Non-Coding RNA Search

Cow genome map


           Conread name:
           rpliv0134_k7.y1
        

               Conread position:
               11-265
               

               Cow position:
               chr11:3283289-3283034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               61, 18
               

               Conread position:
               17-269
               

               Cow position:
               chr11:58111707-58111949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               25-153
               

               Cow position:
               chr11:28078717-28078592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               93, 20
               

               Conread position:
               32-149
               

               Cow position:
               chr11:17369750-17369633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               32-152
               

               Cow position:
               chr11:17859924-17860049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               32-154
               

               Cow position:
               chr11:37459281-37459158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               86, 23
               

               Conread position:
               32-175
               

               Cow position:
               chr11:70837615-70837761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               19, 28
               

               Conread position:
               39-155
               

               Cow position:
               chr11:55830011-55830126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               80, 17
               

               Conread position:
               41-268
               

               Cow position:
               chr11:32782659-32782878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               78, 31
               

               Conread position:
               41-268
               

               Cow position:
               chr11:56895744-56895969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               77, 67
               

               Conread position:
               42-263
               

               Cow position:
               chr11:31326235-31326018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               47-154
               

               Cow position:
               chr11:68909325-68909432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               70, 38
               

               Conread position:
               50-154
               

               Cow position:
               chr11:24551599-24551493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               90
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               50-265
               

               Cow position:
               chr11:47110460-47110258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               69, 8
               

               Conread position:
               50-268
               

               Cow position:
               chr11:36250977-36251203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               69, 27
               

               Conread position:
               53-188
               

               Cow position:
               chr11:34623420-34623281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               54-275
               

               Cow position:
               chr11:53778822-53778616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               65, 24
               

               Conread position:
               55-188
               

               Cow position:
               chr11:6245523-6245388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               55-275
               

               Cow position:
               chr11:74379095-74378874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               56-236
               

               Cow position:
               chr11:17563433-17563257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               24, 51
               

               Conread position:
               56-261
               

               Cow position:
               chr11:62226211-62226000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               24, 10
               

               Conread position:
               56-272
               

               Cow position:
               chr11:67312989-67312783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               24, 53
               

               Conread position:
               57-152
               

               Cow position:
               chr11:65431719-65431621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               84
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               57-181
               

               Cow position:
               chr11:22720195-22720070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 15
               

               Conread position:
               57-182
               

               Cow position:
               chr11:3896500-3896621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               62, 20
               

               Conread position:
               57-269
               

               Cow position:
               chr11:51627203-51627002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 50
               

               Conread position:
               57-275
               

               Cow position:
               chr11:4436964-4436747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               15, 85
               

               Conread position:
               58-230
               

               Cow position:
               chr11:70710010-70709832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               58-245
               

               Cow position:
               chr11:42183236-42183061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               61, 19
               

               Conread position:
               58-256
               

               Cow position:
               chr11:73977081-73977282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               71, 49
               

               Conread position:
               58-259
               

               Cow position:
               chr11:13843671-13843463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               61, 20
               

               Conread position:
               58-261
               

               Cow position:
               chr11:33340920-33341131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               94, 62
               

               Conread position:
               58-268
               

               Cow position:
               chr11:37982348-37982572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               58-275
               

               Cow position:
               chr11:53717592-53717807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               59, 50
               

               Conread position:
               59-153
               

               Cow position:
               chr11:50197314-50197409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               96
               

               Alignm identity:
               83
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               59-154
               

               Cow position:
               chr11:16315072-16314976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               82
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               59-154
               

               Cow position:
               chr11:25968655-25968751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               81
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               59-181
               

               Cow position:
               chr11:23063841-23063962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               59, 81
               

               Conread position:
               59-226
               

               Cow position:
               chr11:59702716-59702539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               59-238
               

               Cow position:
               chr11:17465881-17466053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               60, 99
               

               Conread position:
               59-240
               

               Cow position:
               chr11:10078854-10078668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               59-240
               

               Cow position:
               chr11:43430238-43430422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               34, 23
               

               Conread position:
               59-256
               

               Cow position:
               chr11:25614608-25614796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               60, 10
               

               Conread position:
               59-256
               

               Cow position:
               chr11:49210619-49210803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               60, 85
               

               Conread position:
               59-257
               

               Cow position:
               chr11:47883021-47882821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               58, 26
               

               Conread position:
               59-269
               

               Cow position:
               chr11:18777391-18777592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               8, 90
               

               Conread position:
               59-272
               

               Cow position:
               chr11:6267408-6267198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               60, 11
               

               Conread position:
               59-272
               

               Cow position:
               chr11:62778672-62778443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               17, 203
               

               Conread position:
               59-272
               

               Cow position:
               chr11:64351564-64351788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               59-275
               

               Cow position:
               chr11:66099659-66099863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               59, 86
               

               Conread position:
               59-275
               

               Cow position:
               chr11:77745050-77745250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 104
               

               Conread position:
               59-275
               

               Cow position:
               chr11:81763069-81762861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               8, 49
               

               Conread position:
               59-275
               

               Cow position:
               chr11:84775287-84775074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               60, 12
               

               Conread position:
               59-276
               

               Cow position:
               chr11:58938518-58938746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               60-175
               

               Cow position:
               chr11:3234336-3234220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               57, 12
               

               Conread position:
               60-272
               

               Cow position:
               chr11:48233035-48232830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               60-272
               

               Cow position:
               chr11:61178586-61178360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               58, 12
               

               Conread position:
               60-275
               

               Cow position:
               chr11:36917566-36917777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               15, 107
               

               Conread position:
               60-275
               

               Cow position:
               chr11:59916367-59916145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               60-284
               

               Cow position:
               chr11:52415646-52415422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               59, 78
               

               Conread position:
               61-154
               

               Cow position:
               chr11:62742450-62742546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               84
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               61-240
               

               Cow position:
               chr11:11483517-11483346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 93
               

               Conread position:
               61-256
               

               Cow position:
               chr11:75246566-75246367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               58, 74
               

               Conread position:
               61-261
               

               Cow position:
               chr11:17638322-17638521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               101, 56
               

               Conread position:
               61-269
               

               Cow position:
               chr11:47784976-47784780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               58, 102
               

               Conread position:
               61-272
               

               Cow position:
               chr11:16934443-16934648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               56, 17
               

               Conread position:
               62-151
               

               Cow position:
               chr11:47904430-47904341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               91
               

               Alignm identity:
               79
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               56, 10
               

               Conread position:
               62-239
               

               Cow position:
               chr11:17195621-17195795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               62-240
               

               Cow position:
               chr11:63640663-63640838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               62-264
               

               Cow position:
               chr11:42786487-42786677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               62-268
               

               Cow position:
               chr11:47314230-47314426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               57, 19
               

               Conread position:
               63-275
               

               Cow position:
               chr11:6202650-6202442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               56, 104
               

               Conread position:
               63-290
               

               Cow position:
               chr11:49486983-49486764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               56, 78
               

               Conread position:
               64-254
               

               Cow position:
               chr11:21893955-21894140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               8, 80
               

               Conread position:
               64-272
               

               Cow position:
               chr11:58173829-58173628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               5, 60
               

               Conread position:
               65-240
               

               Cow position:
               chr11:14466264-14466452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               65-240
               

               Cow position:
               chr11:29699495-29699665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               54, 92
               

               Conread position:
               65-240
               

               Cow position:
               chr11:30597227-30597062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               53, 43
               

               Conread position:
               65-261
               

               Cow position:
               chr11:40792503-40792691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               37, 12
               

               Conread position:
               65-262
               

               Cow position:
               chr11:82730792-82730985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               54, 93
               

               Conread position:
               65-270
               

               Cow position:
               chr11:71111088-71110897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               54, 7
               

               Conread position:
               65-272
               

               Cow position:
               chr11:17321861-17321650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               7, 74
               

               Conread position:
               65-275
               

               Cow position:
               chr11:60296930-60296730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               53, 76
               

               Conread position:
               66-153
               

               Cow position:
               chr11:51683407-51683319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               89
               

               Alignm identity:
               78
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               66-175
               

               Cow position:
               chr11:36849148-36849038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               89
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               66-181
               

               Cow position:
               chr11:30111803-30111685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               66-238
               

               Cow position:
               chr11:7928868-7928710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               66-261
               

               Cow position:
               chr11:41293613-41293804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               53, 73
               

               Conread position:
               66-261
               

               Cow position:
               chr11:69076124-69075924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               66-272
               

               Cow position:
               chr11:37778626-37778823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               52, 79
               

               Conread position:
               66-272
               

               Cow position:
               chr11:69119511-69119296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               66-277
               

               Cow position:
               chr11:71456021-71455818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               53, 80
               

               Conread position:
               66-284
               

               Cow position:
               chr11:74152557-74152763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               13, 75
               

               Conread position:
               67-202
               

               Cow position:
               chr11:76896548-76896685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               52, 20
               

               Conread position:
               67-213
               

               Cow position:
               chr11:76995104-76995257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               67-225
               

               Cow position:
               chr11:19788344-19788189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               52, 41
               

               Conread position:
               67-268
               

               Cow position:
               chr11:61454312-61454510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               19, 61
               

               Conread position:
               67-275
               

               Cow position:
               chr11:7013538-7013745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               52, 109
               

               Conread position:
               68-275
               

               Cow position:
               chr11:48650175-48649972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               50, 88
               

               Conread position:
               70-192
               

               Cow position:
               chr11:48932402-48932525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               70-238
               

               Cow position:
               chr11:81748127-81747958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               49, 123
               

               Conread position:
               70-240
               

               Cow position:
               chr11:27932489-27932316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               70-240
               

               Cow position:
               chr11:80596542-80596372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               49, 116
               

               Conread position:
               70-272
               

               Cow position:
               chr11:3740151-3739956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               49, 75
               

               Conread position:
               70-272
               

               Cow position:
               chr11:71345128-71345321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 50
               

               Conread position:
               70-275
               

               Cow position:
               chr11:6594042-6594240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               49, 76
               

               Conread position:
               70-276
               

               Cow position:
               chr11:25376699-25376499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               49, 94
               

               Conread position:
               70-284
               

               Cow position:
               chr11:22747120-22747339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               10, 177
               

               Conread position:
               70-292
               

               Cow position:
               chr11:35073381-35073609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               47, 170
               

               Conread position:
               71-159
               

               Cow position:
               chr11:58186058-58185969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               90
               

               Alignm identity:
               78
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               71-194
               

               Cow position:
               chr11:8419744-8419868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               72-184
               

               Cow position:
               chr11:37546016-37546131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               72-238
               

               Cow position:
               chr11:20762037-20761879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               47, 67
               

               Conread position:
               72-255
               

               Cow position:
               chr11:69421520-69421693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               47, 85
               

               Conread position:
               72-268
               

               Cow position:
               chr11:17831021-17831216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               8, 102
               

               Conread position:
               72-268
               

               Cow position:
               chr11:23137841-23138049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               49, 33
               

               Conread position:
               72-268
               

               Cow position:
               chr11:79869529-79869331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               47, 72
               

               Conread position:
               72-268
               

               Cow position:
               chr11:81606063-81605864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               72-275
               

               Cow position:
               chr11:34693062-34692853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               72-275
               

               Cow position:
               chr11:36286889-36286695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               47, 13
               

               Conread position:
               72-278
               

               Cow position:
               chr11:79466407-79466208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               47, 85
               

               Conread position:
               73-160
               

               Cow position:
               chr11:67600962-67600874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               89
               

               Alignm identity:
               78
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               73-269
               

               Cow position:
               chr11:4652763-4652967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               46, 121
               

               Conread position:
               73-272
               

               Cow position:
               chr11:16906847-16907048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               73-275
               

               Cow position:
               chr11:73983806-73984004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               73-282
               

               Cow position:
               chr11:42335981-42335776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               45, 98
               

               Conread position:
               73-284
               

               Cow position:
               chr11:434676-434883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               74-240
               

               Cow position:
               chr11:15382312-15382468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               46, 69
               

               Conread position:
               74-261
               

               Cow position:
               chr11:26845386-26845580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               74-261
               

               Cow position:
               chr11:71443039-71443226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               45, 66
               

               Conread position:
               74-261
               

               Cow position:
               chr11:77208270-77208088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               43, 72
               

               Conread position:
               74-268
               

               Cow position:
               chr11:2639461-2639651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               43, 85
               

               Conread position:
               74-275
               

               Cow position:
               chr11:69307713-69307513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               45, 29
               

               Conread position:
               74-284
               

               Cow position:
               chr11:35351850-35352050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               75-260
               

               Cow position:
               chr11:44234557-44234370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               44, 113
               

               Conread position:
               75-262
               

               Cow position:
               chr11:952468-952282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               104, 91
               

               Conread position:
               75-275
               

               Cow position:
               chr11:36065818-36066009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               121, 10
               

               Conread position:
               76-267
               

               Cow position:
               chr11:29786312-29786492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               42, 81
               

               Conread position:
               76-275
               

               Cow position:
               chr11:70517397-70517594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               43, 30
               

               Conread position:
               78-223
               

               Cow position:
               chr11:58990690-58990544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               40, 104
               

               Conread position:
               78-261
               

               Cow position:
               chr11:377441-377628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               78-268
               

               Cow position:
               chr11:47904312-47904126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               41, 19
               

               Conread position:
               78-275
               

               Cow position:
               chr11:72375487-72375683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               40, 78
               

               Conread position:
               79-229
               

               Cow position:
               chr11:62487355-62487203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               40, 104
               

               Conread position:
               79-273
               

               Cow position:
               chr11:62754120-62754316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               40, 68
               

               Conread position:
               80-251
               

               Cow position:
               chr11:82999548-82999714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               162, 32
               

               Conread position:
               80-268
               

               Cow position:
               chr11:50073132-50072943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               39, 99
               

               Conread position:
               82-181
               

               Cow position:
               chr11:77468242-77468340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               101
               

               Alignm identity:
               85
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 62
               

               Conread position:
               82-240
               

               Cow position:
               chr11:2864198-2864038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               37, 109
               

               Conread position:
               84-275
               

               Cow position:
               chr11:48474882-48474703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               33, 45
               

               Conread position:
               87-240
               

               Cow position:
               chr11:43008136-43008285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 72
               

               Conread position:
               87-261
               

               Cow position:
               chr11:19606764-19606591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               32, 90
               

               Conread position:
               87-284
               

               Cow position:
               chr11:6092571-6092373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               94, 143
               

               Conread position:
               88-232
               

               Cow position:
               chr11:6024393-6024542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               88-238
               

               Cow position:
               chr11:46113083-46113230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 47
               

               Conread position:
               88-240
               

               Cow position:
               chr11:34144750-34144890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 51
               

               Conread position:
               88-261
               

               Cow position:
               chr11:70741325-70741156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               20, 79
               

               Conread position:
               88-272
               

               Cow position:
               chr11:5249347-5249526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               33, 70
               

               Conread position:
               88-272
               

               Cow position:
               chr11:44017153-44016977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 51
               

               Conread position:
               88-275
               

               Cow position:
               chr11:6633895-6633710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               31, 84
               

               Conread position:
               88-275
               

               Cow position:
               chr11:35363666-35363481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               28, 85
               

               Conread position:
               92-254
               

               Cow position:
               chr11:65803681-65803850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               96-272
               

               Cow position:
               chr11:82289749-82289581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               25, 61
               

               Conread position:
               100-284
               

               Cow position:
               chr11:42067228-42067043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               18, 88
               

               Conread position:
               103-272
               

               Cow position:
               chr11:63909502-63909665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               16, 8
               

               Conread position:
               111-270
               

               Cow position:
               chr11:41983012-41983161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               8, 29
               

               Conread position:
               111-275
               

               Cow position:
               chr11:63917315-63917477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               8, 46
               

               Conread position:
               130-272
               

               Cow position:
               chr11:35669810-35669949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               23, 33
               

               Conread position:
               132-261
               

               Cow position:
               chr11:28644229-28644101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               98
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               132-266
               

               Cow position:
               chr11:34623312-34623179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               132-272
               

               Cow position:
               chr11:56290653-56290514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               111, 53
               

               Conread position:
               132-275
               

               Cow position:
               chr11:79018917-79019059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               135-273
               

               Cow position:
               chr11:29946772-29946912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               139-268
               

               Cow position:
               chr11:70826083-70825954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               124, 46
               

               Conread position:
               140-268
               

               Cow position:
               chr11:77128794-77128666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               123, 37
               

               Conread position:
               142-272
               

               Cow position:
               chr11:35860715-35860585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               10, 106
               
Show alignments to all cow chromosomes.
Conread position:	11-265
Cow position:	chr11:3283289-3283034 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	188
Alignm E-value:	6e-38
Alignm gaps (pig, cow):	61, 18
Conread position:	17-269
Cow position:	chr11:58111707-58111949 (view UCSC Genome Browser custom track)
Alignm length:	255
Alignm identity:	175
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	8, 39
Conread position:	25-153
Cow position:	chr11:28078717-28078592 (view UCSC Genome Browser custom track)
Alignm length:	130
Alignm identity:	104
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	93, 20
Conread position:	32-149
Cow position:	chr11:17369750-17369633 (view UCSC Genome Browser custom track)
Alignm length:	120
Alignm identity:	97
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	34, 46
Conread position:	32-152
Cow position:	chr11:17859924-17860049 (view UCSC Genome Browser custom track)
Alignm length:	126
Alignm identity:	101
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	39, 0
Conread position:	32-154
Cow position:	chr11:37459281-37459158 (view UCSC Genome Browser custom track)
Alignm length:	126
Alignm identity:	99
Alignm E-value:	9e-21
Alignm gaps (pig, cow):	86, 23
Conread position:	32-175
Cow position:	chr11:70837615-70837761 (view UCSC Genome Browser custom track)
Alignm length:	148
Alignm identity:	114
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	19, 28
Conread position:	39-155
Cow position:	chr11:55830011-55830126 (view UCSC Genome Browser custom track)
Alignm length:	118
Alignm identity:	94
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	80, 17
Conread position:	41-268
Cow position:	chr11:32782659-32782878 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	161
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	78, 31
Conread position:	42-263
Cow position:	chr11:31326235-31326018 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	164
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	43, 16
Conread position:	47-154
Cow position:	chr11:68909325-68909432 (view UCSC Genome Browser custom track)
Alignm length:	109
Alignm identity:	91
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	70, 38
Conread position:	50-154
Cow position:	chr11:24551599-24551493 (view UCSC Genome Browser custom track)
Alignm length:	107
Alignm identity:	90
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	25, 0
Conread position:	50-265
Cow position:	chr11:47110460-47110258 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	169
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	69, 8
Conread position:	50-268
Cow position:	chr11:36250977-36251203 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	145
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	69, 27
Conread position:	53-188
Cow position:	chr11:34623420-34623281 (view UCSC Genome Browser custom track)
Alignm length:	140
Alignm identity:	110
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	6, 0
Conread position:	54-275
Cow position:	chr11:53778822-53778616 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	164
Alignm E-value:	8e-30
Alignm gaps (pig, cow):	65, 24
Conread position:	55-188
Cow position:	chr11:6245523-6245388 (view UCSC Genome Browser custom track)
Alignm length:	136
Alignm identity:	102
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	64, 0
Conread position:	55-275
Cow position:	chr11:74379095-74378874 (view UCSC Genome Browser custom track)
Alignm length:	224
Alignm identity:	159
Alignm E-value:	9e-31
Alignm gaps (pig, cow):	64, 97
Conread position:	56-236
Cow position:	chr11:17563433-17563257 (view UCSC Genome Browser custom track)
Alignm length:	184
Alignm identity:	144
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	24, 51
Conread position:	56-261
Cow position:	chr11:62226211-62226000 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	159
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	24, 10