Cow genome map

Conread name: rpliv0134_k7.y1

Conread position: 19-154
Cow position: chr12:22048143-22048004 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 24-240
Cow position: chr12:403645-403875 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 25-234
Cow position: chr12:1106034-1106248 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 26-174
Cow position: chr12:7515086-7514935 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 27-154
Cow position: chr12:37718556-37718688 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 28-154
Cow position: chr12:1005639-1005770 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 27

Conread position: 28-262
Cow position: chr12:19869689-19869455 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 64

Conread position: 29-240
Cow position: chr12:39382823-39382609 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 16, 29

Conread position: 35-280
Cow position: chr12:32392127-32391892 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 82, 23

Conread position: 41-272
Cow position: chr12:27430715-27430488 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 34, 99

Conread position: 45-268
Cow position: chr12:15163345-15163124 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 76, 36

Conread position: 46-245
Cow position: chr12:11090632-11090425 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 73, 20

Conread position: 47-271
Cow position: chr12:28598457-28598246 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 50-154
Cow position: chr12:17775034-17774927 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 52-272
Cow position: chr12:22882266-22882038 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 56-241
Cow position: chr12:42163232-42163053 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 47

Conread position: 56-256
Cow position: chr12:18523763-18523567 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 51

Conread position: 57-174
Cow position: chr12:8472516-8472634 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 62, 12

Conread position: 57-237
Cow position: chr12:34473430-34473608 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 102

Conread position: 57-272
Cow position: chr12:32419166-32419393 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 157

Conread position: 57-275
Cow position: chr12:20355402-20355194 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 99

Conread position: 57-280
Cow position: chr12:12301109-12300891 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 25, 104

Conread position: 58-160
Cow position: chr12:3454874-3454773 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 61, 50

Conread position: 58-238
Cow position: chr12:29770373-29770563 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 18, 0

Conread position: 58-261
Cow position: chr12:17487156-17486958 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 124

Conread position: 58-261
Cow position: chr12:38774044-38774250 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 77, 32

Conread position: 58-272
Cow position: chr12:43860469-43860681 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 81

Conread position: 58-275
Cow position: chr12:31228758-31228551 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 61, 19

Conread position: 59-154
Cow position: chr12:14360819-14360725 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 60, 11

Conread position: 59-209
Cow position: chr12:21723299-21723454 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 59-228
Cow position: chr12:11660105-11659947 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 15, 60

Conread position: 59-238
Cow position: chr12:44622533-44622364 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 13

Conread position: 59-240
Cow position: chr12:23764674-23764498 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 59, 19

Conread position: 59-252
Cow position: chr12:35217856-35218061 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 59-255
Cow position: chr12:29779701-29779915 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 59-261
Cow position: chr12:583326-583517 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 99

Conread position: 59-261
Cow position: chr12:4962831-4962627 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 13, 129

Conread position: 59-261
Cow position: chr12:22323091-22323281 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 60, 85

Conread position: 59-261
Cow position: chr12:31960082-31959872 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 17, 35

Conread position: 59-268
Cow position: chr12:43551040-43551237 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 112

Conread position: 59-269
Cow position: chr12:29018102-29017889 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 144

Conread position: 59-272
Cow position: chr12:34275822-34275600 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 19

Conread position: 59-276
Cow position: chr12:23912805-23913033 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 59, 12

Conread position: 60-239
Cow position: chr12:36012436-36012615 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 20, 86

Conread position: 60-272
Cow position: chr12:25456598-25456390 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 15, 99

Conread position: 61-240
Cow position: chr12:4789874-4790060 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 58, 11

Conread position: 61-260
Cow position: chr12:11583896-11583703 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 57, 44

Conread position: 61-261
Cow position: chr12:19502240-19502435 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 91

Conread position: 61-275
Cow position: chr12:7110383-7110176 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 85

Conread position: 62-181
Cow position: chr12:17969635-17969519 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 18

Conread position: 63-272
Cow position: chr12:3675342-3675545 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 56, 90

Conread position: 64-151
Cow position: chr12:35310511-35310599 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 64-153
Cow position: chr12:41364729-41364819 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 64-247
Cow position: chr12:38002309-38002131 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 93

Conread position: 65-269
Cow position: chr12:3879783-3879995 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 41, 129

Conread position: 65-272
Cow position: chr12:5543598-5543815 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 65-278
Cow position: chr12:15832377-15832169 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 54, 41

Conread position: 66-154
Cow position: chr12:39692644-39692555 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 80
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 66-175
Cow position: chr12:2661198-2661310 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 66-261
Cow position: chr12:32051689-32051503 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 52, 69

Conread position: 66-267
Cow position: chr12:28651293-28651099 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 41

Conread position: 66-268
Cow position: chr12:8943048-8943239 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 13

Conread position: 66-273
Cow position: chr12:6720517-6720308 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 53, 62

Conread position: 66-275
Cow position: chr12:34165764-34165562 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 148, 50

Conread position: 67-163
Cow position: chr12:29131757-29131660 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 67-269
Cow position: chr12:44013421-44013612 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 55

Conread position: 67-272
Cow position: chr12:4596641-4596446 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 52, 76

Conread position: 67-275
Cow position: chr12:29200210-29200417 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 196, 104

Conread position: 67-275
Cow position: chr12:33319469-33319689 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 70-150
Cow position: chr12:4769085-4769003 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 75
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 70-261
Cow position: chr12:25445102-25444907 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 49, 60

Conread position: 71-267
Cow position: chr12:22469686-22469498 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 192, 48

Conread position: 72-271
Cow position: chr12:36993930-36994134 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 72-272
Cow position: chr12:7000420-7000621 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 46, 111

Conread position: 73-235
Cow position: chr12:23621836-23621667 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 73-240
Cow position: chr12:1848310-1848483 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 73-240
Cow position: chr12:2241650-2241817 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 35, 52

Conread position: 73-257
Cow position: chr12:30919596-30919422 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 48, 84

Conread position: 73-261
Cow position: chr12:24186315-24186497 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 33

Conread position: 73-272
Cow position: chr12:22341421-22341228 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 66

Conread position: 73-275
Cow position: chr12:4341573-4341765 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 48, 82

Conread position: 74-260
Cow position: chr12:31883507-31883332 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 45, 83

Conread position: 74-275
Cow position: chr12:45167847-45168040 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 32

Conread position: 75-261
Cow position: chr12:4014262-4014440 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 76

Conread position: 75-261
Cow position: chr12:34148179-34148368 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 98

Conread position: 76-225
Cow position: chr12:3598550-3598702 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 78-261
Cow position: chr12:46120661-46120839 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 41, 7

Conread position: 79-275
Cow position: chr12:18765789-18765994 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 39, 29

Conread position: 80-261
Cow position: chr12:18021033-18020851 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 37, 169

Conread position: 80-272
Cow position: chr12:6225966-6226162 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 8, 100

Conread position: 80-275
Cow position: chr12:37993566-37993753 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 8, 60

Conread position: 82-275
Cow position: chr12:27572056-27572261 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 88-265
Cow position: chr12:45723492-45723301 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 90-226
Cow position: chr12:45028517-45028375 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 98-268
Cow position: chr12:42698096-42698260 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 21, 41

Conread position: 102-254
Cow position: chr12:24604762-24604909 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 68

Conread position: 108-238
Cow position: chr12:34171576-34171440 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 109-275
Cow position: chr12:42143306-42143139 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 10, 79

Conread position: 111-238
Cow position: chr12:14131627-14131754 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 7, 77

Conread position: 129-238
Cow position: chr12:34459785-34459676 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 7, 57

Show alignments to all cow chromosomes.