cow position: | chr3:15671997-15672245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 80, 115 | 
| Conread position: | 5-260 | 
| Cow position: | chr3:77081878-77082125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 191, 57 | 
| Conread position: | 5-263 | 
| Cow position: | chr3:59945283-59945024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 81, 210 | 
| Conread position: | 5-272 | 
| Cow position: | chr3:20033991-20034256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 80, 197 | 
| Conread position: | 5-288 | 
| Cow position: | chr3:56678191-56678481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 227 | 
| Conread position: | 5-314 | 
| Cow position: | chr3:11199820-11200136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 83, 220 | 
| Conread position: | 5-336 | 
| Cow position: | chr3:18426544-18426875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 86, 202 | 
| Conread position: | 5-337 | 
| Cow position: | chr3:35153762-35153446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 5-340 | 
| Cow position: | chr3:69144852-69144526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 201 | 
| Conread position: | 5-349 | 
| Cow position: | chr3:19199143-19198800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 74, 22 | 
| Conread position: | 5-349 | 
| Cow position: | chr3:44837210-44837567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 75, 279 | 
| Conread position: | 5-352 | 
| Cow position: | chr3:41129870-41129532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 81, 216 | 
| Conread position: | 5-356 | 
| Cow position: | chr3:67698435-67698085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 179 | 
| Conread position: | 5-380 | 
| Cow position: | chr3:2199020-2198661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 274, 47 | 
| Conread position: | 5-386 | 
| Cow position: | chr3:32310257-32310666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 82, 372 | 
| Conread position: | 5-445 | 
| Cow position: | chr3:54049873-54050305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 172 | 
| Conread position: | 5-449 | 
| Cow position: | chr3:39969707-39970162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 225 | 
| Conread position: | 5-499 | 
| Cow position: | chr3:61857665-61857156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 135 | 
| Conread position: | 5-516 | 
| Cow position: | chr3:53270989-53270463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 210 | 
| Conread position: | 5-597 | 
| Cow position: | chr3:74088021-74088599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 136 | 
| Conread position: | 5-600 | 
| Cow position: | chr3:55116821-55117409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 609 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 172 | 
| Conread position: | 5-614 | 
| Cow position: | chr3:7678821-7678207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 88 | 
| Conread position: | 5-614 | 
| Cow position: | chr3:20130093-20129493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 215 | 
| Conread position: | 5-614 | 
| Cow position: | chr3:79902653-79902048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 116 | 
| Conread position: | 6-181 | 
| Cow position: | chr3:6724357-6724177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 6-195 | 
| Cow position: | chr3:44207722-44207920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 79, 122 | 
| Conread position: | 6-210 | 
| Cow position: | chr3:38248811-38248600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 74, 146 | 
| Conread position: | 6-213 | 
| Cow position: | chr3:62864233-62864014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 64, 105 | 
| Conread position: | 6-271 | 
| Cow position: | chr3:44234862-44234610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 53, 78 | 
| Conread position: | 6-306 | 
| Cow position: | chr3:35055821-35056125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 74 | 
| Conread position: | 6-337 | 
| Cow position: | chr3:55819904-55819572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 46 | 
| Conread position: | 6-339 | 
| Cow position: | chr3:59035198-59034859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 227 | 
| Conread position: | 6-365 | 
| Cow position: | chr3:83846050-83845701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 206, 57 | 
| Conread position: | 6-399 | 
| Cow position: | chr3:39661299-39661690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 150 | 
| Conread position: | 6-417 | 
| Cow position: | chr3:30008751-30009168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 38 | 
| Conread position: | 6-445 | 
| Cow position: | chr3:17957616-17957181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 70 | 
| Conread position: | 6-500 | 
| Cow position: | chr3:48851812-48852302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 205 | 
| Conread position: | 6-610 | 
| Cow position: | chr3:34271054-34270484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 609 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 6-614 | 
| Cow position: | chr3:3954659-3954040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 118 | 
| Conread position: | 6-614 | 
| Cow position: | chr3:8591213-8591795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 617 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 194 | 
| Conread position: | 6-614 | 
| Cow position: | chr3:15388374-15387750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 470 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 9 | 
| Conread position: | 7-180 | 
| Cow position: | chr3:77171472-77171294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 7-347 | 
| Cow position: | chr3:46005861-46006212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 53, 126 | 
| Conread position: | 7-418 | 
| Cow position: | chr3:52608335-52607924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 209 | 
| Conread position: | 7-614 | 
| Cow position: | chr3:59649412-59648809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 69 | 
| Conread position: | 9-177 | 
| Cow position: | chr3:31168698-31168531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 9-193 | 
| Cow position: | chr3:5551657-5551847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 9-197 | 
| Cow position: | chr3:6288387-6288579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 73, 177 | 
| Conread position: | 9-214 | 
| Cow position: | chr3:81480809-81480601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 76, 124 | 
| Conread position: | 9-220 | 
| Cow position: | chr3:52643780-52643996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 31, 102 | 
| Conread position: | 9-298 | 
| Cow position: | chr3:30026522-30026239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 76, 211 | 
| Conread position: | 9-348 | 
| Cow position: | chr3:8564707-8565059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 11, 61 | 
| Conread position: | 9-355 | 
| Cow position: | chr3:83727097-83727440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 77, 188 | 
| Conread position: | 9-364 | 
| Cow position: | chr3:1788091-1787745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 76, 214 | 
| Conread position: | 9-407 | 
| Cow position: | chr3:55947751-55947327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 212 | 
| Conread position: | 9-431 | 
| Cow position: | chr3:45279621-45279185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 258 | 
| Conread position: | 9-476 | 
| Cow position: | chr3:24548682-24549149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 281 | 
| Conread position: | 9-541 | 
| Cow position: | chr3:53592534-53593081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 197 | 
| Conread position: | 9-614 | 
| Cow position: | chr3:18185229-18184619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 217 | 
| Conread position: | 10-165 | 
| Cow position: | chr3:73305265-73305105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 10-233 | 
| Cow position: | chr3:76931965-76932177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 10-355 | 
| Cow position: | chr3:13890631-13890274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 220 | 
| Conread position: | 11-351 | 
| Cow position: | chr3:62434993-62435358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 11-369 | 
| Cow position: | chr3:25945245-25944870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 27 | 
| Conread position: | 11-471 | 
| Cow position: | chr3:46160709-46161157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 116 | 
| Conread position: | 11-612 | 
| Cow position: | chr3:65413124-65413744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 205 | 
| Conread position: | 12-441 | 
| Cow position: | chr3:14801896-14801469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 197 | 
| Conread position: | 13-440 | 
| Cow position: | chr3:77365139-77365575 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 330 | 
| Conread position: | 13-614 | 
| Cow position: | chr3:55010023-55010620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 275, 57 | 
| Conread position: | 14-181 | 
| Cow position: | chr3:19788684-19788852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 78, 46 | 
| Conread position: | 14-331 | 
| Cow position: | chr3:54551563-54551899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 120 | 
| Conread position: | 14-438 | 
| Cow position: | chr3:44102114-44101702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 52 | 
| Conread position: | 17-258 | 
| Cow position: | chr3:59829469-59829231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 43, 90 | 
| Conread position: | 17-306 | 
| Cow position: | chr3:34784369-34784062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 62, 243 | 
| Conread position: | 17-314 | 
| Cow position: | chr3:29946533-29946242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 68, 203 | 
| Conread position: | 17-380 | 
| Cow position: | chr3:22734114-22734496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 62, 217 | 
| Conread position: | 17-610 | 
| Cow position: | chr3:74234329-74233760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 177 | 
| Conread position: | 17-614 | 
| Cow position: | chr3:37041565-37040985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 58 | 
| Conread position: | 18-177 | 
| Cow position: | chr3:36411940-36412106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 18-503 | 
| Cow position: | chr3:59451746-59451251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 15 | 
| Conread position: | 20-155 | 
| Cow position: | chr3:17039758-17039616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 20-175 | 
| Cow position: | chr3:20911266-20911426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 20-210 | 
| Cow position: | chr3:5305949-5305747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 20-213 | 
| Cow position: | chr3:46266344-46266147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 58, 174 | 
| Conread position: | 20-308 | 
| Cow position: | chr3:1093331-1093026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 126, 11 | 
| Conread position: | 20-335 | 
| Cow position: | chr3:24615699-24616010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 50, 134 | 
| Conread position: | 20-343 | 
| Cow position: | chr3:81039605-81039927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 67, 27 | 
| Conread position: | 20-606 | 
| Cow position: | chr3:75050480-75051076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 47 | 
| Conread position: | 20-614 | 
| Cow position: | chr3:72391229-72390628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 202 | 
| Conread position: | 21-172 | 
| Cow position: | chr3:58010688-58010841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 69, 114 | 
| Conread position: | 21-259 | 
| Cow position: | chr3:79899499-79899250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 21-299 | 
| Cow position: | chr3:64526989-64526710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 71, 14 | 
| Conread position: | 21-337 | 
| Cow position: | chr3:18143973-18144292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 45, 280 | 
| Conread position: | 21-380 | 
| Cow position: | chr3:74134847-74134484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 21 | 
| Conread position: | 21-417 | 
| Cow position: | chr3:30055309-30055704 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 64, 204 | 
| Conread position: | 21-450 | 
| Cow position: | chr3:18498158-18497734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 207 | 
| Conread position: | 21-513 | 
| Cow position: | chr3:53572609-53573104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 209 | 
| Conread position: | 22-214 | 
| Cow position: | chr3:33048253-33048450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 22-348 | 
| Cow position: | chr3:1452984-1453308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 128 | 
| Conread position: | 23-176 | 
| Cow position: | chr3:25037856-25038009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 62, 46 | 
| Conread position: | 23-180 | 
| Cow position: | chr3:38283424-38283585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 23-211 | 
| Cow position: | chr3:15237552-15237743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 45, 102 | 
| Conread position: | 23-337 | 
| Cow position: | chr3:27108740-27109077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 45, 241 | 
| Conread position: | 23-342 | 
| Cow position: | chr3:15751576-15751902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 28 | 
| Conread position: | 23-345 | 
| Cow position: | chr3:26982196-26981881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 174 | 
| Conread position: | 23-348 | 
| Cow position: | chr3:14599067-14598764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 60 | 
| Conread position: | 23-443 | 
| Cow position: | chr3:4032105-4031684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 117 | 
| Conread position: | 23-450 | 
| Cow position: | chr3:14601565-14602004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 47 | 
| Conread position: | 23-482 | 
| Cow position: | chr3:61323472-61323031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 172 | 
| Conread position: | 23-614 | 
| Cow position: | chr3:54960304-54959744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 280, 29 | 
| Conread position: | 23-614 | 
| Cow position: | chr3:77271140-77271732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 609 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 47 | 
| Conread position: | 24-181 | 
| Cow position: | chr3:7045447-7045286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 24-218 | 
| Cow position: | chr3:21642133-21641927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 45, 140 | 
| Conread position: | 25-213 | 
| Cow position: | chr3:69650753-69650943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 65, 31 | 
| Conread position: | 25-535 | 
| Cow position: | chr3:31207015-31206497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 219 | 
| Conread position: | 26-614 | 
| Cow position: | chr3:70565599-70566193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 197 | 
| Conread position: | 27-612 | 
| Cow position: | chr3:73709181-73708601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 32 | 
| Conread position: | 28-614 | 
| Cow position: | chr3:61539937-61539342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 115 | 
| Conread position: | 31-612 | 
| Cow position: | chr3:80565094-80564501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 603 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 60 | 
| Conread position: | 33-600 | 
| Cow position: | chr3:79220989-79220409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 586 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 202 | 
| Conread position: | 34-337 | 
| Cow position: | chr3:79270837-79271134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 97, 27 | 
| Conread position: | 34-470 | 
| Cow position: | chr3:53739067-53739500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 245, 49 | 
| Conread position: | 34-484 | 
| Cow position: | chr3:28898092-28898553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 187 | 
| Conread position: | 35-176 | 
| Cow position: | chr3:3163979-3164127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 35-242 | 
| Cow position: | chr3:36160066-36160276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 55, 32 | 
| Conread position: | 35-253 | 
| Cow position: | chr3:3947158-3946939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 180, 26 | 
| Conread position: | 36-356 | 
| Cow position: | chr3:20677724-20678028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 244, 44 | 
| Conread position: | 36-433 | 
| Cow position: | chr3:75045745-75046144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 119 | 
| Conread position: | 38-312 | 
| Cow position: | chr3:79645304-79645594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 179 | 
| Conread position: | 39-612 | 
| Cow position: | chr3:82461298-82460713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 240, 51 | 
| Conread position: | 42-278 | 
| Cow position: | chr3:63177601-63177362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 43-610 | 
| Cow position: | chr3:59630393-59630957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 9 | 
| Conread position: | 44-614 | 
| Cow position: | chr3:80581775-80581224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 106 | 
| Conread position: | 47-250 | 
| Cow position: | chr3:74900522-74900727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 19, 174 | 
| Conread position: | 48-308 | 
| Cow position: | chr3:84243654-84243915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 44, 78 | 
| Conread position: | 48-310 | 
| Cow position: | chr3:5366884-5366622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 102 | 
| Conread position: | 48-614 | 
| Cow position: | chr3:59588629-59588064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 115 | 
| Conread position: | 49-322 | 
| Cow position: | chr3:58973411-58973143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 16, 195 | 
| Conread position: | 49-356 | 
| Cow position: | chr3:49790695-49791007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 156 | 
| Conread position: | 49-479 | 
| Cow position: | chr3:67704655-67704216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 170, 41 | 
| Conread position: | 52-211 | 
| Cow position: | chr3:64373044-64373209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 52-217 | 
| Cow position: | chr3:28258199-28258037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 52-233 | 
| Cow position: | chr3:61467081-61467264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 52-262 | 
| Cow position: | chr3:26230221-26229996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 40, 176 | 
| Conread position: | 52-270 | 
| Cow position: | chr3:55984210-55983986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 38, 85 | 
| Conread position: | 52-279 | 
| Cow position: | chr3:10104150-10103930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 38, 19 | 
| Conread position: | 52-293 | 
| Cow position: | chr3:22510135-22509894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 65 | 
| Conread position: | 52-294 | 
| Cow position: | chr3:84175712-84175959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 29 | 
| Conread position: | 52-369 | 
| Cow position: | chr3:59621536-59621845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 163 | 
| Conread position: | 52-409 | 
| Cow position: | chr3:15752524-15752878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 104 | 
| Conread position: | 52-431 | 
| Cow position: | chr3:70900002-70899628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 53 | 
| Conread position: | 52-445 | 
| Cow position: | chr3:52863071-52863469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 158 | 
| Conread position: | 52-485 | 
| Cow position: | chr3:17934825-17935253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 179 | 
| Conread position: | 52-501 | 
| Cow position: | chr3:80072235-80071775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 228, 38 | 
| Conread position: | 52-537 | 
| Cow position: | chr3:49231111-49230637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 29 | 
| Conread position: | 52-553 | 
| Cow position: | chr3:49383062-49382558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 31 | 
| Conread position: | 52-611 | 
| Cow position: | chr3:46901304-46900744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 17 | 
| Conread position: | 52-614 | 
| Cow position: | chr3:35299777-35299220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 16 | 
| Conread position: | 53-285 | 
| Cow position: | chr3:35621411-35621178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 32, 17 | 
| Conread position: | 53-291 | 
| Cow position: | chr3:83822478-83822713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 39, 15 | 
| Conread position: | 53-303 | 
| Cow position: | chr3:71238577-71238331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 21, 95 | 
| Conread position: | 53-405 | 
| Cow position: | chr3:55835709-55836075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 31, 253 | 
| Conread position: | 53-408 | 
| Cow position: | chr3:74878483-74878838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 226, 162 | 
| Conread position: | 53-415 | 
| Cow position: | chr3:2680622-2680255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 16 | 
| Conread position: | 53-614 | 
| Cow position: | chr3:14263503-14262940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 573 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 136 | 
| Conread position: | 53-614 | 
| Cow position: | chr3:48296807-48296250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 17 | 
| Conread position: | 54-573 | 
| Cow position: | chr3:12711805-12712339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 521 | 
| Conread position: | 55-272 | 
| Cow position: | chr3:27727721-27727940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 19, 112 | 
| Conread position: | 55-366 | 
| Cow position: | chr3:57760607-57760294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 159 | 
| Conread position: | 55-386 | 
| Cow position: | chr3:15506558-15506220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 20, 92 | 
| Conread position: | 55-601 | 
| Cow position: | chr3:79292928-79292388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 223, 16 | 
| Conread position: | 55-613 | 
| Cow position: | chr3:31421838-31422400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 206 | 
| Conread position: | 56-307 | 
| Cow position: | chr3:43727179-43726931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 57-498 | 
| Cow position: | chr3:81470989-81471436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 166 | 
| Conread position: | 58-212 | 
| Cow position: | chr3:21997682-21997841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 58-279 | 
| Cow position: | chr3:72503790-72504016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 58-450 | 
| Cow position: | chr3:8394050-8393648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 160 | 
| Conread position: | 59-396 | 
| Cow position: | chr3:27940038-27940365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 33, 96 | 
| Conread position: | 60-612 | 
| Cow position: | chr3:80053440-80053992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 22 | 
| Conread position: | 61-612 | 
| Cow position: | chr3:4050296-4049749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 429 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 124 | 
| Conread position: | 65-247 | 
| Cow position: | chr3:23667719-23667537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 26, 153 | 
| Conread position: | 68-385 | 
| Cow position: | chr3:26960492-26960821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 166 | 
| Conread position: | 68-614 | 
| Cow position: | chr3:52017867-52017305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 377 | 
| Conread position: | 70-216 | 
| Cow position: | chr3:67959828-67959975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 20, 78 | 
| Conread position: | 70-612 | 
| Cow position: | chr3:55271951-55272485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 147 | 
| Conread position: | 71-210 | 
| Cow position: | chr3:20515725-20515869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 71-210 | 
| Cow position: | chr3:53904546-53904406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 19, 62 | 
| Conread position: | 71-330 | 
| Cow position: | chr3:24935457-24935203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 14, 145 | 
| Conread position: | 71-438 | 
| Cow position: | chr3:57624557-57624184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 149 | 
| Conread position: | 71-444 | 
| Cow position: | chr3:49139961-49140332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 207, 97 | 
| Conread position: | 71-453 | 
| Cow position: | chr3:38691314-38691696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 10 | 
| Conread position: | 71-464 | 
| Cow position: | chr3:70401989-70401598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 82 | 
| Conread position: | 71-614 | 
| Cow position: | chr3:26218960-26219515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 562 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 153 | 
| Conread position: | 71-614 | 
| Cow position: | chr3:26553631-26554177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 561 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 8 | 
| Conread position: | 71-614 | 
| Cow position: | chr3:58767356-58766841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 188 | 
| Conread position: | 72-375 | 
| Cow position: | chr3:63269314-63269013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 147 | 
| Conread position: | 72-596 | 
| Cow position: | chr3:31046865-31047377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 74 | 
| Conread position: | 72-613 | 
| Cow position: | chr3:62826527-62827066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 560 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 67 | 
| Conread position: | 73-213 | 
| Cow position: | chr3:22871759-22871897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 73-292 | 
| Cow position: | chr3:73237281-73237063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 207, 13 | 
| Conread position: | 76-268 | 
| Cow position: | chr3:45897687-45897499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 76-268 | 
| Cow position: | chr3:45972369-45972557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 83-356 | 
| Cow position: | chr3:3638254-3637992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 198, 60 | 
| Conread position: | 83-449 | 
| Cow position: | chr3:54771083-54770714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 66 | 
| Conread position: | 83-469 | 
| Cow position: | chr3:27545743-27546144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 112 | 
| Conread position: | 84-211 | 
| Cow position: | chr3:5249307-5249429 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 84-223 | 
| Cow position: | chr3:11292173-11292312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 84-247 | 
| Cow position: | chr3:81277393-81277556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 84-258 | 
| Cow position: | chr3:74088626-74088796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 84-324 | 
| Cow position: | chr3:59883994-59884235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 197, 0 | 
| Conread position: | 84-347 | 
| Cow position: | chr3:74502250-74502507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 41 | 
| Conread position: | 84-356 | 
| Cow position: | chr3:66883869-66884135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 197, 66 | 
| Conread position: | 84-369 | 
| Cow position: | chr3:15903886-15904178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 80, 137 | 
| Conread position: | 84-437 | 
| Cow position: | chr3:42367439-42367767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 47, 31 | 
| Conread position: | 84-443 | 
| Cow position: | chr3:68582925-68583286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 19 | 
| Conread position: | 84-476 | 
| Cow position: | chr3:53113250-53112851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 141 | 
| Conread position: | 84-601 | 
| Cow position: | chr3:37599353-37599858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 284, 131 | 
| Conread position: | 84-612 | 
| Cow position: | chr3:49650463-49649928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 144 | 
| Conread position: | 84-612 | 
| Cow position: | chr3:59799324-59798800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 142 | 
| Conread position: | 84-613 | 
| Cow position: | chr3:55085094-55085643 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 470 | 
| Conread position: | 84-614 | 
| Cow position: | chr3:14626075-14626611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 544 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 139 | 
| Conread position: | 85-582 | 
| Cow position: | chr3:27290014-27289514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 145 | 
| Conread position: | 88-442 | 
| Cow position: | chr3:39171414-39171767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 79 | 
| Conread position: | 88-526 | 
| Cow position: | chr3:58285837-58286264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 32 | 
| Conread position: | 88-614 | 
| Cow position: | chr3:34556169-34556676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 57 | 
| Conread position: | 89-356 | 
| Cow position: | chr3:27696909-27697173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 22 | 
| Conread position: | 89-445 | 
| Cow position: | chr3:54862348-54862710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 195, 29 | 
| Conread position: | 89-450 | 
| Cow position: | chr3:71430134-71430498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 346 | 
| Conread position: | 89-454 | 
| Cow position: | chr3:66597682-66598049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 227, 133 | 
| Conread position: | 89-512 | 
| Cow position: | chr3:5456160-5456598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 105, 380 | 
| Conread position: | 89-526 | 
| Cow position: | chr3:36671925-36672371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 45 | 
| Conread position: | 89-590 | 
| Cow position: | chr3:52147581-52148106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 364 | 
| Conread position: | 89-614 | 
| Cow position: | chr3:42178221-42177702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 22 | 
| Conread position: | 89-614 | 
| Cow position: | chr3:51012483-51012993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 72 | 
| Conread position: | 90-220 | 
| Cow position: | chr3:11606389-11606252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 90-302 | 
| Cow position: | chr3:20993882-20993670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 130, 100 | 
| Conread position: | 90-329 | 
| Cow position: | chr3:30222260-30222018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 90-352 | 
| Cow position: | chr3:34669664-34669918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 88 | 
| Conread position: | 90-367 | 
| Cow position: | chr3:7940488-7940761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 123, 53 | 
| Conread position: | 90-385 | 
| Cow position: | chr3:53240325-53240047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 15, 42 | 
| Conread position: | 90-405 | 
| Cow position: | chr3:23444819-23445136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 167 | 
| Conread position: | 90-424 | 
| Cow position: | chr3:8733290-8733599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 277, 56 | 
| Conread position: | 90-443 | 
| Cow position: | chr3:44861244-44861592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 139, 6 | 
| Conread position: | 90-445 | 
| Cow position: | chr3:56308-56655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 60 | 
| Conread position: | 90-447 | 
| Cow position: | chr3:17895917-17895566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 21 | 
| Conread position: | 90-459 | 
| Cow position: | chr3:45648199-45647835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 55 | 
| Conread position: | 90-465 | 
| Cow position: | chr3:12287291-12286930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 243, 34 | 
| Conread position: | 90-524 | 
| Cow position: | chr3:5100703-5101125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 123 | 
| Conread position: | 90-582 | 
| Cow position: | chr3:72676160-72675665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 120 | 
| Conread position: | 90-601 | 
| Cow position: | chr3:61840344-61839849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 60 | 
| Conread position: | 90-601 | 
| Cow position: | chr3:80468609-80469093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 31 | 
| Conread position: | 90-608 | 
| Cow position: | chr3:53588316-53588848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 6 | 
| Conread position: | 90-613 | 
| Cow position: | chr3:37485728-37486244 (view UCSC Genome Browser custom track) | 
| Alignm length: | 541 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 56 | 
| Conread position: | 90-614 | 
| Cow position: | chr3:26920979-26920438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 92 | 
| Conread position: | 90-614 | 
| Cow position: | chr3:35852402-35852931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 162 | 
| Conread position: | 90-614 | 
| Cow position: | chr3:38347259-38346744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 55 | 
| Conread position: | 90-614 | 
| Cow position: | chr3:81371718-81371201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 192 | 
| Conread position: | 91-388 | 
| Cow position: | chr3:76015360-76015070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 188, 145 | 
| Conread position: | 91-519 | 
| Cow position: | chr3:20437588-20438021 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 120 | 
| Conread position: | 92-356 | 
| Cow position: | chr3:56150988-56150722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 181, 125 | 
| Conread position: | 92-369 | 
| Cow position: | chr3:78896714-78896444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 118 | 
| Conread position: | 92-445 | 
| Cow position: | chr3:5097274-5096917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 124 | 
| Conread position: | 92-497 | 
| Cow position: | chr3:57479259-57479667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 189, 80 | 
| Conread position: | 92-508 | 
| Cow position: | chr3:83815721-83816150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 188, 32 | 
| Conread position: | 92-534 | 
| Cow position: | chr3:56698013-56697564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 119 | 
| Conread position: | 92-537 | 
| Cow position: | chr3:20136783-20137231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 50 | 
| Conread position: | 92-564 | 
| Cow position: | chr3:13517090-13517561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 126 | 
| Conread position: | 92-613 | 
| Cow position: | chr3:6863558-6864081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 84 | 
| Conread position: | 92-613 | 
| Cow position: | chr3:33124021-33124544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 123, 80 | 
| Conread position: | 92-613 | 
| Cow position: | chr3:47271636-47272165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 538 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 25 | 
| Conread position: | 92-613 | 
| Cow position: | chr3:66828697-66829236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 541 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 74 | 
| Conread position: | 92-613 | 
| Cow position: | chr3:78111181-78110659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 79 | 
| Conread position: | 92-614 | 
| Cow position: | chr3:6443305-6442780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 124 | 
| Conread position: | 92-614 | 
| Cow position: | chr3:20746493-20747035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 545 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 288 | 
| Conread position: | 92-614 | 
| Cow position: | chr3:54809227-54808704 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 188, 116 | 
| Conread position: | 93-417 | 
| Cow position: | chr3:23448071-23448389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 133 | 
| Conread position: | 93-455 | 
| Cow position: | chr3:27532589-27532959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 25 | 
| Conread position: | 93-561 | 
| Cow position: | chr3:31771747-31771293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 11 | 
| Conread position: | 95-303 | 
| Cow position: | chr3:34675786-34675581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 95-407 | 
| Cow position: | chr3:55991804-55992120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 191, 60 | 
| Conread position: | 95-451 | 
| Cow position: | chr3:48629525-48629878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 51, 24 | 
| Conread position: | 95-501 | 
| Cow position: | chr3:66708003-66708414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 24 | 
| Conread position: | 95-544 | 
| Cow position: | chr3:50462400-50461956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 24 | 
| Conread position: | 95-563 | 
| Cow position: | chr3:54340358-54340815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 23 | 
| Conread position: | 95-601 | 
| Cow position: | chr3:31907080-31907607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 21 | 
| Conread position: | 95-613 | 
| Cow position: | chr3:23477054-23476548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 25, 61 | 
| Conread position: | 95-614 | 
| Cow position: | chr3:15684858-15685361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 24 | 
| Conread position: | 96-341 | 
| Cow position: | chr3:81359042-81359292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 15, 123 | 
| Conread position: | 96-440 | 
| Cow position: | chr3:26493168-26493505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 105, 23 | 
| Conread position: | 96-450 | 
| Cow position: | chr3:73759454-73759810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 50 | 
| Conread position: | 96-465 | 
| Cow position: | chr3:66292113-66292480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 130 | 
| Conread position: | 96-479 | 
| Cow position: | chr3:78530605-78530222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 20, 16 | 
| Conread position: | 99-365 | 
| Cow position: | chr3:55778096-55777834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 106, 20 | 
| Conread position: | 100-240 | 
| Cow position: | chr3:45222092-45222234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 100-613 | 
| Cow position: | chr3:59604028-59603512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 72 | 
| Conread position: | 101-246 | 
| Cow position: | chr3:31505038-31505183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 96, 120 | 
| Conread position: | 101-582 | 
| Cow position: | chr3:75727524-75728012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 23 | 
| Conread position: | 101-614 | 
| Cow position: | chr3:79591833-79592343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 103 | 
| Conread position: | 102-340 | 
| Cow position: | chr3:79092335-79092573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 73, 125 | 
| Conread position: | 102-614 | 
| Cow position: | chr3:66609787-66610294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 61 | 
| Conread position: | 103-608 | 
| Cow position: | chr3:46350727-46350193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 538 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 25 | 
| Conread position: | 106-532 | 
| Cow position: | chr3:10347404-10346974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 39 | 
| Conread position: | 109-279 | 
| Cow position: | chr3:6403469-6403304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 92, 0 | 
| Conread position: | 109-468 | 
| Cow position: | chr3:65800635-65800286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 33 | 
| Conread position: | 109-614 | 
| Cow position: | chr3:4457021-4457529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 120 | 
| Conread position: | 110-428 | 
| Cow position: | chr3:14632934-14633255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 187 | 
| Conread position: | 110-519 | 
| Cow position: | chr3:72019165-72018763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 35 | 
| Conread position: | 110-614 | 
| Cow position: | chr3:32325717-32326236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 108 | 
| Conread position: | 110-614 | 
| Cow position: | chr3:65325321-65325836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 109 | 
| Conread position: | 111-397 | 
| Cow position: | chr3:34937892-34937602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 106, 44 | 
| Conread position: | 111-425 | 
| Cow position: | chr3:35915754-35915438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 60, 106 | 
| Conread position: | 116-613 | 
| Cow position: | chr3:21101016-21100517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 60 | 
| Conread position: | 116-613 | 
| Cow position: | chr3:24441892-24442392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 56 | 
| Conread position: | 116-613 | 
| Cow position: | chr3:73212034-73211543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 105 | 
| Conread position: | 117-416 | 
| Cow position: | chr3:22820613-22820312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 23 | 
| Conread position: | 117-485 | 
| Cow position: | chr3:83921226-83920875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 28 | 
| Conread position: | 119-445 | 
| Cow position: | chr3:23091935-23092274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 180, 0 | 
| Conread position: | 119-556 | 
| Cow position: | chr3:19708068-19708494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 31 | 
| Conread position: | 120-518 | 
| Cow position: | chr3:67022604-67022203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 224, 96 | 
| Conread position: | 121-559 | 
| Cow position: | chr3:64717069-64716623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 13 | 
| Conread position: | 124-356 | 
| Cow position: | chr3:36446683-36446911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 87, 106 | 
| Conread position: | 124-407 | 
| Cow position: | chr3:63332853-63332562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 39, 91 | 
| Conread position: | 126-303 | 
| Cow position: | chr3:80953680-80953504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 154, 8 | 
| Conread position: | 126-610 | 
| Cow position: | chr3:61171475-61171938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 88 | 
| Conread position: | 126-614 | 
| Cow position: | chr3:43528199-43528692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 161 | 
| Conread position: | 127-613 | 
| Cow position: | chr3:23203470-23203958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 45 | 
| Conread position: | 128-613 | 
| Cow position: | chr3:24433579-24433091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 44 | 
| Conread position: | 130-324 | 
| Cow position: | chr3:15992747-15992552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 89, 170 | 
| Conread position: | 130-373 | 
| Cow position: | chr3:70632050-70631809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 39, 121 | 
| Conread position: | 130-439 | 
| Cow position: | chr3:75057105-75057394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 85, 20 | 
| Conread position: | 130-612 | 
| Cow position: | chr3:29807492-29807011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 32 | 
| Conread position: | 131-348 | 
| Cow position: | chr3:35005804-35005595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 148, 79 | 
| Conread position: | 132-548 | 
| Cow position: | chr3:69849484-69849891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 17 | 
| Conread position: | 133-380 | 
| Cow position: | chr3:22907702-22907938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 198, 92 | 
| Conread position: | 133-392 | 
| Cow position: | chr3:55106413-55106676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 147, 81 | 
| Conread position: | 133-567 | 
| Cow position: | chr3:39328426-39328004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 195 | 
| Conread position: | 134-296 | 
| Cow position: | chr3:34117182-34117020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 134-455 | 
| Cow position: | chr3:81277673-81278001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 82 | 
| Conread position: | 135-399 | 
| Cow position: | chr3:83201500-83201768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 12, 82 | 
| Conread position: | 139-385 | 
| Cow position: | chr3:66866381-66866626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 140, 39 | 
| Conread position: | 139-613 | 
| Cow position: | chr3:6078310-6078789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 29 | 
| Conread position: | 140-614 | 
| Cow position: | chr3:68342229-68342715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 168 | 
| Conread position: | 143-612 | 
| Cow position: | chr3:48530649-48530185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 18 | 
| Conread position: | 144-380 | 
| Cow position: | chr3:72290375-72290138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 19, 71 | 
| Conread position: | 145-614 | 
| Cow position: | chr3:28634711-28635182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 136, 27 | 
| Conread position: | 146-455 | 
| Cow position: | chr3:5416207-5416528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 96 | 
| Conread position: | 147-412 | 
| Cow position: | chr3:41328453-41328202 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 132, 24 | 
| Conread position: | 147-614 | 
| Cow position: | chr3:49218302-49218763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 69 | 
| Conread position: | 148-330 | 
| Cow position: | chr3:23037609-23037798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 148-598 | 
| Cow position: | chr3:59515115-59514684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 61 | 
| Conread position: | 149-507 | 
| Cow position: | chr3:19824246-19824608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 132, 67 | 
| Conread position: | 149-586 | 
| Cow position: | chr3:8147657-8148090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 67 | 
| Conread position: | 150-294 | 
| Cow position: | chr3:54551873-54552014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 129, 13 | 
| Conread position: | 150-411 | 
| Cow position: | chr3:25755033-25754784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 130, 64 | 
| Conread position: | 150-614 | 
| Cow position: | chr3:27544326-27544794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 20 | 
| Conread position: | 150-614 | 
| Cow position: | chr3:80081804-80082272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 156 | 
| Conread position: | 151-273 | 
| Cow position: | chr3:15683175-15683298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 8, 69 | 
| Conread position: | 151-409 | 
| Cow position: | chr3:62789996-62790257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 19, 99 | 
| Conread position: | 151-437 | 
| Cow position: | chr3:56703841-56704132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 10, 134 | 
| Conread position: | 151-589 | 
| Cow position: | chr3:49793404-49792983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 308, 95 | 
| Conread position: | 154-614 | 
| Cow position: | chr3:9843592-9843119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 55 | 
| Conread position: | 155-427 | 
| Cow position: | chr3:52650524-52650797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 64, 51 | 
| Conread position: | 155-428 | 
| Cow position: | chr3:17450935-17451203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 189, 96 | 
| Conread position: | 155-430 | 
| Cow position: | chr3:84000617-84000341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 61 | 
| Conread position: | 155-440 | 
| Cow position: | chr3:22171195-22170908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 65, 142 | 
| Conread position: | 155-570 | 
| Cow position: | chr3:36174061-36174487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 142 | 
| Conread position: | 155-572 | 
| Cow position: | chr3:51146662-51147075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 25 | 
| Conread position: | 155-614 | 
| Cow position: | chr3:48269869-48269405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 111 | 
| Conread position: | 156-418 | 
| Cow position: | chr3:16362732-16362998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 122, 61 | 
| Conread position: | 156-464 | 
| Cow position: | chr3:18763893-18763589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 33 | 
| Conread position: | 158-371 | 
| Cow position: | chr3:15859665-15859875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 205, 121 | 
| Conread position: | 160-435 | 
| Cow position: | chr3:48923522-48923789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 183, 54 | 
| Conread position: | 161-386 | 
| Cow position: | chr3:22899998-22900220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 119, 9 | 
| Conread position: | 161-438 | 
| Cow position: | chr3:42483906-42483621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 161-511 | 
| Cow position: | chr3:12324068-12323716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 59 | 
| Conread position: | 162-612 | 
| Cow position: | chr3:28675983-28675536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 8 | 
| Conread position: | 163-330 | 
| Cow position: | chr3:53192430-53192590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 117, 52 | 
| Conread position: | 163-335 | 
| Cow position: | chr3:15232027-15231857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 22, 54 | 
| Conread position: | 163-421 | 
| Cow position: | chr3:28692433-28692691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 79 | 
| Conread position: | 163-502 | 
| Cow position: | chr3:22953860-22954192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 30, 15 | 
| Conread position: | 163-593 | 
| Cow position: | chr3:57553852-57554277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 133 | 
| Conread position: | 163-614 | 
| Cow position: | chr3:44622890-44623366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 45 | 
| Conread position: | 164-314 | 
| Cow position: | chr3:18056434-18056291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 115, 33 | 
| Conread position: | 164-445 | 
| Cow position: | chr3:78894330-78894600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 52 | 
| Conread position: | 164-464 | 
| Cow position: | chr3:83934503-83934209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 117, 53 | 
| Conread position: | 164-551 | 
| Cow position: | chr3:31501343-31500963 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 52 | 
| Conread position: | 164-614 | 
| Cow position: | chr3:79207991-79208443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 110 | 
| Conread position: | 165-478 | 
| Cow position: | chr3:78201261-78200948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 5 | 
| Conread position: | 165-612 | 
| Cow position: | chr3:61678699-61678236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 180 | 
| Conread position: | 166-348 | 
| Cow position: | chr3:25060073-25059891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 115, 51 | 
| Conread position: | 167-366 | 
| Cow position: | chr3:59885385-59885180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 168-461 | 
| Cow position: | chr3:49787405-49787108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 111, 47 | 
| Conread position: | 169-303 | 
| Cow position: | chr3:76169294-76169427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 110, 47 | 
| Conread position: | 169-611 | 
| Cow position: | chr3:30358643-30359084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 46 | 
| Conread position: | 170-307 | 
| Cow position: | chr3:1534627-1534766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 170-312 | 
| Cow position: | chr3:30907356-30907498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 49, 12 | 
| Conread position: | 170-324 | 
| Cow position: | chr3:27247200-27247351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 115, 51 | 
| Conread position: | 170-353 | 
| Cow position: | chr3:83707984-83708159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 111, 44 | 
| Conread position: | 170-356 | 
| Cow position: | chr3:61024312-61024498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 109, 39 | 
| Conread position: | 170-380 | 
| Cow position: | chr3:80908294-80908074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 95, 46 | 
| Conread position: | 170-423 | 
| Cow position: | chr3:73590005-73590262 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 49, 130 | 
| Conread position: | 170-439 | 
| Cow position: | chr3:63860900-63861181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 81 | 
| Conread position: | 170-459 | 
| Cow position: | chr3:24304926-24305205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 40 | 
| Conread position: | 170-488 | 
| Cow position: | chr3:59271532-59271230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 127 | 
| Conread position: | 170-612 | 
| Cow position: | chr3:6265506-6265053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 71 | 
| Conread position: | 170-612 | 
| Cow position: | chr3:77227314-77226863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 129 | 
| Conread position: | 170-614 | 
| Cow position: | chr3:3164506-3164947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 49 | 
| Conread position: | 170-614 | 
| Cow position: | chr3:41366991-41367437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 128 | 
| Conread position: | 170-614 | 
| Cow position: | chr3:44534770-44535215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 45 | 
| Conread position: | 171-438 | 
| Cow position: | chr3:49731651-49731916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 46 | 
| Conread position: | 171-611 | 
| Cow position: | chr3:30701298-30700867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 129 | 
| Conread position: | 171-614 | 
| Cow position: | chr3:14717781-14717353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 5 | 
| Conread position: | 172-612 | 
| Cow position: | chr3:2903306-2903750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 111 | 
| Conread position: | 172-614 | 
| Cow position: | chr3:47284823-47284381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 43 | 
| Conread position: | 173-514 | 
| Cow position: | chr3:17952644-17952301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 44 | 
| Conread position: | 174-334 | 
| Cow position: | chr3:54557613-54557446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 174-361 | 
| Cow position: | chr3:3062553-3062363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 40, 134 | 
| Conread position: | 174-599 | 
| Cow position: | chr3:27286216-27285789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 45 | 
| Conread position: | 175-369 | 
| Cow position: | chr3:55062887-55063075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 176-348 | 
| Cow position: | chr3:27212347-27212176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 103, 123 | 
| Conread position: | 176-594 | 
| Cow position: | chr3:67161927-67161495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 42 | 
| Conread position: | 177-417 | 
| Cow position: | chr3:4087177-4087424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 170 | 
| Conread position: | 178-445 | 
| Cow position: | chr3:23945083-23944811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 44, 85 | 
| Conread position: | 178-567 | 
| Cow position: | chr3:16004005-16004392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 128 | 
| Conread position: | 180-361 | 
| Cow position: | chr3:65381129-65380955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 105, 35 | 
| Conread position: | 180-514 | 
| Cow position: | chr3:13118321-13117992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 42 | 
| Conread position: | 180-599 | 
| Cow position: | chr3:43657726-43658159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 146, 124 | 
| Conread position: | 182-320 | 
| Cow position: | chr3:59317493-59317626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 28, 8 | 
| Conread position: | 183-613 | 
| Cow position: | chr3:49455214-49454778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 33 | 
| Conread position: | 184-417 | 
| Cow position: | chr3:8604043-8604272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 95, 31 | 
| Conread position: | 184-418 | 
| Cow position: | chr3:45307911-45307675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 166, 94 | 
| Conread position: | 186-342 | 
| Cow position: | chr3:16891285-16891118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 186-553 | 
| Cow position: | chr3:15661728-15662092 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 30 | 
| Conread position: | 186-614 | 
| Cow position: | chr3:7858344-7857898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 356 | 
| Conread position: | 188-342 | 
| Cow position: | chr3:20779778-20779924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 143, 21 | 
| Conread position: | 188-462 | 
| Cow position: | chr3:19198650-19198378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 26, 47 | 
| Conread position: | 190-438 | 
| Cow position: | chr3:42588329-42588070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 148 | 
| Conread position: | 190-540 | 
| Cow position: | chr3:35283120-35283466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 39 | 
| Conread position: | 192-338 | 
| Cow position: | chr3:11043691-11043544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 192-455 | 
| Cow position: | chr3:25691718-25691452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 14 | 
| Conread position: | 193-359 | 
| Cow position: | chr3:78739824-78739664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 88, 97 | 
| Conread position: | 194-614 | 
| Cow position: | chr3:82360008-82359567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 23 | 
| Conread position: | 196-608 | 
| Cow position: | chr3:522667-522272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 9 | 
| Conread position: | 205-534 | 
| Cow position: | chr3:22021018-22021346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 70 | 
| Conread position: | 205-614 | 
| Cow position: | chr3:76188640-76188236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 12 | 
| Conread position: | 206-445 | 
| Cow position: | chr3:11949398-11949639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 23, 76 | 
| Conread position: | 206-511 | 
| Cow position: | chr3:61361359-61361065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 75, 13 | 
| Conread position: | 207-507 | 
| Cow position: | chr3:31903160-31903456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 10 | 
| Conread position: | 210-526 | 
| Cow position: | chr3:48211441-48211142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 19, 32 | 
| Conread position: | 217-441 | 
| Cow position: | chr3:66116166-66116394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 66, 79 | 
| Conread position: | 218-396 | 
| Cow position: | chr3:29334569-29334751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 62, 13 | 
| Conread position: | 219-397 | 
| Cow position: | chr3:4861626-4861451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 62, 26 | 
| Conread position: | 219-614 | 
| Cow position: | chr3:2483389-2483003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 113 | 
| Conread position: | 220-613 | 
| Cow position: | chr3:22872105-22872504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 338 | 
| Conread position: | 226-369 | 
| Cow position: | chr3:23265358-23265502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 228-485 | 
| Cow position: | chr3:73777218-73776947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 56, 173 | 
| Conread position: | 228-526 | 
| Cow position: | chr3:33632958-33633253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 42 | 
| Conread position: | 229-403 | 
| Cow position: | chr3:35074614-35074437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 52, 10 | 
| Conread position: | 229-415 | 
| Cow position: | chr3:23270031-23269846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 52, 128 | 
| Conread position: | 229-449 | 
| Cow position: | chr3:56704611-56704827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 69 | 
| Conread position: | 229-452 | 
| Cow position: | chr3:16809852-16810084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 230-607 | 
| Cow position: | chr3:23277611-23277991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 24 | 
| Conread position: | 234-424 | 
| Cow position: | chr3:55971154-55970960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 45, 65 | 
| Conread position: | 234-450 | 
| Cow position: | chr3:18855023-18854802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 129 | 
| Conread position: | 234-482 | 
| Cow position: | chr3:34571330-34571075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 54, 231 | 
| Conread position: | 234-549 | 
| Cow position: | chr3:63945047-63945365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 47, 78 | 
| Conread position: | 239-614 | 
| Cow position: | chr3:52691053-52690669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 45, 59 | 
| Conread position: | 239-614 | 
| Cow position: | chr3:53904102-53903728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 39 | 
| Conread position: | 253-442 | 
| Cow position: | chr3:66964391-66964576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 122, 23 | 
| Conread position: | 253-570 | 
| Cow position: | chr3:48371044-48370720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 52 | 
| Conread position: | 253-614 | 
| Cow position: | chr3:36656860-36657228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 256-614 | 
| Cow position: | chr3:53222733-53223103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 265-517 | 
| Cow position: | chr3:65020233-65019974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 234 | 
| Conread position: | 265-612 | 
| Cow position: | chr3:61262699-61262368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 39 | 
| Conread position: | 268-582 | 
| Cow position: | chr3:9116795-9116487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 13 | 
| Conread position: | 272-450 | 
| Cow position: | chr3:49388729-49388551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 54, 62 | 
| Conread position: | 272-519 | 
| Cow position: | chr3:4040525-4040275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 53, 46 | 
| Conread position: | 278-503 | 
| Cow position: | chr3:29310964-29311193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 278-614 | 
| Cow position: | chr3:3289672-3289336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 18 | 
| Conread position: | 278-614 | 
| Cow position: | chr3:18245536-18245870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 150 | 
| Conread position: | 279-607 | 
| Cow position: | chr3:12670814-12671143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 15 | 
| Conread position: | 280-612 | 
| Cow position: | chr3:8901300-8900959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 24 | 
| Conread position: | 284-600 | 
| Cow position: | chr3:6403176-6402856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 62 | 
| Conread position: | 286-614 | 
| Cow position: | chr3:41947242-41947565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 149 | 
| Conread position: | 288-536 | 
| Cow position: | chr3:39554447-39554690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 75, 125 | 
| Conread position: | 290-496 | 
| Cow position: | chr3:48900630-48900839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 97 | 
| Conread position: | 296-534 | 
| Cow position: | chr3:79691113-79690879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 75, 96 | 
| Conread position: | 298-536 | 
| Cow position: | chr3:38252856-38252619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 73, 116 | 
| Conread position: | 298-553 | 
| Cow position: | chr3:34953522-34953260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 46, 201 | 
| Conread position: | 298-614 | 
| Cow position: | chr3:5536042-5536363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 50, 168 | 
| Conread position: | 298-614 | 
| Cow position: | chr3:19109600-19109278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 104 | 
| Conread position: | 299-574 | 
| Cow position: | chr3:40100808-40101086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 33, 132 | 
| Conread position: | 304-613 | 
| Cow position: | chr3:83437248-83437556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 27 | 
| Conread position: | 305-440 | 
| Cow position: | chr3:30907778-30907916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 61, 86 | 
Show alignments to all cow chromosomes.
