Cow genome map

Conread name: rpliv0134_k7.y1

Conread position: 25-261
Cow position: chr17:21718703-21718925 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 142

Conread position: 27-271
Cow position: chr17:31480746-31480976 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 92, 32

Conread position: 29-155
Cow position: chr17:19471488-19471615 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 32-154
Cow position: chr17:1875683-1875809 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 32-275
Cow position: chr17:11985571-11985820 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 77

Conread position: 41-275
Cow position: chr17:26807197-26806955 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 30, 70

Conread position: 43-275
Cow position: chr17:6270036-6269812 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 27

Conread position: 47-228
Cow position: chr17:35140587-35140760 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 48

Conread position: 51-261
Cow position: chr17:18766729-18766922 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 51-269
Cow position: chr17:7137265-7137043 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 13

Conread position: 54-173
Cow position: chr17:6769518-6769401 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 65, 18

Conread position: 54-268
Cow position: chr17:20780786-20780577 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 28, 65

Conread position: 57-154
Cow position: chr17:26225284-26225187 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 61, 15

Conread position: 57-191
Cow position: chr17:10234548-10234685 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 57-268
Cow position: chr17:39715443-39715224 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 62, 51

Conread position: 57-275
Cow position: chr17:7590198-7590405 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 76

Conread position: 58-226
Cow position: chr17:40793520-40793352 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 100

Conread position: 58-240
Cow position: chr17:21325599-21325425 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 61, 20

Conread position: 58-240
Cow position: chr17:42697581-42697387 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 19

Conread position: 58-258
Cow position: chr17:5685843-5686040 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 61, 26

Conread position: 58-261
Cow position: chr17:21466002-21466191 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 88

Conread position: 58-275
Cow position: chr17:25139530-25139321 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 20

Conread position: 59-154
Cow position: chr17:12958157-12958252 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 60, 19

Conread position: 59-175
Cow position: chr17:24766669-24766785 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 19

Conread position: 59-189
Cow position: chr17:41912872-41912740 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 14, 112

Conread position: 59-261
Cow position: chr17:24554276-24554068 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 60, 13

Conread position: 59-261
Cow position: chr17:26231219-26231026 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 59, 19

Conread position: 59-261
Cow position: chr17:32138160-32138352 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 85

Conread position: 59-267
Cow position: chr17:27613492-27613284 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 34

Conread position: 59-269
Cow position: chr17:32027192-32027389 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 59, 97

Conread position: 59-271
Cow position: chr17:11179822-11179613 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 7, 103

Conread position: 59-272
Cow position: chr17:9117936-9117705 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 59-272
Cow position: chr17:9487575-9487354 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 135

Conread position: 59-272
Cow position: chr17:25193243-25193466 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 18

Conread position: 59-275
Cow position: chr17:6787195-6786994 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 97

Conread position: 59-275
Cow position: chr17:10508179-10508376 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 59-275
Cow position: chr17:22056758-22056970 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 7, 40

Conread position: 59-275
Cow position: chr17:28814216-28814435 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 60, 13

Conread position: 59-275
Cow position: chr17:28888306-28888520 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 20, 100

Conread position: 60-256
Cow position: chr17:40332033-40331841 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 97

Conread position: 60-265
Cow position: chr17:11280836-11281032 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 26

Conread position: 60-270
Cow position: chr17:21788390-21788595 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 59, 78

Conread position: 60-272
Cow position: chr17:21738612-21738813 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 62, 12

Conread position: 60-274
Cow position: chr17:21372763-21372550 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 19, 98

Conread position: 60-275
Cow position: chr17:15215806-15216029 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 41

Conread position: 61-154
Cow position: chr17:4271106-4271200 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 83
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 61-176
Cow position: chr17:40243457-40243342 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 106

Conread position: 61-255
Cow position: chr17:3389091-3388901 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 89

Conread position: 61-261
Cow position: chr17:3097389-3097584 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 89, 11

Conread position: 61-272
Cow position: chr17:20856262-20856480 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 62-229
Cow position: chr17:22427607-22427770 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 8, 46

Conread position: 63-272
Cow position: chr17:20306583-20306387 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 9

Conread position: 64-150
Cow position: chr17:25763049-25762961 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 66-240
Cow position: chr17:21292790-21292951 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 52, 40

Conread position: 66-256
Cow position: chr17:9854231-9854053 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 80

Conread position: 66-261
Cow position: chr17:11664328-11664513 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 9, 91

Conread position: 66-267
Cow position: chr17:4286303-4286109 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 66-272
Cow position: chr17:3067588-3067798 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 42

Conread position: 66-280
Cow position: chr17:9713073-9713292 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 53, 116

Conread position: 66-280
Cow position: chr17:21298713-21298498 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 53, 72

Conread position: 67-261
Cow position: chr17:15299603-15299807 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 163

Conread position: 67-275
Cow position: chr17:9077966-9078163 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 52, 88

Conread position: 67-275
Cow position: chr17:20929492-20929299 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 8, 90

Conread position: 68-267
Cow position: chr17:25490795-25490996 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 119

Conread position: 69-239
Cow position: chr17:27639782-27639953 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 88

Conread position: 70-234
Cow position: chr17:1364853-1364697 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 48, 11

Conread position: 70-240
Cow position: chr17:31585683-31585511 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 41

Conread position: 70-261
Cow position: chr17:5250315-5250507 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 131

Conread position: 70-275
Cow position: chr17:9306036-9306246 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 50, 199

Conread position: 71-227
Cow position: chr17:6529797-6529636 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 114

Conread position: 72-175
Cow position: chr17:1409949-1410053 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 72-240
Cow position: chr17:25352448-25352290 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 34

Conread position: 72-261
Cow position: chr17:15702621-15702428 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 8, 180

Conread position: 72-275
Cow position: chr17:7810504-7810697 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 8, 85

Conread position: 72-275
Cow position: chr17:17410542-17410351 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 59

Conread position: 72-275
Cow position: chr17:21681036-21680840 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 47, 67

Conread position: 73-240
Cow position: chr17:21757878-21758048 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 44

Conread position: 74-240
Cow position: chr17:15340485-15340659 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 45, 34

Conread position: 74-275
Cow position: chr17:22074238-22074440 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 45, 53

Conread position: 75-240
Cow position: chr17:6849065-6848887 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 33

Conread position: 76-272
Cow position: chr17:5720136-5719932 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 77-268
Cow position: chr17:32553813-32553989 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 186, 42

Conread position: 78-233
Cow position: chr17:37128786-37128940 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 41, 88

Conread position: 78-264
Cow position: chr17:26802691-26802870 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 68

Conread position: 78-268
Cow position: chr17:4472277-4472470 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 167

Conread position: 78-272
Cow position: chr17:40288739-40288939 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 82-275
Cow position: chr17:35541917-35542110 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 38

Conread position: 87-272
Cow position: chr17:969137-968945 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 163

Conread position: 87-272
Cow position: chr17:11224337-11224161 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 32, 52

Conread position: 89-283
Cow position: chr17:21335326-21335514 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 29, 57

Conread position: 92-275
Cow position: chr17:3291312-3291130 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 27, 71

Conread position: 93-272
Cow position: chr17:8823544-8823373 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 64

Conread position: 94-275
Cow position: chr17:37430261-37430447 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 12

Conread position: 126-272
Cow position: chr17:23702839-23702684 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 130-261
Cow position: chr17:27303767-27303897 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 130-267
Cow position: chr17:35457614-35457750 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 43

Conread position: 132-261
Cow position: chr17:5743091-5743219 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 135-275
Cow position: chr17:20874592-20874454 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 119, 49

Conread position: 140-272
Cow position: chr17:11215039-11215171 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 155-275
Cow position: chr17:12342303-12342423 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 15

Show alignments to all cow chromosomes.