Cow genome map
| Conread name: | rpliv0134_k7.y1 |
| Conread position: | 25-170 |
| Cow position: | chr14:23695266-23695406 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 40-150 |
| Cow position: | chr14:36443209-36443097 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 41-272 |
| Cow position: | chr14:22941933-22941706 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 41-281 |
| Cow position: | chr14:41486459-41486229 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 43-237 |
| Cow position: | chr14:27312204-27312400 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 43-272 |
| Cow position: | chr14:27364391-27364599 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 52-196 |
| Cow position: | chr14:26258522-26258374 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 56-256 |
| Cow position: | chr14:33827935-33828129 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 63, 10 |
| Conread position: | 56-277 |
| Cow position: | chr14:34586117-34586340 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 57-275 |
| Cow position: | chr14:31138945-31138716 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 166 |
| Conread position: | 57-304 |
| Cow position: | chr14:42546734-42546500 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 58-188 |
| Cow position: | chr14:17238132-17238260 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 58-268 |
| Cow position: | chr14:44153160-44152957 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 59-148 |
| Cow position: | chr14:11470322-11470232 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 59-154 |
| Cow position: | chr14:23100441-23100536 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 59-154 |
| Cow position: | chr14:45955116-45955212 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 59-175 |
| Cow position: | chr14:4044211-4044328 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 59-208 |
| Cow position: | chr14:15258796-15258941 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 59-220 |
| Cow position: | chr14:24757648-24757797 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 59-233 |
| Cow position: | chr14:37109964-37109788 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 59-256 |
| Cow position: | chr14:28987519-28987710 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 59-256 |
| Cow position: | chr14:34096754-34096558 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 59-257 |
| Cow position: | chr14:18301784-18301968 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 149, 48 |
| Conread position: | 59-257 |
| Cow position: | chr14:27274962-27275169 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 201 |
| Conread position: | 59-261 |
| Cow position: | chr14:9029841-9029636 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 59-272 |
| Cow position: | chr14:22997770-22997555 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 8, 130 |
| Conread position: | 59-272 |
| Cow position: | chr14:34331518-34331304 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 58, 122 |
| Conread position: | 59-274 |
| Cow position: | chr14:48899995-48900200 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 59-280 |
| Cow position: | chr14:12033417-12033208 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 59-283 |
| Cow position: | chr14:29631731-29631970 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 59-284 |
| Cow position: | chr14:8027738-8027526 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 59-285 |
| Cow position: | chr14:9770140-9769920 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 61-149 |
| Cow position: | chr14:38411135-38411224 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 79 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-238 |
| Cow position: | chr14:6226810-6226623 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-240 |
| Cow position: | chr14:5639572-5639387 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 61-261 |
| Cow position: | chr14:29238960-29239165 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 61-279 |
| Cow position: | chr14:20362145-20361937 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 63-257 |
| Cow position: | chr14:16340815-16341002 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 63-278 |
| Cow position: | chr14:16749861-16749657 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 64-174 |
| Cow position: | chr14:4209290-4209401 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 66-175 |
| Cow position: | chr14:42435339-42435446 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 66-220 |
| Cow position: | chr14:23038899-23038747 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 66-240 |
| Cow position: | chr14:33758181-33758359 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 66-275 |
| Cow position: | chr14:27044955-27044747 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 66-275 |
| Cow position: | chr14:37436888-37436685 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 66-275 |
| Cow position: | chr14:39423060-39422857 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 88 |
| Conread position: | 66-284 |
| Cow position: | chr14:39041196-39041403 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 67-275 |
| Cow position: | chr14:37884096-37883891 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 70-256 |
| Cow position: | chr14:33326793-33326605 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 70-261 |
| Cow position: | chr14:10078093-10078279 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 70-264 |
| Cow position: | chr14:3878067-3878265 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 70-275 |
| Cow position: | chr14:24712795-24712599 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 71-275 |
| Cow position: | chr14:42330186-42330380 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 72-240 |
| Cow position: | chr14:48762209-48762379 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 72-268 |
| Cow position: | chr14:18763623-18763419 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 162 |
| Conread position: | 72-275 |
| Cow position: | chr14:34983689-34983893 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 114, 60 |
| Conread position: | 72-284 |
| Cow position: | chr14:34200018-34199809 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 73-252 |
| Cow position: | chr14:47200292-47200122 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 74-282 |
| Cow position: | chr14:30260593-30260800 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 75-272 |
| Cow position: | chr14:16457349-16457541 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 76-181 |
| Cow position: | chr14:5034028-5033920 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 76-261 |
| Cow position: | chr14:42440076-42439898 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 76-268 |
| Cow position: | chr14:22582969-22583168 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 77-265 |
| Cow position: | chr14:24981299-24981474 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 78-240 |
| Cow position: | chr14:39926028-39926198 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 78-261 |
| Cow position: | chr14:45577269-45577081 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 113 |
| Conread position: | 78-272 |
| Cow position: | chr14:20482005-20481817 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 78-272 |
| Cow position: | chr14:38286138-38285947 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 78-275 |
| Cow position: | chr14:19359716-19359914 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 78-275 |
| Cow position: | chr14:20070909-20071096 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 78-275 |
| Cow position: | chr14:36708947-36709149 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 80-261 |
| Cow position: | chr14:21963969-21964148 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 87-275 |
| Cow position: | chr14:18351011-18350832 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 88-268 |
| Cow position: | chr14:38674073-38673901 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 90-275 |
| Cow position: | chr14:19129347-19129531 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 105-260 |
| Cow position: | chr14:25778961-25779112 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 108-275 |
| Cow position: | chr14:27076843-27077002 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 152-268 |
| Cow position: | chr14:24785561-24785677 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 111, 33 |
Show alignments to all cow chromosomes.