Cow genome map
| Conread name: | rpliv0134_k7.y1 |
| Conread position: | 23-256 |
| Cow position: | chr20:9923884-9923646 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 26-275 |
| Cow position: | chr20:20056165-20056425 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 41-275 |
| Cow position: | chr20:17369970-17370189 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 111 |
| Conread position: | 45-236 |
| Cow position: | chr20:4315459-4315263 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 50-268 |
| Cow position: | chr20:36842854-36842642 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 54-175 |
| Cow position: | chr20:36023094-36023217 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 55-260 |
| Cow position: | chr20:31078047-31077856 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 55-261 |
| Cow position: | chr20:2823141-2822944 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 91 |
| Conread position: | 55-268 |
| Cow position: | chr20:23870538-23870753 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 55-275 |
| Cow position: | chr20:15847042-15846815 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 57-230 |
| Cow position: | chr20:16613176-16613012 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 57-259 |
| Cow position: | chr20:3320870-3321068 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 103 |
| Conread position: | 57-275 |
| Cow position: | chr20:21721477-21721270 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 58-275 |
| Cow position: | chr20:19328656-19328450 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 60, 86 |
| Conread position: | 59-151 |
| Cow position: | chr20:40126600-40126693 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 59-218 |
| Cow position: | chr20:24310684-24310843 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 59-221 |
| Cow position: | chr20:30203566-30203417 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 59-227 |
| Cow position: | chr20:15199240-15199074 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 59-258 |
| Cow position: | chr20:10053000-10052811 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 59-261 |
| Cow position: | chr20:38515045-38514853 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 59-261 |
| Cow position: | chr20:40158177-40157974 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 103, 47 |
| Conread position: | 59-264 |
| Cow position: | chr20:36634091-36633884 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 59-275 |
| Cow position: | chr20:12995736-12995945 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 59-275 |
| Cow position: | chr20:36779461-36779669 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 60-154 |
| Cow position: | chr20:23846408-23846504 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 61-154 |
| Cow position: | chr20:6054252-6054345 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-253 |
| Cow position: | chr20:31311787-31311593 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 184 |
| Conread position: | 61-267 |
| Cow position: | chr20:33820736-33820523 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 61-268 |
| Cow position: | chr20:7709494-7709715 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 63-268 |
| Cow position: | chr20:15547472-15547256 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 63-280 |
| Cow position: | chr20:11043208-11043420 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 64-272 |
| Cow position: | chr20:5827215-5827003 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 65-275 |
| Cow position: | chr20:15589315-15589101 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 66-255 |
| Cow position: | chr20:21715039-21714841 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 66-272 |
| Cow position: | chr20:33438707-33438917 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 68-275 |
| Cow position: | chr20:28594540-28594346 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 68-280 |
| Cow position: | chr20:14922871-14922666 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 69-261 |
| Cow position: | chr20:30027621-30027422 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 69-306 |
| Cow position: | chr20:31931369-31931132 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 50, 179 |
| Conread position: | 70-213 |
| Cow position: | chr20:18659075-18659217 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 70-272 |
| Cow position: | chr20:6890989-6890777 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 72-241 |
| Cow position: | chr20:3588904-3588733 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 72-272 |
| Cow position: | chr20:580653-580857 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 72-273 |
| Cow position: | chr20:37228823-37229021 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 72-275 |
| Cow position: | chr20:8021381-8021186 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 84 |
| Conread position: | 73-255 |
| Cow position: | chr20:5078879-5078707 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 73-269 |
| Cow position: | chr20:360934-361120 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 73-269 |
| Cow position: | chr20:5978600-5978781 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 73-271 |
| Cow position: | chr20:27340556-27340376 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 169, 33 |
| Conread position: | 74-261 |
| Cow position: | chr20:20242351-20242159 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 187 |
| Conread position: | 74-272 |
| Cow position: | chr20:24902032-24902230 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 74-280 |
| Cow position: | chr20:38578506-38578709 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 77-275 |
| Cow position: | chr20:20739035-20739227 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 78-264 |
| Cow position: | chr20:26790362-26790540 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 78-268 |
| Cow position: | chr20:3780939-3781139 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 80-256 |
| Cow position: | chr20:4621104-4621275 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 6, 61 |
| Conread position: | 87-265 |
| Cow position: | chr20:18392028-18392201 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 87-275 |
| Cow position: | chr20:10772460-10772266 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 108-253 |
| Cow position: | chr20:23064606-23064753 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 111-300 |
| Cow position: | chr20:15515225-15515410 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 132-262 |
| Cow position: | chr20:36023198-36023327 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 140-272 |
| Cow position: | chr20:17846151-17846022 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.