Cow genome map

Conread name: rpliv0134_k7.y1

Conread position: 25-275
Cow position: chr18:52251638-52251873 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 49

Conread position: 26-175
Cow position: chr18:40475966-40476114 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 37

Conread position: 41-255
Cow position: chr18:4534807-4535019 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 131

Conread position: 41-271
Cow position: chr18:18320354-18320572 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 78, 11

Conread position: 43-272
Cow position: chr18:19961936-19962158 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 116

Conread position: 48-270
Cow position: chr18:27388788-27388574 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 57

Conread position: 49-228
Cow position: chr18:41950405-41950233 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 53

Conread position: 49-230
Cow position: chr18:39190278-39190472 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 50-275
Cow position: chr18:1954391-1954605 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 69, 22

Conread position: 51-189
Cow position: chr18:4932443-4932304 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 127

Conread position: 54-151
Cow position: chr18:32960265-32960167 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 54-268
Cow position: chr18:1549354-1549559 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 121

Conread position: 58-202
Cow position: chr18:34093878-34093740 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 61, 12

Conread position: 58-262
Cow position: chr18:12270695-12270499 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 14, 100

Conread position: 59-154
Cow position: chr18:24946261-24946165 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 59-154
Cow position: chr18:39860596-39860693 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 59-174
Cow position: chr18:16997498-16997384 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 80

Conread position: 59-229
Cow position: chr18:17756761-17756915 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 58, 19

Conread position: 59-239
Cow position: chr18:39875067-39875239 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 13

Conread position: 59-256
Cow position: chr18:3044638-3044445 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 86

Conread position: 59-261
Cow position: chr18:39865820-39866013 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 47

Conread position: 59-275
Cow position: chr18:47806089-47806300 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 128, 47

Conread position: 59-282
Cow position: chr18:21878274-21878481 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 59, 79

Conread position: 59-283
Cow position: chr18:41553184-41553393 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 118

Conread position: 60-238
Cow position: chr18:51178532-51178707 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 99

Conread position: 60-272
Cow position: chr18:35077461-35077237 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 43

Conread position: 61-176
Cow position: chr18:23026849-23026962 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 56, 81

Conread position: 61-228
Cow position: chr18:24705630-24705462 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 58, 27

Conread position: 61-259
Cow position: chr18:35950224-35950035 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 95

Conread position: 61-261
Cow position: chr18:16379123-16378921 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 19, 97

Conread position: 61-261
Cow position: chr18:43555337-43555526 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 58, 10

Conread position: 61-272
Cow position: chr18:31724699-31724902 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 57, 24

Conread position: 61-275
Cow position: chr18:24529658-24529885 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 167

Conread position: 61-283
Cow position: chr18:31556980-31557184 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 16

Conread position: 62-240
Cow position: chr18:8390389-8390209 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 144
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 57, 0

Conread position: 62-261
Cow position: chr18:22055684-22055876 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 9

Conread position: 62-275
Cow position: chr18:30295430-30295641 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 7, 73

Conread position: 63-240
Cow position: chr18:51867339-51867528 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 63-256
Cow position: chr18:36230529-36230723 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 55

Conread position: 64-272
Cow position: chr18:5701440-5701234 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 99

Conread position: 65-260
Cow position: chr18:23921519-23921703 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 0

Conread position: 65-267
Cow position: chr18:26647737-26647536 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 99

Conread position: 65-272
Cow position: chr18:50612341-50612544 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 54, 87

Conread position: 66-175
Cow position: chr18:9008631-9008520 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 103

Conread position: 66-175
Cow position: chr18:40356770-40356880 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 66-240
Cow position: chr18:25647044-25647232 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 53, 184

Conread position: 66-240
Cow position: chr18:35454479-35454650 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 10, 43

Conread position: 66-270
Cow position: chr18:46072645-46072453 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 66-272
Cow position: chr18:40759395-40759194 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 55, 98

Conread position: 67-262
Cow position: chr18:37023364-37023553 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 86

Conread position: 67-275
Cow position: chr18:24343036-24342827 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 52, 84

Conread position: 71-240
Cow position: chr18:4555995-4556150 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 47, 63

Conread position: 72-192
Cow position: chr18:45079096-45079218 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 72-226
Cow position: chr18:21608668-21608818 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 86

Conread position: 72-229
Cow position: chr18:51190340-51190504 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 48, 131

Conread position: 72-261
Cow position: chr18:11672222-11672041 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 14, 64

Conread position: 72-261
Cow position: chr18:53039017-53038828 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 47, 108

Conread position: 72-268
Cow position: chr18:4466797-4466996 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 14, 116

Conread position: 72-271
Cow position: chr18:30921400-30921207 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 72-272
Cow position: chr18:35693043-35692843 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 47, 122

Conread position: 73-256
Cow position: chr18:23163061-23162889 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 48, 57

Conread position: 74-218
Cow position: chr18:18699330-18699175 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 74-265
Cow position: chr18:11673023-11672826 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 29, 63

Conread position: 75-235
Cow position: chr18:33008249-33008090 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 75-261
Cow position: chr18:52649174-52649349 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 44, 87

Conread position: 77-261
Cow position: chr18:6399459-6399638 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 39, 50

Conread position: 78-240
Cow position: chr18:3158421-3158576 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 69

Conread position: 78-261
Cow position: chr18:42978470-42978647 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 41, 62

Conread position: 78-265
Cow position: chr18:33607154-33606956 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 119

Conread position: 78-270
Cow position: chr18:10656616-10656428 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 30

Conread position: 78-272
Cow position: chr18:51213016-51212825 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 28

Conread position: 78-273
Cow position: chr18:36459114-36458916 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 21

Conread position: 78-275
Cow position: chr18:14091163-14090965 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 133

Conread position: 78-284
Cow position: chr18:35888926-35889124 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 40, 50

Conread position: 80-240
Cow position: chr18:19881997-19882158 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 59, 43

Conread position: 80-240
Cow position: chr18:49543781-49543609 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 138

Conread position: 80-265
Cow position: chr18:42747759-42747582 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 8, 78

Conread position: 87-282
Cow position: chr18:56157904-56157702 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 31, 178

Conread position: 88-235
Cow position: chr18:35478679-35478531 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 31, 57

Conread position: 88-261
Cow position: chr18:29402355-29402186 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 31, 55

Conread position: 88-261
Cow position: chr18:55736881-55736702 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 88-275
Cow position: chr18:19896272-19896467 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 106

Conread position: 94-284
Cow position: chr18:52245368-52245183 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 27, 79

Conread position: 112-272
Cow position: chr18:51392496-51392656 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 6, 74

Conread position: 132-275
Cow position: chr18:49982856-49982714 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 139-275
Cow position: chr18:22214609-22214472 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 140-275
Cow position: chr18:19883651-19883516 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 102, 45

Conread position: 158-278
Cow position: chr18:46048852-46048733 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 166-275
Cow position: chr18:47410635-47410527 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Show alignments to all cow chromosomes.