Cow genome map

Conread name: rpliv0134_k7.y1

Conread position: 4-256
Cow position: chr15:36846367-36846121 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 65

Conread position: 25-153
Cow position: chr15:22531515-22531643 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 93, 34

Conread position: 25-240
Cow position: chr15:23598495-23598280 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 94, 45

Conread position: 30-240
Cow position: chr15:39782788-39782998 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 25, 115

Conread position: 39-275
Cow position: chr15:225949-225732 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 106

Conread position: 40-256
Cow position: chr15:52804817-52804606 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 78, 29

Conread position: 49-280
Cow position: chr15:30471111-30470897 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 23

Conread position: 54-275
Cow position: chr15:12357477-12357689 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 71, 65

Conread position: 55-273
Cow position: chr15:3026932-3026728 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 64, 15

Conread position: 56-261
Cow position: chr15:42789304-42789090 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 56-265
Cow position: chr15:5964241-5964040 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 63, 86

Conread position: 56-275
Cow position: chr15:20487330-20487131 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 23, 54

Conread position: 57-154
Cow position: chr15:42142746-42142844 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 57-196
Cow position: chr15:17866432-17866297 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 22, 100

Conread position: 57-275
Cow position: chr15:8549624-8549411 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 21

Conread position: 58-275
Cow position: chr15:10431661-10431885 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 61, 20

Conread position: 59-154
Cow position: chr15:20566003-20566099 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 59-154
Cow position: chr15:40562808-40562712 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 59-156
Cow position: chr15:11909073-11908974 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 59-189
Cow position: chr15:13250945-13251075 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 118

Conread position: 59-193
Cow position: chr15:17812182-17812321 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 62

Conread position: 59-219
Cow position: chr15:45613990-45613837 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 79

Conread position: 59-240
Cow position: chr15:24305706-24305524 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 58, 20

Conread position: 59-250
Cow position: chr15:12034820-12034639 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 58, 97

Conread position: 59-253
Cow position: chr15:36849039-36849225 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 22, 28

Conread position: 59-256
Cow position: chr15:275518-275709 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 69

Conread position: 59-256
Cow position: chr15:5522822-5523010 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 103

Conread position: 59-268
Cow position: chr15:28788063-28788281 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 59-269
Cow position: chr15:10457155-10456949 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 15, 87

Conread position: 59-272
Cow position: chr15:10737904-10737675 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 13

Conread position: 59-272
Cow position: chr15:19554050-19553855 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 19

Conread position: 59-272
Cow position: chr15:22444112-22443915 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 97

Conread position: 59-275
Cow position: chr15:5535510-5535288 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 60-157
Cow position: chr15:4351109-4351012 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 59, 30

Conread position: 60-239
Cow position: chr15:47058602-47058782 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 57, 12

Conread position: 60-256
Cow position: chr15:22136543-22136743 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 136
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 60-257
Cow position: chr15:18776899-18776697 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 12, 131

Conread position: 60-265
Cow position: chr15:45584595-45584795 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 12, 83

Conread position: 60-272
Cow position: chr15:14281411-14281618 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 60-273
Cow position: chr15:12264733-12264519 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 57, 18

Conread position: 60-275
Cow position: chr15:286348-286550 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 78

Conread position: 61-154
Cow position: chr15:52791817-52791911 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 61-159
Cow position: chr15:15147331-15147232 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 61-240
Cow position: chr15:18647060-18646888 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 58, 17

Conread position: 61-268
Cow position: chr15:29793328-29793127 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 50

Conread position: 62-256
Cow position: chr15:10073832-10074015 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 7, 45

Conread position: 63-261
Cow position: chr15:47042764-47042571 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 70

Conread position: 65-266
Cow position: chr15:38883027-38883212 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 53, 25

Conread position: 65-269
Cow position: chr15:23780188-23780005 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 7, 0

Conread position: 66-153
Cow position: chr15:46563595-46563507 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 66-240
Cow position: chr15:38877648-38877476 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 53, 65

Conread position: 66-240
Cow position: chr15:53116372-53116540 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 78

Conread position: 66-245
Cow position: chr15:52611169-52611345 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 53, 87

Conread position: 66-265
Cow position: chr15:44119586-44119405 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 66-268
Cow position: chr15:2141439-2141237 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 53, 16

Conread position: 66-269
Cow position: chr15:6427765-6427566 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 97

Conread position: 66-272
Cow position: chr15:33976834-33976626 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 37

Conread position: 66-272
Cow position: chr15:35441230-35441009 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 53, 41

Conread position: 66-275
Cow position: chr15:50660484-50660696 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 67-170
Cow position: chr15:16911917-16911813 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 67-261
Cow position: chr15:29604841-29604642 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 13, 96

Conread position: 67-265
Cow position: chr15:17353778-17353584 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 54, 31

Conread position: 68-275
Cow position: chr15:31024869-31025065 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 68-275
Cow position: chr15:35577077-35577275 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 85

Conread position: 70-263
Cow position: chr15:34145390-34145195 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 40, 33

Conread position: 70-268
Cow position: chr15:17162064-17162261 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 40

Conread position: 71-218
Cow position: chr15:43750354-43750504 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 141

Conread position: 72-155
Cow position: chr15:49230425-49230341 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 75
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 72-180
Cow position: chr15:33729773-33729880 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 47, 86

Conread position: 72-261
Cow position: chr15:8624002-8624186 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 21

Conread position: 72-264
Cow position: chr15:31175651-31175854 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 64, 118

Conread position: 72-265
Cow position: chr15:20950139-20950319 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 68

Conread position: 72-269
Cow position: chr15:36714143-36713948 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 128

Conread position: 72-272
Cow position: chr15:21389306-21389094 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 72-275
Cow position: chr15:42190327-42190517 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 73-240
Cow position: chr15:10335622-10335794 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 73-256
Cow position: chr15:12722973-12723142 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 63

Conread position: 73-272
Cow position: chr15:5072209-5072015 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 67

Conread position: 73-272
Cow position: chr15:21520031-21520220 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 46, 80

Conread position: 74-259
Cow position: chr15:27016382-27016191 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 74-261
Cow position: chr15:10442622-10442442 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 66

Conread position: 74-272
Cow position: chr15:51701434-51701235 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 44, 165

Conread position: 74-275
Cow position: chr15:29541755-29541949 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 45, 63

Conread position: 75-260
Cow position: chr15:19758937-19759118 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 82

Conread position: 75-268
Cow position: chr15:41000210-41000005 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 178

Conread position: 75-269
Cow position: chr15:8997181-8997364 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 44, 66

Conread position: 76-217
Cow position: chr15:17859828-17859686 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 65

Conread position: 76-275
Cow position: chr15:5726207-5726397 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 43, 30

Conread position: 78-248
Cow position: chr15:4509924-4509755 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 41, 47

Conread position: 78-266
Cow position: chr15:14868652-14868478 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 40, 28

Conread position: 78-267
Cow position: chr15:23719609-23719418 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 64

Conread position: 78-270
Cow position: chr15:31637189-31637367 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 41, 67

Conread position: 82-256
Cow position: chr15:49924935-49925103 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 37, 74

Conread position: 87-271
Cow position: chr15:5657720-5657903 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 86

Conread position: 87-272
Cow position: chr15:21803762-21803588 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 53

Conread position: 87-272
Cow position: chr15:34207299-34207118 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 21

Conread position: 88-275
Cow position: chr15:21166550-21166353 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 94-261
Cow position: chr15:15232809-15232631 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 108-275
Cow position: chr15:39520081-39520240 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 49

Conread position: 117-275
Cow position: chr15:44280014-44280174 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 23, 73

Conread position: 139-272
Cow position: chr15:14261320-14261188 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 144-275
Cow position: chr15:39316902-39316770 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 145-284
Cow position: chr15:16911719-16911581 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.